Wall clock time and date at job start Mon Mar 30 2020 19:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.52998 * 109.47071 * 239.99883 * 2 1 3 5 5 C 1.52999 * 109.47297 * 174.72357 * 4 2 1 6 6 C 1.50700 * 109.47064 * 175.16715 * 5 4 2 7 7 H 1.07993 * 120.00204 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99711 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00291 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00173 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47205 * 89.99803 * 10 8 6 12 12 H 1.48500 * 109.47325 * 210.00255 * 10 8 6 13 13 H 1.48504 * 109.46915 * 330.00319 * 10 8 6 14 14 N 1.46896 * 109.47392 * 120.00037 * 2 1 3 15 15 C 1.44308 * 110.99872 * 295.86202 * 14 2 1 16 16 C 1.53984 * 108.31192 * 221.34542 * 15 14 2 17 17 C 1.45876 * 112.66985 * 278.59559 * 16 15 14 18 18 C 1.54514 * 111.67302 * 61.49167 * 17 16 15 19 19 C 1.50541 * 108.96948 * 282.71321 * 18 17 16 20 20 C 1.53000 * 108.78202 * 330.91748 * 19 18 17 21 21 C 1.52992 * 108.79046 * 212.70732 * 19 18 17 22 22 N 1.46903 * 109.47609 * 59.99654 * 21 19 18 23 23 C 1.47939 * 111.00009 * 63.26043 * 14 2 1 24 24 H 1.08997 * 109.47142 * 303.43468 * 1 2 3 25 25 H 1.08999 * 109.47192 * 63.42971 * 1 2 3 26 26 H 1.09004 * 109.47237 * 183.43320 * 1 2 3 27 27 H 1.08998 * 109.47596 * 294.73002 * 4 2 1 28 28 H 1.09007 * 109.47000 * 54.72517 * 4 2 1 29 29 H 1.08995 * 109.47466 * 295.17151 * 5 4 2 30 30 H 1.09004 * 109.46816 * 55.17214 * 5 4 2 31 31 H 0.97000 * 120.00227 * 180.02562 * 9 8 6 32 32 H 1.08997 * 109.69738 * 101.63595 * 15 14 2 33 33 H 1.09002 * 109.72832 * 341.06719 * 15 14 2 34 34 H 1.08997 * 108.84037 * 157.76814 * 16 15 14 35 35 H 1.09006 * 108.75586 * 39.35765 * 16 15 14 36 36 H 1.09003 * 109.03557 * 300.93054 * 17 16 15 37 37 H 1.08992 * 108.98157 * 182.02210 * 17 16 15 38 38 H 1.09007 * 109.57267 * 42.58958 * 18 17 16 39 39 H 1.08999 * 109.57507 * 162.83241 * 18 17 16 40 40 H 1.09002 * 109.47714 * 46.88782 * 20 19 18 41 41 H 1.09006 * 109.47185 * 166.88645 * 20 19 18 42 42 H 1.08997 * 109.47488 * 286.88315 * 20 19 18 43 43 H 1.09005 * 109.47147 * 179.97438 * 21 19 18 44 44 H 1.09001 * 109.47318 * 299.99729 * 21 19 18 45 45 H 1.00900 * 110.99934 * 56.04799 * 22 21 19 46 46 H 1.00895 * 111.00281 * 179.97438 * 22 21 19 47 47 H 1.08997 * 108.71435 * 313.18892 * 23 14 2 48 48 H 1.09006 * 108.70944 * 71.32510 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5642 -0.6074 -1.3174 6 6 4.0768 -1.4166 -2.4807 7 1 3.3848 -1.9576 -3.1089 8 6 5.4295 -1.4663 -2.7431 9 7 6.2724 -0.8079 -1.9778 10 14 6.0650 -2.4687 -4.1856 11 1 6.1133 -1.6142 -5.3992 12 1 7.4289 -2.9692 -3.8780 13 1 5.1580 -3.6196 -4.4264 14 7 2.0197 -0.6925 1.1994 15 6 1.6381 0.0157 2.3974 16 6 2.8327 0.0019 3.3689 17 6 2.9321 -1.2446 4.1201 18 6 3.1452 -2.4577 3.1871 19 6 1.8316 -2.8192 2.5467 20 6 0.6968 -2.4270 3.4950 21 6 1.7884 -4.3333 2.3314 22 7 1.9157 -5.0159 3.6259 23 6 1.6106 -2.1142 1.1949 24 1 -0.3633 0.5662 0.8576 25 1 -0.3633 0.4597 -0.9191 26 1 -0.3634 -1.0258 0.0615 27 1 1.7558 -1.7725 -1.2033 28 1 1.6015 -0.2649 -2.1367 29 1 3.8450 0.4374 -1.4497 30 1 3.9985 -0.9860 -0.3920 31 1 7.2240 -0.8426 -2.1626 32 1 0.7831 -0.4780 2.8594 33 1 1.3781 1.0448 2.1495 34 1 2.7249 0.8285 4.0711 35 1 3.7504 0.1430 2.7979 36 1 2.0141 -1.3908 4.6894 37 1 3.7719 -1.1759 4.8114 38 1 3.8698 -2.2011 2.4142 39 1 3.5139 -3.3039 3.7667 40 1 0.8658 -1.4159 3.8655 41 1 -0.2525 -2.4640 2.9605 42 1 0.6684 -3.1216 4.3345 43 1 0.8406 -4.6075 1.8681 44 1 2.6108 -4.6314 1.6811 45 1 1.2019 -4.7076 4.2690 46 1 1.8896 -6.0179 3.5105 47 1 0.5528 -2.1729 0.9386 48 1 2.1843 -2.6407 0.4321 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246594337.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:38:03 Heat of formation + Delta-G solvation = 13.727136 kcal Electronic energy + Delta-G solvation = -22813.492956 eV Core-core repulsion = 19903.624808 eV Total energy + Delta-G solvation = -2909.868148 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.33611 -36.87964 -34.78555 -33.05296 -31.48285 -31.02895 -28.96005 -27.90261 -25.86593 -25.17864 -24.86030 -22.95513 -21.16769 -20.13285 -18.93657 -17.95614 -16.59271 -16.18604 -16.05600 -15.13205 -14.75251 -14.36768 -14.29821 -13.89966 -13.54894 -13.31917 -13.17296 -12.84181 -12.39675 -12.25506 -12.19593 -11.94750 -11.77340 -11.53955 -11.41236 -11.13578 -10.86171 -10.80302 -10.63760 -10.41559 -10.23834 -10.07325 -10.04752 -9.84005 -9.57324 -9.47255 -9.13701 -8.83825 -8.64357 -8.19897 -7.48089 -5.85662 -3.86877 3.38241 3.44568 3.47444 4.23618 4.55996 4.68149 4.86061 5.00993 5.08963 5.22306 5.32928 5.47310 5.49668 5.50566 5.55055 5.57340 5.70114 5.71539 5.72309 5.84632 5.89944 5.99598 6.05295 6.09516 6.13294 6.27745 6.30891 6.33995 6.37148 6.43960 6.56185 6.61810 6.72180 6.74736 6.84107 6.94044 6.96330 7.11723 7.33968 7.39502 7.71965 7.85384 7.89791 8.11041 8.26771 8.60181 9.22227 9.75585 11.25210 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.017475 B = 0.005801 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.927012 B = 4825.999048 C = 5333.805382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.086 3.914 3 H 0.076 0.924 4 C -0.105 4.105 5 C 0.029 3.971 6 C -0.518 4.518 7 H 0.049 0.951 8 C 0.058 3.942 9 N -0.893 5.893 10 Si 0.884 3.116 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.276 1.276 14 N -0.522 5.522 15 C 0.045 3.955 16 C -0.117 4.117 17 C -0.125 4.125 18 C -0.100 4.100 19 C -0.051 4.051 20 C -0.175 4.175 21 C 0.070 3.930 22 N -0.846 5.846 23 C 0.069 3.931 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.008 0.992 30 H 0.034 0.966 31 H 0.258 0.742 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.042 0.958 42 H 0.052 0.948 43 H 0.021 0.979 44 H 0.078 0.922 45 H 0.336 0.664 46 H 0.337 0.663 47 H 0.029 0.971 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.327 -2.745 12.807 17.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.022 4.022 3 H 0.095 0.905 4 C -0.143 4.143 5 C -0.008 4.008 6 C -0.557 4.557 7 H 0.067 0.933 8 C -0.143 4.143 9 N -0.532 5.532 10 Si 0.713 3.287 11 H -0.209 1.209 12 H -0.213 1.213 13 H -0.201 1.201 14 N -0.245 5.245 15 C -0.083 4.083 16 C -0.155 4.155 17 C -0.162 4.162 18 C -0.138 4.138 19 C -0.052 4.052 20 C -0.232 4.232 21 C -0.061 4.061 22 N -0.378 5.378 23 C -0.058 4.058 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.026 0.974 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.040 0.960 44 H 0.096 0.904 45 H 0.150 0.850 46 H 0.150 0.850 47 H 0.047 0.953 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.936 -2.358 12.862 17.046 hybrid contribution -1.418 -0.914 -1.143 2.038 sum -12.354 -3.272 11.718 17.339 Atomic orbital electron populations 1.22533 0.99271 1.01341 1.01248 1.21893 0.90711 0.98380 0.91185 0.90545 1.21752 1.00836 0.98375 0.93292 1.19007 0.88047 0.96459 0.97268 1.21326 0.91816 1.29533 1.12979 0.93256 1.24979 0.97176 0.95818 0.96316 1.69976 1.02363 1.42511 1.38398 0.86723 0.78196 0.80587 0.83214 1.20871 1.21328 1.20085 1.60734 1.61518 1.00981 1.01293 1.22197 0.96781 0.97740 0.91627 1.20522 1.00433 0.96933 0.97605 1.20765 1.01277 0.95690 0.98435 1.21322 0.96259 0.97309 0.98883 1.20267 0.96553 0.93498 0.94903 1.22869 0.97465 1.03350 0.99476 1.21816 0.99790 0.93841 0.90659 1.58773 1.56519 1.10045 1.12414 1.22485 0.97995 0.88973 0.96373 0.93610 0.92480 0.92793 0.93346 0.93655 0.97392 0.94714 0.93258 0.92598 0.92423 0.93390 0.90749 0.91662 0.93105 0.90746 0.90690 0.88819 0.93929 0.92896 0.96030 0.90397 0.84951 0.85045 0.95312 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.62 8.73 37.16 0.32 -2.30 16 2 C 0.09 1.48 2.15 -67.72 -0.15 1.34 16 3 H 0.08 1.38 7.97 -51.93 -0.41 0.96 16 4 C -0.10 -2.18 4.33 -26.73 -0.12 -2.29 16 5 C 0.03 0.77 4.92 -27.88 -0.14 0.63 16 6 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 7 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -27.46 13.29 55.43 0.74 -26.72 16 10 Si 0.88 22.15 29.54 -169.99 -5.02 17.13 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 N -0.52 -8.57 3.38 -226.57 -0.77 -9.33 16 15 C 0.04 0.62 4.37 -4.70 -0.02 0.60 16 16 C -0.12 -1.60 5.33 -29.59 -0.16 -1.76 16 17 C -0.12 -1.60 5.22 -29.31 -0.15 -1.75 16 18 C -0.10 -1.44 4.90 -27.17 -0.13 -1.58 16 19 C -0.05 -0.67 0.57 -155.19 -0.09 -0.76 16 20 C -0.18 -1.93 6.32 37.16 0.23 -1.70 16 21 C 0.07 0.86 5.53 -3.83 -0.02 0.84 16 22 N -0.85 -8.76 8.47 -10.37 -0.09 -8.85 16 23 C 0.07 1.07 3.48 -2.70 -0.01 1.06 16 24 H 0.04 0.58 7.22 -51.93 -0.37 0.21 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.76 6.07 -51.93 -0.32 0.44 16 27 H 0.05 1.00 6.31 -51.93 -0.33 0.67 16 28 H 0.04 0.93 8.14 -51.92 -0.42 0.51 16 29 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.03 0.97 7.63 -51.93 -0.40 0.58 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.06 0.71 4.09 -51.93 -0.21 0.50 16 33 H 0.06 0.79 7.17 -51.93 -0.37 0.42 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 1.23 8.08 -51.93 -0.42 0.82 16 36 H 0.07 0.74 4.99 -51.93 -0.26 0.49 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 1.33 7.79 -51.92 -0.40 0.93 16 39 H 0.07 1.08 6.87 -51.93 -0.36 0.73 16 40 H 0.09 1.04 2.80 -51.93 -0.15 0.90 16 41 H 0.04 0.46 7.73 -51.93 -0.40 0.06 16 42 H 0.05 0.52 5.79 -51.93 -0.30 0.22 16 43 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.34 3.06 6.64 -39.29 -0.26 2.80 16 46 H 0.34 2.95 9.08 -39.29 -0.36 2.59 16 47 H 0.03 0.43 5.32 -51.93 -0.28 0.15 16 48 H 0.08 1.50 6.63 -51.93 -0.34 1.15 16 LS Contribution 337.64 15.07 5.09 5.09 Total: -1.00 -30.07 337.64 -9.32 -39.39 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -8.44 Total: 4.61 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -0.83 Total: -21.32 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -0.12 Total: -44.90 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.07 -9.32 -39.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246594337.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.121 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds