Wall clock time and date at job start Mon Mar 30 2020 19:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46827 * 2 1 4 4 H 1.09004 * 109.46732 * 56.35234 * 3 2 1 5 5 C 1.50698 * 109.47251 * 176.34994 * 3 2 1 6 6 H 1.08003 * 120.00010 * 119.99864 * 5 3 2 7 7 C 1.37876 * 120.00096 * 300.00525 * 5 3 2 8 8 N 1.31517 * 120.00144 * 179.97438 * 7 5 3 9 9 Si 1.86804 * 120.00002 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47058 * 90.00019 * 9 7 5 11 11 H 1.48501 * 109.46938 * 209.99690 * 9 7 5 12 12 H 1.48500 * 109.46999 * 329.99624 * 9 7 5 13 13 N 1.46898 * 109.47306 * 296.35486 * 3 2 1 14 14 C 1.46907 * 110.99719 * 153.63934 * 13 3 2 15 15 H 1.09000 * 109.47096 * 36.88109 * 14 13 3 16 16 C 1.53000 * 109.47124 * 276.87680 * 14 13 3 17 17 C 1.52996 * 109.46731 * 156.87895 * 14 13 3 18 18 N 1.46906 * 109.47337 * 304.99707 * 17 14 13 19 19 C 1.46839 * 110.99856 * 294.21429 * 18 17 14 20 20 C 1.53041 * 109.52094 * 174.16109 * 19 18 17 21 21 C 1.53111 * 109.28033 * 59.17662 * 20 19 18 22 22 C 1.52999 * 109.57570 * 182.41100 * 21 20 19 23 23 C 1.53122 * 109.16101 * 302.34662 * 21 20 19 24 24 C 1.46851 * 111.00011 * 169.99889 * 18 17 14 25 25 H 1.09001 * 109.47196 * 295.37990 * 1 2 3 26 26 H 1.08992 * 109.47630 * 55.38495 * 1 2 3 27 27 H 1.09007 * 109.46930 * 175.38486 * 1 2 3 28 28 H 1.08999 * 109.47243 * 120.00009 * 2 1 3 29 29 H 1.08996 * 109.46935 * 240.00540 * 2 1 3 30 30 H 0.96994 * 120.00126 * 179.97438 * 8 7 5 31 31 H 1.00899 * 110.99714 * 277.59123 * 13 3 2 32 32 H 1.09000 * 109.46856 * 305.01721 * 16 14 13 33 33 H 1.09003 * 109.46797 * 65.01237 * 16 14 13 34 34 H 1.08991 * 109.46945 * 185.01642 * 16 14 13 35 35 H 1.09007 * 109.47333 * 65.00097 * 17 14 13 36 36 H 1.09003 * 109.47309 * 184.99594 * 17 14 13 37 37 H 1.08997 * 109.46333 * 294.17080 * 19 18 17 38 38 H 1.08996 * 109.46730 * 54.13974 * 19 18 17 39 39 H 1.09004 * 109.50074 * 299.23346 * 20 19 18 40 40 H 1.09002 * 109.53527 * 179.13658 * 20 19 18 41 41 H 1.09005 * 109.52358 * 62.25066 * 21 20 19 42 42 H 1.09002 * 109.47388 * 179.71629 * 22 21 20 43 43 H 1.09004 * 109.46842 * 299.71502 * 22 21 20 44 44 H 1.08998 * 109.47518 * 59.71268 * 22 21 20 45 45 H 1.08994 * 109.50203 * 297.70928 * 23 21 20 46 46 H 1.09007 * 109.53265 * 177.61497 * 23 21 20 47 47 H 1.08998 * 109.46260 * 305.86009 * 24 18 17 48 48 H 1.09000 * 109.45613 * 65.83557 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6241 1.9749 0.8555 5 6 3.5442 1.4436 0.0905 6 1 4.1321 1.8944 -0.6955 7 6 4.1700 0.8691 1.1764 8 7 5.4828 0.8696 1.2551 9 14 3.1531 0.0899 2.5360 10 1 2.9244 -1.3437 2.2235 11 1 3.8798 0.2056 3.8259 12 1 1.8468 0.7886 2.6394 13 7 1.6235 2.1092 -1.2410 14 6 1.5174 3.5617 -1.0483 15 1 2.3091 3.8982 -0.3789 16 6 0.1556 3.8969 -0.4367 17 6 1.6574 4.2668 -2.3988 18 7 2.9118 3.8512 -3.0406 19 6 4.0745 4.3178 -2.2747 20 6 5.3543 3.7460 -2.8888 21 6 5.4633 4.2022 -4.3463 22 6 6.7094 3.5855 -4.9847 23 6 4.2175 3.7453 -5.1104 24 6 2.9706 4.3171 -4.4320 25 1 -0.3633 0.4405 0.9285 26 1 -0.3634 0.5837 -0.8457 27 1 -0.3633 -1.0244 -0.0827 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 5.9230 0.4657 2.0193 31 1 2.2534 1.8899 -1.9981 32 1 -0.6353 3.4822 -1.0617 33 1 0.0910 3.4680 0.5633 34 1 0.0410 4.9790 -0.3761 35 1 0.8160 3.9985 -3.0378 36 1 1.6677 5.3460 -2.2459 37 1 4.1139 5.4067 -2.3015 38 1 3.9866 3.9831 -1.2411 39 1 5.3218 2.6572 -2.8497 40 1 6.2186 4.1046 -2.3297 41 1 5.5350 5.2893 -4.3834 42 1 6.7826 3.9073 -6.0236 43 1 7.5957 3.9113 -4.4402 44 1 6.6379 2.4986 -4.9452 45 1 4.1671 2.6566 -5.1064 46 1 4.2689 4.1035 -6.1387 47 1 2.0810 3.9819 -4.9652 48 1 3.0153 5.4061 -4.4486 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155462.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:39:01 Heat of formation + Delta-G solvation = -15.924518 kcal Electronic energy + Delta-G solvation = -22606.206524 eV Core-core repulsion = 19695.052584 eV Total energy + Delta-G solvation = -2911.153940 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.10427 -36.83665 -34.64503 -32.68269 -31.74901 -30.51098 -29.22429 -27.99591 -26.28370 -24.61941 -22.96287 -22.39770 -21.56793 -19.84771 -19.52573 -19.14014 -16.86636 -15.72045 -15.20813 -14.92510 -14.51657 -14.26816 -14.14058 -13.78762 -13.37434 -13.26181 -12.96026 -12.60197 -12.32988 -12.08014 -12.01675 -11.76618 -11.72229 -11.58538 -11.32962 -11.27946 -11.15353 -10.88064 -10.69779 -10.52971 -10.50445 -10.25515 -10.06376 -9.99617 -9.74384 -9.61953 -9.34818 -8.99162 -8.48447 -7.93594 -7.11703 -6.03277 -4.01775 3.31657 3.41943 3.44495 4.21093 4.45302 4.95033 5.02320 5.05947 5.17926 5.30374 5.42118 5.51784 5.60388 5.69719 5.75217 5.79874 5.85336 5.86375 5.93251 5.98207 6.04814 6.09499 6.12003 6.14236 6.17845 6.22754 6.28455 6.32323 6.36338 6.46719 6.49268 6.59595 6.68994 6.78835 6.81733 6.83730 6.86430 7.12011 7.23854 7.42650 7.48647 7.50658 7.71684 8.26605 8.58370 8.78990 9.05447 9.62363 11.09246 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.006812 C = 0.005470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.749102 B = 4109.705193 C = 5117.604938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C 0.182 3.818 4 H 0.027 0.973 5 C -0.537 4.537 6 H 0.081 0.919 7 C 0.071 3.929 8 N -0.900 5.900 9 Si 0.886 3.114 10 H -0.280 1.280 11 H -0.301 1.301 12 H -0.267 1.267 13 N -0.672 5.672 14 C 0.090 3.910 15 H 0.046 0.954 16 C -0.136 4.136 17 C 0.059 3.941 18 N -0.529 5.529 19 C 0.054 3.946 20 C -0.107 4.107 21 C -0.093 4.093 22 C -0.145 4.145 23 C -0.109 4.109 24 C 0.059 3.941 25 H 0.035 0.965 26 H 0.065 0.935 27 H 0.030 0.970 28 H 0.040 0.960 29 H 0.056 0.944 30 H 0.261 0.739 31 H 0.351 0.649 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.026 0.974 37 H 0.019 0.981 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.070 0.930 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.659 7.203 -9.910 13.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C 0.073 3.927 4 H 0.045 0.955 5 C -0.576 4.576 6 H 0.099 0.901 7 C -0.131 4.131 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.230 1.230 12 H -0.192 1.192 13 N -0.305 5.305 14 C -0.021 4.021 15 H 0.064 0.936 16 C -0.195 4.195 17 C -0.069 4.069 18 N -0.254 5.254 19 C -0.074 4.074 20 C -0.145 4.145 21 C -0.112 4.112 22 C -0.202 4.202 23 C -0.147 4.147 24 C -0.069 4.069 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.171 0.829 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.044 0.956 37 H 0.037 0.963 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.077 0.923 47 H 0.088 0.912 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.160 6.534 -9.719 12.798 hybrid contribution 0.598 0.611 0.991 1.309 sum -4.562 7.145 -8.728 12.167 Atomic orbital electron populations 1.21729 0.97756 0.99262 1.01216 1.21796 0.93707 0.99679 1.00050 1.19569 0.93976 0.90334 0.88854 0.95531 1.21877 0.90540 1.37824 1.07314 0.90134 1.24998 0.94641 0.95559 0.97863 1.69916 1.08006 1.45397 1.30511 0.86884 0.80428 0.79938 0.81063 1.20717 1.22954 1.19165 1.60750 1.55790 1.05267 1.08712 1.21317 0.96206 0.90724 0.93876 0.93560 1.21775 0.97602 0.99066 1.01029 1.22267 0.91756 0.96314 0.96586 1.61759 1.02093 1.60086 1.01440 1.22191 0.89902 0.95855 0.99413 1.21582 0.96526 1.02549 0.93856 1.21187 0.94684 0.99282 0.96009 1.21799 0.97427 1.01285 0.99688 1.21624 0.93638 1.01880 0.97585 1.22022 0.98473 0.96558 0.89830 0.94578 0.91612 0.95119 0.94137 0.92564 0.92937 0.82872 0.92600 0.92835 0.93934 0.90796 0.95602 0.96262 0.88767 0.90326 0.91936 0.92304 0.93315 0.92897 0.92406 0.90877 0.92315 0.91183 0.95822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.85 37.16 0.37 -2.31 16 2 C -0.11 -2.54 5.12 -26.73 -0.14 -2.67 16 3 C 0.18 4.21 1.39 -68.86 -0.10 4.11 16 4 H 0.03 0.66 6.08 -51.93 -0.32 0.34 16 5 C -0.54 -14.42 8.90 -34.44 -0.31 -14.72 16 6 H 0.08 2.31 7.08 -52.48 -0.37 1.94 16 7 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 8 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 9 Si 0.89 22.23 24.40 -169.99 -4.15 18.08 16 10 H -0.28 -6.94 6.84 56.52 0.39 -6.56 16 11 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 12 H -0.27 -6.48 6.53 56.52 0.37 -6.11 16 13 N -0.67 -13.38 5.37 -100.95 -0.54 -13.92 16 14 C 0.09 1.59 2.25 -67.71 -0.15 1.44 16 15 H 0.05 0.95 6.23 -51.93 -0.32 0.63 16 16 C -0.14 -2.15 9.35 37.16 0.35 -1.80 16 17 C 0.06 0.89 4.61 -3.82 -0.02 0.87 16 18 N -0.53 -8.22 3.48 -234.67 -0.82 -9.03 16 19 C 0.05 0.90 5.29 -3.84 -0.02 0.88 16 20 C -0.11 -1.72 5.38 -26.65 -0.14 -1.87 16 21 C -0.09 -1.21 2.79 -90.50 -0.25 -1.47 16 22 C -0.14 -1.72 9.20 37.16 0.34 -1.38 16 23 C -0.11 -1.36 5.38 -26.65 -0.14 -1.50 16 24 C 0.06 0.77 5.46 -3.84 -0.02 0.75 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.19 7.58 -51.93 -0.39 0.80 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.96 3.22 -51.93 -0.17 0.79 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 31 H 0.35 7.35 7.03 -39.29 -0.28 7.08 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.91 7.38 -51.93 -0.38 0.53 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 1.06 7.99 -51.92 -0.41 0.65 16 36 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 37 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 1.89 5.42 -51.93 -0.28 1.61 16 39 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.85 8.02 -51.93 -0.42 0.44 16 48 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 352.69 15.07 5.31 5.31 Total: -1.00 -27.74 352.69 -9.04 -36.78 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -9.29 Total: 6.75 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -0.33 Total: -17.74 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.59 Total: -49.19 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.15 Total: 18.08 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.74 -9.04 -36.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155462.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.851 kcal (2) G-P(sol) polarization free energy of solvation -27.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds