Wall clock time and date at job start Mon Mar 30 2020 19:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47100 * 2 1 4 4 H 1.09006 * 109.46939 * 54.87910 * 3 2 1 5 5 C 1.50699 * 109.47404 * 174.88120 * 3 2 1 6 6 H 1.08000 * 119.99862 * 119.72727 * 5 3 2 7 7 C 1.37879 * 119.99840 * 299.99801 * 5 3 2 8 8 N 1.31516 * 119.99760 * 359.73220 * 7 5 3 9 9 Si 1.86796 * 119.99872 * 179.72277 * 7 5 3 10 10 H 1.48498 * 109.47249 * 90.00588 * 9 7 5 11 11 H 1.48504 * 109.47194 * 210.00384 * 9 7 5 12 12 H 1.48493 * 109.47193 * 330.00204 * 9 7 5 13 13 N 1.46900 * 109.47105 * 294.88167 * 3 2 1 14 14 C 1.46901 * 110.99973 * 154.15327 * 13 3 2 15 15 C 1.53003 * 109.47090 * 185.50329 * 14 13 3 16 16 C 1.53003 * 109.47159 * 179.97438 * 15 14 13 17 17 N 1.46899 * 109.47004 * 179.97438 * 16 15 14 18 18 C 1.46847 * 110.99850 * 45.79669 * 17 16 15 19 19 C 1.53035 * 109.51943 * 185.83721 * 18 17 16 20 20 C 1.53123 * 109.27888 * 300.81539 * 19 18 17 21 21 C 1.53001 * 109.57433 * 177.59295 * 20 19 18 22 22 C 1.53117 * 109.15912 * 57.65862 * 20 19 18 23 23 C 1.46847 * 110.99701 * 170.00441 * 17 16 15 24 24 H 1.08996 * 109.47205 * 297.27756 * 1 2 3 25 25 H 1.08994 * 109.47258 * 57.28868 * 1 2 3 26 26 H 1.09006 * 109.46836 * 177.28191 * 1 2 3 27 27 H 1.08996 * 109.47507 * 240.00258 * 2 1 3 28 28 H 1.09001 * 109.47393 * 119.99842 * 2 1 3 29 29 H 0.97000 * 119.99603 * 180.02562 * 8 7 5 30 30 H 1.00894 * 110.99928 * 278.10683 * 13 3 2 31 31 H 1.09005 * 109.47439 * 305.50105 * 14 13 3 32 32 H 1.08997 * 109.47238 * 65.49972 * 14 13 3 33 33 H 1.08997 * 109.46847 * 299.99815 * 15 14 13 34 34 H 1.09004 * 109.47148 * 60.00365 * 15 14 13 35 35 H 1.08993 * 109.47304 * 300.00562 * 16 15 14 36 36 H 1.09004 * 109.46565 * 60.00286 * 16 15 14 37 37 H 1.08995 * 109.45944 * 305.84866 * 18 17 16 38 38 H 1.08999 * 109.46314 * 65.82045 * 18 17 16 39 39 H 1.09002 * 109.50025 * 180.87680 * 19 18 17 40 40 H 1.08995 * 109.50580 * 60.76378 * 19 18 17 41 41 H 1.08997 * 109.52430 * 297.75647 * 20 19 18 42 42 H 1.09003 * 109.47279 * 300.29106 * 21 20 19 43 43 H 1.09002 * 109.47126 * 60.28983 * 21 20 19 44 44 H 1.08999 * 109.46826 * 180.29096 * 21 20 19 45 45 H 1.08993 * 109.50654 * 182.40240 * 22 20 19 46 46 H 1.09007 * 109.53950 * 62.30108 * 22 20 19 47 47 H 1.09007 * 109.46360 * 294.17825 * 23 17 16 48 48 H 1.08998 * 109.46445 * 54.15524 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6037 1.9821 0.8406 5 6 3.5417 1.4445 0.1268 6 1 4.1486 1.8846 -0.6506 7 6 4.1409 0.8794 1.2325 8 7 3.4017 0.3434 2.1791 9 14 6.0025 0.8749 1.3860 10 1 6.4445 2.1081 2.0854 11 1 6.4324 -0.3157 2.1625 12 1 6.6107 0.8287 0.0321 13 7 1.6538 2.0984 -1.2564 14 6 1.5551 3.5537 -1.0819 15 6 1.0201 4.1865 -2.3681 16 6 0.9167 5.7021 -2.1861 17 7 0.4037 6.3097 -3.4213 18 6 -0.7491 5.5603 -3.9369 19 6 -1.1647 6.1317 -5.2944 20 6 -1.5255 7.6108 -5.1313 21 6 -1.8844 8.2043 -6.4951 22 6 -0.3242 8.3596 -4.5476 23 6 0.0672 7.7237 -3.2118 24 1 -0.3633 0.4710 0.9133 25 1 -0.3633 0.5553 -0.8646 26 1 -0.3633 -1.0266 -0.0487 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8232 -0.0538 2.9571 30 1 2.2970 1.8660 -1.9982 31 1 0.8765 3.7757 -0.2583 32 1 2.5415 3.9607 -0.8597 33 1 1.6987 3.9645 -3.1917 34 1 0.0336 3.7795 -2.5903 35 1 0.2381 5.9237 -1.3626 36 1 1.9031 6.1094 -1.9638 37 1 -0.4779 4.5109 -4.0522 38 1 -1.5803 5.6457 -3.2370 39 1 -2.0301 5.5853 -5.6696 40 1 -0.3386 6.0340 -5.9987 41 1 -2.3766 7.7060 -4.4571 42 1 -1.0335 8.1066 -7.1692 43 1 -2.7396 7.6707 -6.9098 44 1 -2.1359 9.2584 -6.3777 45 1 -0.5889 9.4050 -4.3892 46 1 0.5155 8.2977 -5.2399 47 1 -0.7679 7.7989 -2.5152 48 1 0.9312 8.2455 -2.8005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152637.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:38:25 Heat of formation + Delta-G solvation = -28.434666 kcal Electronic energy + Delta-G solvation = -20987.240788 eV Core-core repulsion = 18075.544367 eV Total energy + Delta-G solvation = -2911.696421 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.35806 -36.53914 -35.20119 -32.97753 -31.53140 -30.96423 -29.92870 -27.79164 -26.06153 -23.84590 -23.42068 -22.50575 -21.59796 -20.37790 -19.76060 -19.29198 -16.69836 -16.04409 -15.32163 -14.97228 -14.75718 -14.59326 -14.20410 -14.08691 -13.89784 -13.48019 -12.92091 -12.73642 -12.54862 -12.48383 -12.25803 -11.94570 -11.85006 -11.38368 -11.30142 -11.24829 -11.05257 -10.90092 -10.82026 -10.70572 -10.68483 -10.43682 -10.37590 -10.19889 -9.95859 -9.57026 -9.41496 -9.03427 -8.36471 -8.27404 -7.21741 -5.98390 -4.11277 3.27366 3.34623 3.37743 3.88880 4.40472 4.58539 4.63499 4.66069 4.99695 5.17745 5.24783 5.25980 5.30507 5.33328 5.40459 5.48460 5.49423 5.56896 5.72402 5.74585 5.75516 5.78730 5.91918 5.92163 5.98186 6.02032 6.06348 6.26544 6.28497 6.31844 6.40960 6.53659 6.65137 6.73209 6.75815 7.12403 7.14248 7.16420 7.19741 7.46824 7.61757 7.79500 8.11338 8.17895 8.36203 8.69813 9.02225 9.56269 11.01730 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.028616 B = 0.003254 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.234513 B = 8601.960391 C = 9248.133816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.030 0.970 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.690 5.690 14 C 0.069 3.931 15 C -0.117 4.117 16 C 0.057 3.943 17 N -0.538 5.538 18 C 0.047 3.953 19 C -0.111 4.111 20 C -0.095 4.095 21 C -0.145 4.145 22 C -0.110 4.110 23 C 0.055 3.945 24 H 0.035 0.965 25 H 0.049 0.951 26 H 0.024 0.976 27 H 0.030 0.970 28 H 0.089 0.911 29 H 0.261 0.739 30 H 0.327 0.673 31 H 0.056 0.944 32 H 0.026 0.974 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.031 0.969 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.030 0.970 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.030 0.970 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.330 13.388 -12.590 20.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.048 0.952 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.319 5.319 14 C -0.062 4.062 15 C -0.155 4.155 16 C -0.071 4.071 17 N -0.262 5.262 18 C -0.080 4.080 19 C -0.149 4.149 20 C -0.114 4.114 21 C -0.203 4.203 22 C -0.148 4.148 23 C -0.074 4.074 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.143 0.857 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.050 0.950 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.048 0.952 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.048 0.952 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.630 13.161 -12.649 20.639 hybrid contribution 1.417 0.285 0.972 1.741 sum -8.214 13.446 -11.677 19.612 Atomic orbital electron populations 1.21705 0.99066 0.98386 1.00335 1.21491 0.92073 0.99306 1.01588 1.19130 0.92792 0.91222 0.86177 0.95164 1.21882 0.92812 1.38246 1.05408 0.92873 1.24942 0.97936 0.94993 0.95732 1.69884 1.34800 1.38462 1.09275 0.86653 0.86068 0.77514 0.78104 1.20779 1.21156 1.19970 1.60862 1.54857 1.06122 1.10073 1.21687 0.98735 0.90202 0.95559 1.21728 1.01964 0.92684 0.99135 1.22118 0.99827 0.95511 0.89617 1.61998 1.32517 1.01791 1.29945 1.22229 0.91377 0.99000 0.95426 1.21660 1.01019 0.94857 0.97386 1.21195 0.97761 0.95513 0.96927 1.21809 1.01321 1.00373 0.96763 1.21637 0.98106 0.98241 0.96831 1.22072 0.99454 0.89249 0.96579 0.94604 0.93232 0.95676 0.95132 0.89255 0.92905 0.85727 0.92506 0.95533 0.91695 0.91453 0.95032 0.90784 0.89486 0.95219 0.91769 0.91134 0.91747 0.92606 0.92823 0.92932 0.91887 0.91113 0.95198 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.83 37.16 0.37 -2.51 16 2 C -0.11 -2.57 5.45 -26.73 -0.15 -2.72 16 3 C 0.21 5.36 1.97 -68.86 -0.14 5.22 16 4 H 0.03 0.84 7.70 -51.93 -0.40 0.44 16 5 C -0.54 -14.78 8.47 -34.44 -0.29 -15.07 16 6 H 0.05 1.44 7.73 -52.49 -0.41 1.03 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.89 -25.22 11.31 55.43 0.63 -24.59 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 13 N -0.69 -14.53 5.63 -107.95 -0.61 -15.14 16 14 C 0.07 1.28 5.51 -3.82 -0.02 1.26 16 15 C -0.12 -1.75 4.77 -26.73 -0.13 -1.88 16 16 C 0.06 0.77 5.27 -3.82 -0.02 0.75 16 17 N -0.54 -6.59 4.81 -234.67 -1.13 -7.72 16 18 C 0.05 0.54 4.85 -3.83 -0.02 0.52 16 19 C -0.11 -1.07 5.38 -26.65 -0.14 -1.21 16 20 C -0.10 -0.83 2.79 -90.50 -0.25 -1.08 16 21 C -0.15 -1.06 9.20 37.16 0.34 -0.72 16 22 C -0.11 -0.99 5.38 -26.65 -0.14 -1.14 16 23 C 0.05 0.58 5.42 -3.83 -0.02 0.56 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.05 1.00 7.68 -51.93 -0.40 0.60 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.09 2.41 5.96 -51.93 -0.31 2.10 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.33 6.84 8.46 -39.29 -0.33 6.51 16 31 H 0.06 1.09 7.92 -51.93 -0.41 0.68 16 32 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.00 6.21 -51.93 -0.32 0.68 16 35 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.09 1.05 5.81 -51.93 -0.30 0.75 16 38 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 LS Contribution 364.41 15.07 5.49 5.49 Total: -1.00 -27.47 364.41 -10.97 -38.44 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -9.62 Total: 3.57 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -0.71 Total: -16.29 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -1.11 Total: -47.45 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.47 -10.97 -38.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152637.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.005 kcal (2) G-P(sol) polarization free energy of solvation -27.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds