Wall clock time and date at job start Mon Mar 30 2020 19:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47223 * 2 1 4 4 H 1.09007 * 109.47285 * 303.31663 * 3 2 1 5 5 C 1.50706 * 109.47271 * 183.32087 * 3 2 1 6 6 H 1.07996 * 119.99775 * 242.88927 * 5 3 2 7 7 C 1.37868 * 119.99935 * 62.89199 * 5 3 2 8 8 N 1.31518 * 119.99997 * 193.90028 * 7 5 3 9 9 Si 1.86806 * 120.00285 * 13.90225 * 7 5 3 10 10 H 1.48499 * 109.47038 * 87.64324 * 9 7 5 11 11 H 1.48504 * 109.47071 * 207.64714 * 9 7 5 12 12 H 1.48496 * 109.46954 * 327.64487 * 9 7 5 13 13 N 1.46897 * 109.47485 * 63.31551 * 3 2 1 14 14 C 1.46893 * 111.00543 * 210.57658 * 13 3 2 15 15 C 1.53000 * 109.47489 * 308.93757 * 14 13 3 16 16 C 1.53009 * 109.46962 * 68.93388 * 14 13 3 17 17 C 1.46905 * 110.99648 * 86.62133 * 13 3 2 18 18 H 1.08999 * 109.46783 * 68.66715 * 17 13 3 19 19 C 1.53003 * 109.47066 * 188.66333 * 17 13 3 20 20 C 1.53003 * 109.46834 * 180.02562 * 19 17 13 21 21 C 1.52998 * 109.46926 * 300.00133 * 20 19 17 22 22 H 1.09001 * 109.47682 * 300.00205 * 21 20 19 23 23 N 1.46905 * 109.47228 * 180.02562 * 21 20 19 24 24 C 1.53003 * 109.47473 * 60.00257 * 21 20 19 25 25 C 1.52997 * 109.47266 * 308.67186 * 17 13 3 26 26 H 1.08996 * 109.47288 * 304.89225 * 1 2 3 27 27 H 1.09005 * 109.47196 * 64.88945 * 1 2 3 28 28 H 1.08997 * 109.47499 * 184.88690 * 1 2 3 29 29 H 1.09003 * 109.47297 * 240.00441 * 2 1 3 30 30 H 1.08993 * 109.47198 * 119.99847 * 2 1 3 31 31 H 0.97003 * 120.00003 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47638 * 188.93166 * 14 13 3 33 33 H 1.08998 * 109.46822 * 65.48767 * 15 14 13 34 34 H 1.08996 * 109.47123 * 185.49297 * 15 14 13 35 35 H 1.09002 * 109.46559 * 305.49116 * 15 14 13 36 36 H 1.09000 * 109.47028 * 64.74677 * 16 14 13 37 37 H 1.08996 * 109.47051 * 184.74272 * 16 14 13 38 38 H 1.08997 * 109.46913 * 304.75151 * 16 14 13 39 39 H 1.08999 * 109.47252 * 300.00244 * 19 17 13 40 40 H 1.09001 * 109.46710 * 60.00959 * 19 17 13 41 41 H 1.09002 * 109.46408 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.47317 * 60.00197 * 20 19 17 43 43 H 1.00900 * 110.99938 * 59.99663 * 23 21 20 44 44 H 1.00898 * 110.99992 * 183.95313 * 23 21 20 45 45 H 1.08999 * 109.47252 * 180.02562 * 24 21 20 46 46 H 1.08999 * 109.47008 * 59.99791 * 24 21 20 47 47 H 1.08999 * 109.46836 * 299.99497 * 25 17 13 48 48 H 1.08995 * 109.47681 * 59.99961 * 25 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6289 1.9732 -0.8588 5 6 3.5448 1.4433 -0.0823 6 1 4.1296 1.8536 0.7276 7 6 4.1748 0.9202 -1.1915 8 7 5.4650 0.6677 -1.1570 9 14 3.1958 0.5702 -2.7435 10 1 3.1543 1.7908 -3.5883 11 1 3.8427 -0.5328 -3.4986 12 1 1.8122 0.1744 -2.3773 13 7 1.6169 2.1115 1.2374 14 6 1.4153 3.5496 1.0160 15 6 2.6509 4.1386 0.3324 16 6 0.1898 3.7615 0.1248 17 6 2.5818 1.8757 2.3198 18 1 3.5127 2.3968 2.0965 19 6 2.0077 2.3992 3.6378 20 6 3.0130 2.1541 4.7649 21 6 3.2858 0.6537 4.8876 22 1 2.3550 0.1321 5.1111 23 7 4.2505 0.4182 5.9702 24 6 3.8598 0.1301 3.5695 25 6 2.8541 0.3751 2.4422 26 1 -0.3634 0.5878 0.8429 27 1 -0.3634 0.4361 -0.9306 28 1 -0.3634 -1.0239 0.0875 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 5.9082 0.2993 -1.9373 32 1 1.2584 4.0463 1.9735 33 1 2.7518 3.7122 -0.6656 34 1 2.5428 5.2205 0.2562 35 1 3.5382 3.9025 0.9199 36 1 -0.7032 3.4183 0.6472 37 1 0.0892 4.8214 -0.1087 38 1 0.3102 3.1957 -0.7990 39 1 1.8138 3.4683 3.5505 40 1 1.0768 1.8780 3.8611 41 1 2.6038 2.5267 5.7040 42 1 3.9437 2.6755 4.5415 43 1 3.8940 0.7554 6.8518 44 1 4.4963 -0.5586 6.0293 45 1 4.0537 -0.9389 3.6568 46 1 4.7905 0.6515 3.3461 47 1 1.9232 -0.1460 2.6655 48 1 3.2631 0.0022 1.5032 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255159959.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:39:32 Heat of formation + Delta-G solvation = -10.287872 kcal Electronic energy + Delta-G solvation = -23554.239050 eV Core-core repulsion = 20643.329533 eV Total energy + Delta-G solvation = -2910.909517 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.03736 -38.26697 -35.38970 -34.14237 -33.76434 -31.50698 -31.00262 -28.97918 -27.91319 -27.12378 -24.56681 -23.48891 -22.35918 -22.09735 -20.50393 -19.73089 -18.75774 -16.89870 -16.79129 -16.33001 -15.95099 -15.82485 -15.60538 -15.06261 -14.91807 -14.39999 -14.32639 -14.02689 -13.69634 -13.57731 -13.34010 -13.09383 -12.93503 -12.80583 -12.65852 -12.39694 -12.27884 -12.14452 -12.11932 -11.96008 -11.90171 -11.71018 -11.41625 -11.17170 -11.12980 -11.01235 -10.86244 -10.45041 -10.17743 -9.52461 -8.69283 -8.18004 -6.10102 1.32851 1.39880 1.45985 2.41391 3.16446 3.30102 3.68431 3.90448 3.98488 4.18773 4.39116 4.43580 4.47270 4.55219 4.56965 4.61765 4.68611 4.75172 4.76122 4.78078 4.83582 4.88818 4.94675 5.04244 5.06061 5.11503 5.16871 5.19595 5.28740 5.30221 5.35152 5.42203 5.44732 5.46848 5.52756 5.63402 5.68046 5.69495 5.76019 5.84030 5.91513 6.34401 6.36518 6.57771 6.71148 6.81680 6.96092 7.50795 8.96556 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.017124 B = 0.008304 C = 0.007089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.695876 B = 3371.152233 C = 3948.740203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.138 4.138 3 C 0.190 3.810 4 H 0.024 0.976 5 C -0.507 4.507 6 H 0.056 0.944 7 C 0.022 3.978 8 N -0.943 5.943 9 Si 0.898 3.102 10 H -0.288 1.288 11 H -0.300 1.300 12 H -0.218 1.218 13 N -0.510 5.510 14 C 0.074 3.926 15 C -0.162 4.162 16 C -0.133 4.133 17 C 0.104 3.896 18 H 0.016 0.984 19 C -0.103 4.103 20 C -0.102 4.102 21 C 0.101 3.899 22 H 0.043 0.957 23 N -0.856 5.856 24 C -0.104 4.104 25 C -0.112 4.112 26 H 0.068 0.932 27 H 0.034 0.966 28 H 0.047 0.953 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.257 0.743 32 H 0.087 0.913 33 H 0.040 0.960 34 H 0.055 0.945 35 H 0.030 0.970 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.038 0.962 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.045 0.955 43 H 0.349 0.651 44 H 0.346 0.654 45 H 0.055 0.945 46 H 0.034 0.966 47 H 0.062 0.938 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.903 1.843 10.353 15.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.176 4.176 3 C 0.082 3.918 4 H 0.042 0.958 5 C -0.546 4.546 6 H 0.074 0.926 7 C -0.175 4.175 8 N -0.584 5.584 9 Si 0.724 3.276 10 H -0.214 1.214 11 H -0.227 1.227 12 H -0.140 1.140 13 N -0.232 5.232 14 C -0.035 4.035 15 C -0.220 4.220 16 C -0.190 4.190 17 C -0.005 4.005 18 H 0.034 0.966 19 C -0.141 4.141 20 C -0.140 4.140 21 C -0.010 4.010 22 H 0.061 0.939 23 N -0.387 5.387 24 C -0.142 4.142 25 C -0.149 4.149 26 H 0.087 0.913 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.064 0.936 43 H 0.163 0.837 44 H 0.159 0.841 45 H 0.074 0.926 46 H 0.053 0.947 47 H 0.080 0.920 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.764 2.052 9.987 14.827 hybrid contribution 0.810 -0.521 -1.284 1.605 sum -9.954 1.531 8.704 13.311 Atomic orbital electron populations 1.21616 0.95535 1.00517 1.01250 1.22384 0.95885 0.98275 1.01076 1.19435 0.91578 0.91711 0.89077 0.95845 1.21897 0.92314 1.37049 1.03347 0.92633 1.25556 0.95111 0.95590 1.01272 1.70117 1.11685 1.46334 1.30288 0.86733 0.82554 0.77197 0.81077 1.21448 1.22724 1.14042 1.62572 1.44932 1.09356 1.06351 1.21751 0.94133 0.88805 0.98816 1.22315 0.98957 0.99717 1.01042 1.21779 0.97204 1.01116 0.98913 1.21312 0.92930 0.95589 0.90620 0.96619 1.21571 0.98620 1.00769 0.93150 1.21446 0.98721 0.95198 0.98656 1.21244 0.92939 0.96068 0.90782 0.93917 1.58651 1.46950 1.24832 1.08309 1.21465 0.98297 0.99746 0.94719 1.21928 0.97979 0.96143 0.98882 0.91257 0.94645 0.93406 0.94788 0.90876 0.93439 0.89500 0.94070 0.92556 0.95050 0.91387 0.91485 0.94291 0.91685 0.90895 0.90353 0.93612 0.83740 0.84126 0.92615 0.94713 0.91955 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.37 9.85 71.98 0.71 -3.66 16 2 C -0.14 -5.60 4.44 30.59 0.14 -5.46 16 3 C 0.19 8.14 0.56 44.17 0.02 8.16 16 4 H 0.02 1.06 4.24 -2.38 -0.01 1.05 16 5 C -0.51 -26.28 4.40 25.60 0.11 -26.17 16 6 H 0.06 3.22 4.83 -2.91 -0.01 3.21 16 7 C 0.02 1.23 5.35 84.65 0.45 1.68 16 8 N -0.94 -57.76 13.96 21.44 0.30 -57.46 16 9 Si 0.90 43.09 25.84 68.60 1.77 44.86 16 10 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 11 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 12 H -0.22 -9.45 5.21 99.48 0.52 -8.93 16 13 N -0.51 -18.57 3.53 -825.30 -2.91 -21.48 16 14 C 0.07 2.42 2.76 44.92 0.12 2.55 16 15 C -0.16 -6.13 7.74 71.98 0.56 -5.57 16 16 C -0.13 -3.80 9.27 71.99 0.67 -3.14 16 17 C 0.10 3.81 1.20 44.91 0.05 3.86 16 18 H 0.02 0.72 4.62 -2.39 -0.01 0.71 16 19 C -0.10 -2.94 5.13 30.60 0.16 -2.78 16 20 C -0.10 -2.72 5.50 30.59 0.17 -2.55 16 21 C 0.10 2.69 3.24 44.91 0.15 2.84 16 22 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 23 N -0.86 -19.82 9.25 -168.67 -1.56 -21.38 16 24 C -0.10 -3.55 5.47 30.61 0.17 -3.38 16 25 C -0.11 -4.18 3.28 30.61 0.10 -4.08 16 26 H 0.07 2.19 7.56 -2.39 -0.02 2.17 16 27 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.03 1.48 4.40 -2.39 -0.01 1.47 16 30 H 0.07 2.97 4.07 -2.39 -0.01 2.96 16 31 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.09 2.55 5.94 -2.39 -0.01 2.53 16 33 H 0.04 1.79 6.22 -2.39 -0.01 1.77 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.03 1.33 5.92 -2.39 -0.01 1.32 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.04 1.26 6.31 -2.39 -0.02 1.24 16 39 H 0.06 1.76 6.28 -2.39 -0.01 1.74 16 40 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.35 6.32 9.04 -89.69 -0.81 5.51 16 44 H 0.35 7.16 8.99 -89.70 -0.81 6.36 16 45 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.06 2.16 7.41 -2.39 -0.02 2.14 16 48 H 0.08 3.51 4.10 -2.39 -0.01 3.50 16 Total: -1.00 -60.77 327.99 0.33 -60.44 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: -0.84 Total: 32.73 kcal Atomic # 6 Polarization: -41.28 SS G_CDS: 3.58 Total: -37.70 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -4.17 Total: -100.32 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.77 Total: 44.86 kcal Total: -60.77 0.33 -60.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159959.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.147 kcal (2) G-P(sol) polarization free energy of solvation -60.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds