Wall clock time and date at job start Mon Mar 30 2020 19:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47223 * 2 1 4 4 H 1.09007 * 109.47285 * 303.31663 * 3 2 1 5 5 C 1.50706 * 109.47271 * 183.32087 * 3 2 1 6 6 H 1.07996 * 119.99775 * 242.88927 * 5 3 2 7 7 C 1.37868 * 119.99935 * 62.89199 * 5 3 2 8 8 N 1.31518 * 119.99997 * 193.90028 * 7 5 3 9 9 Si 1.86806 * 120.00285 * 13.90225 * 7 5 3 10 10 H 1.48499 * 109.47038 * 87.64324 * 9 7 5 11 11 H 1.48504 * 109.47071 * 207.64714 * 9 7 5 12 12 H 1.48496 * 109.46954 * 327.64487 * 9 7 5 13 13 N 1.46897 * 109.47485 * 63.31551 * 3 2 1 14 14 C 1.46893 * 111.00543 * 210.57658 * 13 3 2 15 15 C 1.53000 * 109.47489 * 308.93757 * 14 13 3 16 16 C 1.53009 * 109.46962 * 68.93388 * 14 13 3 17 17 C 1.46905 * 110.99648 * 86.62133 * 13 3 2 18 18 H 1.08999 * 109.46783 * 68.66715 * 17 13 3 19 19 C 1.53003 * 109.47066 * 188.66333 * 17 13 3 20 20 C 1.53003 * 109.46834 * 180.02562 * 19 17 13 21 21 C 1.52998 * 109.46926 * 300.00133 * 20 19 17 22 22 H 1.09001 * 109.47682 * 300.00205 * 21 20 19 23 23 N 1.46905 * 109.47228 * 180.02562 * 21 20 19 24 24 C 1.53003 * 109.47473 * 60.00257 * 21 20 19 25 25 C 1.52997 * 109.47266 * 308.67186 * 17 13 3 26 26 H 1.08996 * 109.47288 * 304.89225 * 1 2 3 27 27 H 1.09005 * 109.47196 * 64.88945 * 1 2 3 28 28 H 1.08997 * 109.47499 * 184.88690 * 1 2 3 29 29 H 1.09003 * 109.47297 * 240.00441 * 2 1 3 30 30 H 1.08993 * 109.47198 * 119.99847 * 2 1 3 31 31 H 0.97003 * 120.00003 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47638 * 188.93166 * 14 13 3 33 33 H 1.08998 * 109.46822 * 65.48767 * 15 14 13 34 34 H 1.08996 * 109.47123 * 185.49297 * 15 14 13 35 35 H 1.09002 * 109.46559 * 305.49116 * 15 14 13 36 36 H 1.09000 * 109.47028 * 64.74677 * 16 14 13 37 37 H 1.08996 * 109.47051 * 184.74272 * 16 14 13 38 38 H 1.08997 * 109.46913 * 304.75151 * 16 14 13 39 39 H 1.08999 * 109.47252 * 300.00244 * 19 17 13 40 40 H 1.09001 * 109.46710 * 60.00959 * 19 17 13 41 41 H 1.09002 * 109.46408 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.47317 * 60.00197 * 20 19 17 43 43 H 1.00900 * 110.99938 * 59.99663 * 23 21 20 44 44 H 1.00898 * 110.99992 * 183.95313 * 23 21 20 45 45 H 1.08999 * 109.47252 * 180.02562 * 24 21 20 46 46 H 1.08999 * 109.47008 * 59.99791 * 24 21 20 47 47 H 1.08999 * 109.46836 * 299.99497 * 25 17 13 48 48 H 1.08995 * 109.47681 * 59.99961 * 25 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6289 1.9732 -0.8588 5 6 3.5448 1.4433 -0.0823 6 1 4.1296 1.8536 0.7276 7 6 4.1748 0.9202 -1.1915 8 7 5.4650 0.6677 -1.1570 9 14 3.1958 0.5702 -2.7435 10 1 3.1543 1.7908 -3.5883 11 1 3.8427 -0.5328 -3.4986 12 1 1.8122 0.1744 -2.3773 13 7 1.6169 2.1115 1.2374 14 6 1.4153 3.5496 1.0160 15 6 2.6509 4.1386 0.3324 16 6 0.1898 3.7615 0.1248 17 6 2.5818 1.8757 2.3198 18 1 3.5127 2.3968 2.0965 19 6 2.0077 2.3992 3.6378 20 6 3.0130 2.1541 4.7649 21 6 3.2858 0.6537 4.8876 22 1 2.3550 0.1321 5.1111 23 7 4.2505 0.4182 5.9702 24 6 3.8598 0.1301 3.5695 25 6 2.8541 0.3751 2.4422 26 1 -0.3634 0.5878 0.8429 27 1 -0.3634 0.4361 -0.9306 28 1 -0.3634 -1.0239 0.0875 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 5.9082 0.2993 -1.9373 32 1 1.2584 4.0463 1.9735 33 1 2.7518 3.7122 -0.6656 34 1 2.5428 5.2205 0.2562 35 1 3.5382 3.9025 0.9199 36 1 -0.7032 3.4183 0.6472 37 1 0.0892 4.8214 -0.1087 38 1 0.3102 3.1957 -0.7990 39 1 1.8138 3.4683 3.5505 40 1 1.0768 1.8780 3.8611 41 1 2.6038 2.5267 5.7040 42 1 3.9437 2.6755 4.5415 43 1 3.8940 0.7554 6.8518 44 1 4.4963 -0.5586 6.0293 45 1 4.0537 -0.9389 3.6568 46 1 4.7905 0.6515 3.3461 47 1 1.9232 -0.1460 2.6655 48 1 3.2631 0.0022 1.5032 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159959.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:39:33 Heat of formation + Delta-G solvation = 7.487917 kcal Electronic energy + Delta-G solvation = -23553.468234 eV Core-core repulsion = 20643.329533 eV Total energy + Delta-G solvation = -2910.138701 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.51607 -36.91031 -33.72288 -32.82335 -31.86970 -30.13626 -29.59595 -27.27072 -26.43566 -25.68858 -22.84659 -22.08047 -20.80759 -20.70128 -19.10374 -18.07218 -16.93790 -15.39064 -15.28173 -14.94260 -14.71783 -14.28940 -13.97288 -13.59622 -13.38224 -12.92485 -12.69246 -12.44756 -12.20384 -11.93634 -11.82889 -11.67807 -11.48069 -11.22544 -11.08805 -10.95866 -10.70296 -10.63854 -10.59239 -10.51194 -10.41501 -10.10016 -9.91785 -9.53107 -9.44603 -9.36970 -9.23659 -8.63035 -8.49998 -8.34056 -7.03629 -6.07980 -4.00641 3.28616 3.38572 3.42656 4.43561 4.62433 4.93289 5.17748 5.22996 5.24575 5.60614 5.67581 5.74112 5.86247 5.93926 5.96658 6.05549 6.10536 6.13438 6.19131 6.22593 6.26300 6.30957 6.33952 6.40903 6.45165 6.50135 6.59875 6.61880 6.70550 6.78247 6.80606 6.84496 6.88647 6.92815 7.15560 7.19365 7.26792 7.31672 7.34657 7.42633 7.50474 7.60056 7.69640 8.22613 8.32099 8.57473 8.99546 9.58199 11.03241 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.017124 B = 0.008304 C = 0.007089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.695876 B = 3371.152233 C = 3948.740203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.137 4.137 3 C 0.183 3.817 4 H 0.030 0.970 5 C -0.539 4.539 6 H 0.088 0.912 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.848 3.152 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.244 1.244 13 N -0.519 5.519 14 C 0.078 3.922 15 C -0.170 4.170 16 C -0.139 4.139 17 C 0.101 3.899 18 H 0.055 0.945 19 C -0.113 4.113 20 C -0.105 4.105 21 C 0.091 3.909 22 H 0.028 0.972 23 N -0.850 5.850 24 C -0.108 4.108 25 C -0.120 4.120 26 H 0.060 0.940 27 H 0.033 0.967 28 H 0.028 0.972 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.261 0.739 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.030 0.970 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.045 0.955 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.066 0.934 43 H 0.333 0.667 44 H 0.337 0.663 45 H 0.050 0.950 46 H 0.068 0.932 47 H 0.049 0.951 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.619 1.427 8.649 11.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C 0.076 3.924 4 H 0.048 0.952 5 C -0.576 4.576 6 H 0.105 0.895 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.676 3.324 10 H -0.210 1.210 11 H -0.218 1.218 12 H -0.168 1.168 13 N -0.242 5.242 14 C -0.031 4.031 15 C -0.228 4.228 16 C -0.196 4.196 17 C -0.008 4.008 18 H 0.073 0.927 19 C -0.152 4.152 20 C -0.144 4.144 21 C -0.019 4.019 22 H 0.046 0.954 23 N -0.379 5.379 24 C -0.146 4.146 25 C -0.157 4.157 26 H 0.080 0.920 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.145 0.855 44 H 0.149 0.851 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.067 0.933 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.446 1.628 8.264 11.242 hybrid contribution -0.279 -0.449 -0.848 0.999 sum -7.724 1.180 7.416 10.773 Atomic orbital electron populations 1.21718 0.98313 0.99038 1.00818 1.22454 0.93481 0.99588 1.01923 1.19587 0.94368 0.90601 0.87869 0.95244 1.21708 0.90334 1.40284 1.05324 0.89451 1.24899 0.94498 0.94622 0.98366 1.69974 1.09820 1.43314 1.29707 0.87533 0.82459 0.77987 0.84429 1.20988 1.21806 1.16780 1.62494 1.45752 1.08354 1.07643 1.21565 0.94224 0.89883 0.97473 1.22427 0.99036 0.98080 1.03279 1.21829 0.97796 0.99849 1.00152 1.21356 0.94334 0.96104 0.88965 0.92689 1.21668 0.98174 1.00298 0.95019 1.21475 0.99817 0.95283 0.97817 1.21432 0.92372 0.96172 0.91966 0.95410 1.58758 1.47272 1.23926 1.07907 1.21556 1.00133 0.99664 0.93264 1.22138 0.97447 0.95927 1.00219 0.92049 0.94825 0.95320 0.92988 0.90786 0.92894 0.91648 0.90996 0.95110 0.92293 0.93003 0.93608 0.92510 0.92569 0.92250 0.93234 0.91505 0.85546 0.85051 0.93146 0.91278 0.93275 0.86433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.85 37.16 0.37 -2.20 16 2 C -0.14 -2.83 4.44 -26.73 -0.12 -2.95 16 3 C 0.18 3.93 0.56 -68.86 -0.04 3.89 16 4 H 0.03 0.68 4.24 -51.92 -0.22 0.45 16 5 C -0.54 -13.35 4.40 -34.44 -0.15 -13.50 16 6 H 0.09 2.36 4.83 -52.49 -0.25 2.11 16 7 C 0.08 2.11 5.35 -17.82 -0.10 2.02 16 8 N -0.89 -25.74 13.96 55.43 0.77 -24.97 16 9 Si 0.85 20.34 25.84 -169.99 -4.39 15.95 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.24 -5.51 5.21 56.52 0.29 -5.21 16 13 N -0.52 -9.77 3.53 -212.21 -0.75 -10.52 16 14 C 0.08 1.35 2.76 -67.71 -0.19 1.17 16 15 C -0.17 -3.22 7.74 37.16 0.29 -2.93 16 16 C -0.14 -2.21 9.27 37.16 0.34 -1.86 16 17 C 0.10 1.85 1.20 -67.71 -0.08 1.77 16 18 H 0.06 1.18 4.62 -51.93 -0.24 0.94 16 19 C -0.11 -1.76 5.13 -26.73 -0.14 -1.90 16 20 C -0.11 -1.53 5.50 -26.73 -0.15 -1.67 16 21 C 0.09 1.31 3.24 -67.71 -0.22 1.09 16 22 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 23 N -0.85 -10.71 9.25 -4.66 -0.04 -10.75 16 24 C -0.11 -1.83 5.47 -26.71 -0.15 -1.97 16 25 C -0.12 -2.23 3.28 -26.71 -0.09 -2.32 16 26 H 0.06 1.09 7.56 -51.93 -0.39 0.69 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.05 1.16 4.40 -51.93 -0.23 0.93 16 30 H 0.07 1.52 4.07 -51.93 -0.21 1.31 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.07 1.07 5.94 -51.93 -0.31 0.76 16 33 H 0.07 1.54 6.22 -51.93 -0.32 1.22 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 1.21 5.92 -51.93 -0.31 0.91 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.99 6.31 -51.93 -0.33 0.66 16 39 H 0.06 0.85 6.28 -51.93 -0.33 0.52 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.33 3.52 9.04 -39.29 -0.36 3.16 16 44 H 0.34 3.82 8.99 -39.29 -0.35 3.47 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 47 H 0.05 0.89 7.41 -51.93 -0.38 0.50 16 48 H 0.12 2.61 4.10 -51.93 -0.21 2.40 16 LS Contribution 327.99 15.07 4.94 4.94 Total: -1.00 -26.53 327.99 -8.22 -34.74 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -8.34 Total: 11.98 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -0.41 Total: -21.37 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -0.02 Total: -46.24 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.39 Total: 15.95 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.53 -8.22 -34.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159959.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.233 kcal (2) G-P(sol) polarization free energy of solvation -26.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds