Wall clock time and date at job start Mon Mar 30 2020 19:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47402 * 2 1 4 4 H 1.09002 * 109.47193 * 302.49692 * 3 2 1 5 5 C 1.50701 * 109.47539 * 182.49806 * 3 2 1 6 6 H 1.08000 * 119.99656 * 243.47685 * 5 3 2 7 7 C 1.37881 * 120.00074 * 63.47242 * 5 3 2 8 8 N 1.31518 * 119.99869 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99873 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47071 * 60.00316 * 9 7 5 11 11 H 1.48501 * 109.46637 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46995 * 299.99848 * 9 7 5 13 13 N 1.46898 * 109.47025 * 62.49454 * 3 2 1 14 14 C 1.46903 * 111.00125 * 207.85186 * 13 3 2 15 15 H 1.08996 * 109.47235 * 320.96307 * 14 13 3 16 16 C 1.53007 * 109.46710 * 80.95736 * 14 13 3 17 17 C 1.53000 * 109.47312 * 200.95680 * 14 13 3 18 18 N 1.46893 * 109.47226 * 57.22508 * 17 14 13 19 19 C 1.46857 * 110.99695 * 52.96698 * 18 17 14 20 20 C 1.53036 * 109.52307 * 185.84102 * 19 18 17 21 21 C 1.53125 * 109.27569 * 300.81544 * 20 19 18 22 22 C 1.53002 * 109.57232 * 177.58972 * 21 20 19 23 23 C 1.53114 * 109.15970 * 57.65973 * 21 20 19 24 24 C 1.46846 * 111.00254 * 177.17068 * 18 17 14 25 25 H 1.09000 * 109.46699 * 303.85706 * 1 2 3 26 26 H 1.08990 * 109.47247 * 63.85728 * 1 2 3 27 27 H 1.09006 * 109.47105 * 183.86329 * 1 2 3 28 28 H 1.08998 * 109.46762 * 240.00062 * 2 1 3 29 29 H 1.08998 * 109.47241 * 120.00357 * 2 1 3 30 30 H 0.96996 * 119.99771 * 180.02562 * 8 7 5 31 31 H 1.00901 * 111.00160 * 83.90464 * 13 3 2 32 32 H 1.09001 * 109.47003 * 303.97902 * 16 14 13 33 33 H 1.08997 * 109.46867 * 63.98154 * 16 14 13 34 34 H 1.08998 * 109.46591 * 183.97998 * 16 14 13 35 35 H 1.08994 * 109.47406 * 177.23041 * 17 14 13 36 36 H 1.09000 * 109.46777 * 297.22890 * 17 14 13 37 37 H 1.09004 * 109.45677 * 305.84905 * 19 18 17 38 38 H 1.08992 * 109.46510 * 65.81912 * 19 18 17 39 39 H 1.08998 * 109.50245 * 180.87953 * 20 19 18 40 40 H 1.09000 * 109.50807 * 60.75845 * 20 19 18 41 41 H 1.08992 * 109.52276 * 297.75645 * 21 20 19 42 42 H 1.08997 * 109.47511 * 300.28932 * 22 21 20 43 43 H 1.09006 * 109.46763 * 60.28794 * 22 21 20 44 44 H 1.09000 * 109.46637 * 180.28302 * 22 21 20 45 45 H 1.09001 * 109.50646 * 182.40099 * 23 21 20 46 46 H 1.09003 * 109.51100 * 62.28216 * 23 21 20 47 47 H 1.08999 * 109.46399 * 294.18100 * 24 18 17 48 48 H 1.09002 * 109.45732 * 54.16038 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6407 1.9690 -0.8668 5 6 3.5458 1.4429 -0.0619 6 1 4.1198 1.8486 0.7581 7 6 4.1906 0.9254 -1.1653 8 7 3.4915 0.4318 -2.1640 9 14 6.0570 0.9254 -1.2417 10 1 6.5989 0.1360 -0.1067 11 1 6.4999 0.3191 -2.5230 12 1 6.5559 2.3215 -1.1567 13 7 1.6003 2.1173 1.2284 14 6 1.4640 3.5642 1.0143 15 1 2.2752 3.9152 0.3766 16 6 0.1221 3.8556 0.3392 17 6 1.5248 4.2871 2.3614 18 7 2.7847 3.9542 3.0393 19 6 3.9364 4.2104 2.1648 20 6 5.2153 3.7180 2.8460 21 6 5.3911 4.4491 4.1799 22 6 6.6356 3.9189 4.8948 23 6 4.1570 4.2056 5.0529 24 6 2.9087 4.6838 4.3076 25 1 -0.3633 0.5725 0.8534 26 1 -0.3633 0.4528 -0.9224 27 1 -0.3633 -1.0254 0.0692 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.9451 0.0674 -2.9401 31 1 2.2293 1.9227 1.9930 32 1 0.0497 3.2849 -0.5866 33 1 -0.6903 3.5693 1.0071 34 1 0.0513 4.9202 0.1163 35 1 1.4731 5.3636 2.1987 36 1 0.6849 3.9725 2.9807 37 1 3.8007 3.6814 1.2214 38 1 4.0159 5.2803 1.9729 39 1 6.0717 3.9224 2.2034 40 1 5.1422 2.6454 3.0257 41 1 5.5032 5.5178 3.9976 42 1 6.5236 2.8497 5.0747 43 1 7.5137 4.0926 4.2727 44 1 6.7563 4.4368 5.8463 45 1 4.2571 4.7583 5.9870 46 1 4.0671 3.1407 5.2673 47 1 2.9930 5.7516 4.1057 48 1 2.0266 4.4986 4.9207 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155463.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:39:05 Heat of formation + Delta-G solvation = -22.411103 kcal Electronic energy + Delta-G solvation = -22632.841412 eV Core-core repulsion = 19721.406192 eV Total energy + Delta-G solvation = -2911.435220 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.18686 -36.70173 -34.53781 -32.66714 -31.35599 -30.56294 -29.05945 -27.99408 -25.82766 -24.59688 -23.12001 -22.56938 -21.60153 -19.63645 -19.41817 -19.01197 -16.59223 -15.73659 -15.18047 -14.78076 -14.47354 -14.22032 -14.18703 -13.81662 -13.34321 -13.05762 -12.88298 -12.69835 -12.16938 -12.05015 -11.91739 -11.63695 -11.49448 -11.35526 -11.28438 -11.05446 -10.97915 -10.93908 -10.69585 -10.56699 -10.48498 -10.31939 -10.07800 -9.99307 -9.76533 -9.46369 -9.36845 -8.82849 -8.30535 -7.94136 -7.05133 -5.92620 -4.03505 3.30534 3.36115 3.38430 4.20806 4.44484 4.88593 4.95704 4.98590 5.26190 5.33087 5.42726 5.47541 5.57246 5.66495 5.70656 5.77776 5.79941 5.88029 5.90654 6.00044 6.01731 6.10719 6.15092 6.20708 6.26517 6.28945 6.39935 6.44128 6.51421 6.58938 6.62953 6.68360 6.76981 6.82127 6.90448 7.24373 7.26369 7.45462 7.48335 7.58408 7.72000 7.88108 8.16825 8.32685 8.47301 8.90972 9.15238 9.63570 11.08391 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.013881 B = 0.007829 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.619569 B = 3575.812410 C = 5015.364751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 C 0.214 3.786 4 H 0.031 0.969 5 C -0.540 4.540 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.881 3.119 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.681 5.681 14 C 0.088 3.912 15 H 0.043 0.957 16 C -0.135 4.135 17 C 0.059 3.941 18 N -0.530 5.530 19 C 0.040 3.960 20 C -0.110 4.110 21 C -0.094 4.094 22 C -0.145 4.145 23 C -0.109 4.109 24 C 0.058 3.942 25 H 0.052 0.948 26 H 0.033 0.967 27 H 0.021 0.979 28 H 0.079 0.921 29 H 0.030 0.970 30 H 0.260 0.740 31 H 0.343 0.657 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.039 0.961 35 H 0.024 0.976 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.020 0.980 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.059 0.941 46 H 0.072 0.928 47 H 0.024 0.976 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.167 8.215 10.825 13.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.140 4.140 3 C 0.106 3.894 4 H 0.049 0.951 5 C -0.579 4.579 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.709 3.291 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.314 5.314 14 C -0.023 4.023 15 H 0.061 0.939 16 C -0.194 4.194 17 C -0.069 4.069 18 N -0.254 5.254 19 C -0.087 4.087 20 C -0.147 4.147 21 C -0.112 4.112 22 C -0.202 4.202 23 C -0.147 4.147 24 C -0.070 4.070 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.098 0.902 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.162 0.838 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.042 0.958 36 H 0.094 0.906 37 H 0.126 0.874 38 H 0.038 0.962 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.090 0.910 47 H 0.042 0.958 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.822 7.500 10.640 13.043 hybrid contribution 2.102 1.135 -0.434 2.428 sum 1.280 8.635 10.206 13.430 Atomic orbital electron populations 1.21708 0.99104 0.98255 1.00398 1.21428 0.92015 0.99542 1.01000 1.19134 0.92226 0.90851 0.87202 0.95082 1.21949 0.92749 1.39977 1.03198 0.92200 1.24933 0.97535 0.95258 0.95776 1.69900 1.34925 1.40420 1.07282 0.86836 0.86799 0.78208 0.77237 1.20260 1.21468 1.20443 1.60852 1.55345 1.05508 1.09671 1.21364 0.96474 0.91173 0.93269 0.93915 1.21760 0.97438 0.99127 1.01035 1.22291 0.91708 0.96639 0.96244 1.61845 1.02180 1.57134 1.04268 1.22414 0.89899 0.98250 0.98138 1.21614 0.96772 1.01258 0.95103 1.21193 0.94722 0.99448 0.95883 1.21807 0.97420 1.01292 0.99714 1.21620 0.93665 1.02171 0.97209 1.22025 0.98299 0.94884 0.91798 0.92867 0.94771 0.95946 0.90224 0.95141 0.93033 0.83765 0.92232 0.92941 0.94212 0.95806 0.90633 0.87445 0.96184 0.92067 0.90669 0.92142 0.92490 0.92946 0.93186 0.92261 0.90953 0.95757 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.83 37.16 0.37 -2.48 16 2 C -0.10 -2.43 5.47 -26.73 -0.15 -2.57 16 3 C 0.21 5.17 1.72 -68.87 -0.12 5.06 16 4 H 0.03 0.84 6.81 -51.93 -0.35 0.49 16 5 C -0.54 -14.04 7.77 -34.44 -0.27 -14.31 16 6 H 0.06 1.53 6.15 -52.49 -0.32 1.21 16 7 C 0.07 1.81 5.31 -17.82 -0.09 1.72 16 8 N -0.89 -25.01 11.57 55.43 0.64 -24.37 16 9 Si 0.88 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.68 -14.05 5.32 -100.95 -0.54 -14.59 16 14 C 0.09 1.61 1.89 -67.71 -0.13 1.49 16 15 H 0.04 0.89 6.01 -51.93 -0.31 0.58 16 16 C -0.14 -2.27 9.38 37.16 0.35 -1.93 16 17 C 0.06 0.92 4.73 -3.83 -0.02 0.90 16 18 N -0.53 -8.21 3.70 -234.67 -0.87 -9.08 16 19 C 0.04 0.67 4.99 -3.83 -0.02 0.65 16 20 C -0.11 -1.68 5.38 -26.65 -0.14 -1.82 16 21 C -0.09 -1.18 2.79 -90.50 -0.25 -1.43 16 22 C -0.14 -1.61 9.20 37.16 0.34 -1.27 16 23 C -0.11 -1.30 5.38 -26.65 -0.14 -1.45 16 24 C 0.06 0.75 5.46 -3.83 -0.02 0.73 16 25 H 0.05 1.07 7.56 -51.93 -0.39 0.68 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 2.13 6.30 -51.93 -0.33 1.80 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.34 7.33 7.05 -39.29 -0.28 7.05 16 32 H 0.06 1.11 7.12 -51.93 -0.37 0.74 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.11 2.13 3.70 -51.93 -0.19 1.94 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.07 0.85 8.12 -51.93 -0.42 0.42 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -26.23 356.29 -10.00 -36.23 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -9.29 Total: 7.20 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -0.30 Total: -16.72 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.76 Total: -48.03 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -26.23 -10.00 -36.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155463.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.817 kcal (2) G-P(sol) polarization free energy of solvation -26.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds