Wall clock time and date at job start Mon Mar 30 2020 19:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47100 * 2 1 4 4 H 1.09006 * 109.46939 * 54.87910 * 3 2 1 5 5 C 1.50699 * 109.47404 * 174.88120 * 3 2 1 6 6 H 1.08000 * 119.99862 * 119.72727 * 5 3 2 7 7 C 1.37879 * 119.99840 * 299.99801 * 5 3 2 8 8 N 1.31516 * 119.99760 * 359.73220 * 7 5 3 9 9 Si 1.86796 * 119.99872 * 179.72277 * 7 5 3 10 10 H 1.48498 * 109.47249 * 90.00588 * 9 7 5 11 11 H 1.48504 * 109.47194 * 210.00384 * 9 7 5 12 12 H 1.48493 * 109.47193 * 330.00204 * 9 7 5 13 13 N 1.46900 * 109.47105 * 294.88167 * 3 2 1 14 14 C 1.46901 * 110.99973 * 154.15327 * 13 3 2 15 15 C 1.53003 * 109.47090 * 185.50329 * 14 13 3 16 16 C 1.53003 * 109.47159 * 179.97438 * 15 14 13 17 17 N 1.46899 * 109.47004 * 179.97438 * 16 15 14 18 18 C 1.46847 * 110.99850 * 45.79669 * 17 16 15 19 19 C 1.53035 * 109.51943 * 185.83721 * 18 17 16 20 20 C 1.53123 * 109.27888 * 300.81539 * 19 18 17 21 21 C 1.53001 * 109.57433 * 177.59295 * 20 19 18 22 22 C 1.53117 * 109.15912 * 57.65862 * 20 19 18 23 23 C 1.46847 * 110.99701 * 170.00441 * 17 16 15 24 24 H 1.08996 * 109.47205 * 297.27756 * 1 2 3 25 25 H 1.08994 * 109.47258 * 57.28868 * 1 2 3 26 26 H 1.09006 * 109.46836 * 177.28191 * 1 2 3 27 27 H 1.08996 * 109.47507 * 240.00258 * 2 1 3 28 28 H 1.09001 * 109.47393 * 119.99842 * 2 1 3 29 29 H 0.97000 * 119.99603 * 180.02562 * 8 7 5 30 30 H 1.00894 * 110.99928 * 278.10683 * 13 3 2 31 31 H 1.09005 * 109.47439 * 305.50105 * 14 13 3 32 32 H 1.08997 * 109.47238 * 65.49972 * 14 13 3 33 33 H 1.08997 * 109.46847 * 299.99815 * 15 14 13 34 34 H 1.09004 * 109.47148 * 60.00365 * 15 14 13 35 35 H 1.08993 * 109.47304 * 300.00562 * 16 15 14 36 36 H 1.09004 * 109.46565 * 60.00286 * 16 15 14 37 37 H 1.08995 * 109.45944 * 305.84866 * 18 17 16 38 38 H 1.08999 * 109.46314 * 65.82045 * 18 17 16 39 39 H 1.09002 * 109.50025 * 180.87680 * 19 18 17 40 40 H 1.08995 * 109.50580 * 60.76378 * 19 18 17 41 41 H 1.08997 * 109.52430 * 297.75647 * 20 19 18 42 42 H 1.09003 * 109.47279 * 300.29106 * 21 20 19 43 43 H 1.09002 * 109.47126 * 60.28983 * 21 20 19 44 44 H 1.08999 * 109.46826 * 180.29096 * 21 20 19 45 45 H 1.08993 * 109.50654 * 182.40240 * 22 20 19 46 46 H 1.09007 * 109.53950 * 62.30108 * 22 20 19 47 47 H 1.09007 * 109.46360 * 294.17825 * 23 17 16 48 48 H 1.08998 * 109.46445 * 54.15524 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6037 1.9821 0.8406 5 6 3.5417 1.4445 0.1268 6 1 4.1486 1.8846 -0.6506 7 6 4.1409 0.8794 1.2325 8 7 3.4017 0.3434 2.1791 9 14 6.0025 0.8749 1.3860 10 1 6.4445 2.1081 2.0854 11 1 6.4324 -0.3157 2.1625 12 1 6.6107 0.8287 0.0321 13 7 1.6538 2.0984 -1.2564 14 6 1.5551 3.5537 -1.0819 15 6 1.0201 4.1865 -2.3681 16 6 0.9167 5.7021 -2.1861 17 7 0.4037 6.3097 -3.4213 18 6 -0.7491 5.5603 -3.9369 19 6 -1.1647 6.1317 -5.2944 20 6 -1.5255 7.6108 -5.1313 21 6 -1.8844 8.2043 -6.4951 22 6 -0.3242 8.3596 -4.5476 23 6 0.0672 7.7237 -3.2118 24 1 -0.3633 0.4710 0.9133 25 1 -0.3633 0.5553 -0.8646 26 1 -0.3633 -1.0266 -0.0487 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8232 -0.0538 2.9571 30 1 2.2970 1.8660 -1.9982 31 1 0.8765 3.7757 -0.2583 32 1 2.5415 3.9607 -0.8597 33 1 1.6987 3.9645 -3.1917 34 1 0.0336 3.7795 -2.5903 35 1 0.2381 5.9237 -1.3626 36 1 1.9031 6.1094 -1.9638 37 1 -0.4779 4.5109 -4.0522 38 1 -1.5803 5.6457 -3.2370 39 1 -2.0301 5.5853 -5.6696 40 1 -0.3386 6.0340 -5.9987 41 1 -2.3766 7.7060 -4.4571 42 1 -1.0335 8.1066 -7.1692 43 1 -2.7396 7.6707 -6.9098 44 1 -2.1359 9.2584 -6.3777 45 1 -0.5889 9.4050 -4.3892 46 1 0.5155 8.2977 -5.2399 47 1 -0.7679 7.7989 -2.5152 48 1 0.9312 8.2455 -2.8005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152637.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:38:25 Heat of formation + Delta-G solvation = -44.058241 kcal Electronic energy + Delta-G solvation = -20987.918277 eV Core-core repulsion = 18075.544367 eV Total energy + Delta-G solvation = -2912.373910 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.24418 -38.22501 -36.35245 -34.59676 -33.33308 -31.89278 -31.23683 -28.97744 -27.73973 -25.23999 -24.45536 -23.96226 -22.72480 -21.73583 -21.08456 -20.52433 -18.74444 -17.06686 -16.80544 -16.51398 -15.90648 -15.56214 -15.40621 -15.36349 -14.93674 -14.83964 -14.68834 -14.08619 -13.79384 -13.50807 -13.26606 -13.21872 -13.14119 -12.96274 -12.73896 -12.67169 -12.55182 -12.28318 -12.10622 -12.09821 -12.04579 -11.69114 -11.51605 -11.50138 -11.31641 -11.12240 -10.99115 -10.95340 -10.47220 -9.24791 -9.05602 -8.06536 -6.29056 1.37386 1.39119 1.48589 2.39382 2.91629 3.13226 3.65283 3.88320 3.91199 3.92014 4.11340 4.24978 4.38243 4.39718 4.50851 4.53847 4.55469 4.61117 4.66437 4.76687 4.80005 4.83309 4.84676 4.87319 4.91875 4.94985 4.97727 5.06098 5.15719 5.17206 5.27784 5.28058 5.29881 5.34752 5.38460 5.41679 5.51561 5.57239 5.63195 5.77022 6.09690 6.13803 6.19789 6.22411 6.38510 6.81607 7.01293 7.42554 8.90148 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.028616 B = 0.003254 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.234513 B = 8601.960391 C = 9248.133816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.221 3.779 4 H -0.003 1.003 5 C -0.561 4.561 6 H 0.050 0.950 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.951 3.049 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.270 1.270 13 N -0.681 5.681 14 C 0.073 3.927 15 C -0.099 4.099 16 C 0.063 3.937 17 N -0.544 5.544 18 C 0.046 3.954 19 C -0.108 4.108 20 C -0.094 4.094 21 C -0.142 4.142 22 C -0.106 4.106 23 C 0.052 3.948 24 H 0.028 0.972 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.029 0.971 28 H 0.060 0.940 29 H 0.262 0.738 30 H 0.330 0.670 31 H 0.047 0.953 32 H 0.010 0.990 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.029 0.971 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.026 0.974 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.078 0.922 46 H 0.065 0.935 47 H 0.029 0.971 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.638 14.245 -13.972 22.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 C 0.112 3.888 4 H 0.015 0.985 5 C -0.600 4.600 6 H 0.068 0.932 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.777 3.223 10 H -0.204 1.204 11 H -0.207 1.207 12 H -0.194 1.194 13 N -0.310 5.310 14 C -0.058 4.058 15 C -0.137 4.137 16 C -0.065 4.065 17 N -0.269 5.269 18 C -0.082 4.082 19 C -0.146 4.146 20 C -0.113 4.113 21 C -0.199 4.199 22 C -0.144 4.144 23 C -0.076 4.076 24 H 0.048 0.952 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.146 0.854 31 H 0.066 0.934 32 H 0.028 0.972 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.044 0.956 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.047 0.953 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.947 14.031 -14.049 22.207 hybrid contribution 1.490 0.038 1.408 2.051 sum -8.456 14.069 -12.641 20.718 Atomic orbital electron populations 1.21566 0.96413 0.99919 1.00391 1.21358 0.94437 0.98330 1.00018 1.18922 0.91636 0.91619 0.86616 0.98531 1.22182 0.94087 1.38210 1.05484 0.93219 1.25689 1.02242 0.94715 0.95491 1.70012 1.36455 1.38958 1.09658 0.85663 0.80887 0.77551 0.78177 1.20415 1.20709 1.19418 1.60807 1.54336 1.07429 1.08398 1.21695 0.97846 0.88858 0.97364 1.21522 1.01769 0.93608 0.96764 1.21982 0.99845 0.94311 0.90362 1.62023 1.33161 1.02725 1.28996 1.22257 0.90901 0.98636 0.96379 1.21641 1.01219 0.95686 0.96014 1.21193 0.97510 0.94828 0.97777 1.21770 1.01497 1.00858 0.95758 1.21622 0.98072 0.99020 0.95670 1.22158 0.99533 0.88256 0.97664 0.95244 0.92289 0.93488 0.95221 0.92165 0.92854 0.85405 0.93416 0.97153 0.91691 0.91014 0.95243 0.91060 0.90315 0.95589 0.90689 0.91635 0.91830 0.92656 0.92295 0.92096 0.90322 0.91580 0.95318 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 9.83 71.98 0.71 -4.44 16 2 C -0.10 -5.02 5.45 30.59 0.17 -4.85 16 3 C 0.22 11.21 1.97 44.17 0.09 11.30 16 4 H 0.00 -0.19 7.70 -2.38 -0.02 -0.21 16 5 C -0.56 -30.81 8.47 25.60 0.22 -30.59 16 6 H 0.05 2.70 7.73 -2.91 -0.02 2.68 16 7 C 0.02 1.03 5.29 84.65 0.45 1.48 16 8 N -0.91 -52.70 11.31 21.45 0.24 -52.46 16 9 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 13 N -0.68 -28.72 5.63 -495.43 -2.79 -31.51 16 14 C 0.07 2.74 5.51 86.30 0.48 3.21 16 15 C -0.10 -2.89 4.77 30.60 0.15 -2.75 16 16 C 0.06 1.66 5.27 86.30 0.46 2.12 16 17 N -0.54 -12.75 4.81 -896.37 -4.31 -17.06 16 18 C 0.05 0.99 4.85 86.33 0.42 1.41 16 19 C -0.11 -1.89 5.38 30.65 0.16 -1.73 16 20 C -0.09 -1.45 2.79 -10.71 -0.03 -1.48 16 21 C -0.14 -1.74 9.20 71.98 0.66 -1.08 16 22 C -0.11 -1.71 5.38 30.65 0.16 -1.54 16 23 C 0.05 1.02 5.42 86.33 0.47 1.49 16 24 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.06 2.29 7.68 -2.39 -0.02 2.27 16 26 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.06 3.31 5.96 -2.39 -0.01 3.29 16 29 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 30 H 0.33 13.71 8.46 -89.70 -0.76 12.95 16 31 H 0.05 1.87 7.92 -2.38 -0.02 1.85 16 32 H 0.01 0.42 8.12 -2.39 -0.02 0.40 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.07 2.07 6.21 -2.38 -0.01 2.05 16 35 H 0.03 0.78 8.08 -2.39 -0.02 0.76 16 36 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.08 1.81 5.81 -2.39 -0.01 1.80 16 38 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 47 H 0.03 0.58 8.14 -2.38 -0.02 0.56 16 48 H 0.07 1.43 8.12 -2.39 -0.02 1.42 16 Total: -1.00 -58.29 364.41 -0.16 -58.44 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.12 Total: 24.27 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 4.55 Total: -27.45 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -6.86 Total: -101.03 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -58.29 -0.16 -58.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152637.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.382 kcal (2) G-P(sol) polarization free energy of solvation -58.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds