Wall clock time and date at job start Mon Mar 30 2020 19:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46738 * 2 1 4 4 H 1.08998 * 109.46604 * 178.56947 * 3 2 1 5 5 C 1.50699 * 109.47229 * 298.56770 * 3 2 1 6 6 H 1.08003 * 119.99640 * 114.30577 * 5 3 2 7 7 C 1.37876 * 120.00147 * 294.31127 * 5 3 2 8 8 N 1.31515 * 120.00018 * 347.47409 * 7 5 3 9 9 Si 1.86794 * 120.00060 * 167.19365 * 7 5 3 10 10 H 1.48509 * 109.46831 * 89.99999 * 9 7 5 11 11 H 1.48499 * 109.47387 * 209.99922 * 9 7 5 12 12 H 1.48506 * 109.47444 * 330.00462 * 9 7 5 13 13 N 1.46895 * 109.47145 * 58.57072 * 3 2 1 14 14 C 1.44278 * 111.00043 * 60.01248 * 13 3 2 15 15 C 1.54071 * 111.98407 * 219.30895 * 14 13 3 16 16 C 1.54290 * 112.28767 * 318.91939 * 15 14 13 17 17 C 1.50468 * 113.03143 * 318.29897 * 16 15 14 18 18 C 1.54510 * 108.85006 * 92.15958 * 17 16 15 19 19 H 1.08994 * 109.00001 * 43.31224 * 18 17 16 20 20 C 1.53004 * 109.05559 * 162.26575 * 18 17 16 21 21 C 1.53005 * 109.46752 * 297.08376 * 20 18 17 22 22 C 1.52995 * 109.46971 * 180.02562 * 21 20 18 23 23 N 1.46904 * 109.47045 * 179.97438 * 22 21 20 24 24 C 1.45869 * 111.58866 * 282.80096 * 18 17 16 25 25 H 1.08994 * 109.47221 * 65.05920 * 1 2 3 26 26 H 1.09006 * 109.46481 * 185.05767 * 1 2 3 27 27 H 1.08997 * 109.47107 * 305.05105 * 1 2 3 28 28 H 1.09004 * 109.47463 * 240.00347 * 2 1 3 29 29 H 1.09000 * 109.47624 * 119.99879 * 2 1 3 30 30 H 0.97003 * 120.00005 * 1.45544 * 8 7 5 31 31 H 1.08996 * 108.97818 * 339.95647 * 14 13 3 32 32 H 1.08996 * 108.97396 * 98.66802 * 14 13 3 33 33 H 1.08996 * 108.91356 * 198.19160 * 15 14 13 34 34 H 1.08996 * 108.84125 * 79.58977 * 15 14 13 35 35 H 1.08996 * 108.77254 * 197.38810 * 16 15 14 36 36 H 1.08999 * 108.68033 * 79.14889 * 16 15 14 37 37 H 1.08997 * 109.57749 * 332.34636 * 17 16 15 38 38 H 1.09004 * 109.57282 * 211.96814 * 17 16 15 39 39 H 1.09005 * 109.47487 * 57.07692 * 20 18 17 40 40 H 1.08991 * 109.47038 * 177.08435 * 20 18 17 41 41 H 1.08998 * 109.47153 * 300.00144 * 21 20 18 42 42 H 1.09004 * 109.47143 * 59.99935 * 21 20 18 43 43 H 1.08997 * 109.47591 * 299.99597 * 22 21 20 44 44 H 1.09004 * 109.47273 * 59.99974 * 22 21 20 45 45 H 1.00900 * 111.00248 * 179.97438 * 23 22 21 46 46 H 1.00896 * 111.00092 * 303.95169 * 23 22 21 47 47 H 1.09000 * 108.79249 * 300.44350 * 24 18 17 48 48 H 1.08997 * 108.79138 * 182.21880 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1296 1.4427 0.0257 5 6 1.5668 2.1427 -1.2478 6 1 0.8702 2.9648 -1.1746 7 6 2.0230 1.7336 -2.4829 8 7 3.0449 0.9100 -2.5667 9 14 1.1848 2.3430 -4.0370 10 1 1.8342 3.5995 -4.4895 11 1 1.3043 1.3132 -5.1003 12 1 -0.2506 2.6009 -3.7567 13 7 1.5222 2.1449 1.1817 14 6 1.9567 1.5010 2.3975 15 6 0.8466 1.4763 3.4656 16 6 0.0619 2.8034 3.5248 17 6 0.9463 4.0157 3.4141 18 6 1.0460 4.4269 1.9281 19 1 0.0555 4.3698 1.4768 20 6 1.5518 5.8683 1.8415 21 6 0.5399 6.8046 2.5050 22 6 1.0453 8.2460 2.4179 23 7 0.0734 9.1450 3.0544 24 6 1.9562 3.5577 1.1906 25 1 -0.3633 0.4333 -0.9318 26 1 -0.3632 -1.0238 0.0906 27 1 -0.3633 0.5902 0.8413 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.4643 0.5737 -1.7593 31 1 2.2526 0.4769 2.1700 32 1 2.8185 2.0375 2.7943 33 1 1.2978 1.2887 4.4399 34 1 0.1544 0.6664 3.2353 35 1 -0.4791 2.8492 4.4699 36 1 -0.6590 2.8194 2.7074 37 1 1.9398 3.7790 3.7950 38 1 0.5173 4.8346 3.9916 39 1 2.5108 5.9483 2.3535 40 1 1.6741 6.1482 0.7952 41 1 -0.4191 6.7246 1.9931 42 1 0.4176 6.5246 3.5514 43 1 2.0044 8.3263 2.9296 44 1 1.1673 8.5257 1.3714 45 1 0.3848 10.1038 3.0103 46 1 -0.8404 9.0419 2.6393 47 1 2.9452 3.6186 1.6449 48 1 2.0227 3.9111 0.1616 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164479.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:39:52 Heat of formation + Delta-G solvation = -23.667220 kcal Electronic energy + Delta-G solvation = -22373.610337 eV Core-core repulsion = 19462.120647 eV Total energy + Delta-G solvation = -2911.489689 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.21737 -36.57946 -35.10407 -33.29668 -32.30798 -30.97396 -29.65498 -26.99720 -25.32076 -24.80300 -23.26224 -22.82553 -21.03752 -20.04464 -19.63708 -18.52795 -16.70275 -16.05679 -15.54446 -15.34699 -14.59167 -14.38725 -14.28657 -13.77792 -13.70405 -13.44034 -13.30329 -12.61695 -12.38272 -12.29723 -12.02513 -11.66804 -11.48899 -11.39685 -11.09455 -10.96549 -10.79265 -10.64752 -10.44493 -10.36722 -10.20340 -10.10171 -10.02731 -9.92800 -9.74948 -9.51073 -9.44157 -8.87518 -8.50538 -8.24134 -7.18381 -6.32445 -3.99098 3.42654 3.48158 3.63163 4.36581 4.52612 4.76588 4.97708 5.09083 5.19735 5.27175 5.38152 5.45017 5.49745 5.60588 5.65608 5.75757 5.81732 5.86841 5.99639 6.06886 6.13075 6.16379 6.22227 6.27735 6.29741 6.37103 6.41736 6.46616 6.53572 6.59912 6.67556 6.72979 6.80505 6.91283 6.94383 6.95257 6.99026 7.14045 7.23216 7.24255 7.42848 7.51623 7.98751 8.13830 8.46088 8.67233 8.92627 9.68847 11.04123 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.015315 B = 0.006145 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.830188 B = 4555.547288 C = 5886.043118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.112 4.112 3 C 0.205 3.795 4 H -0.014 1.014 5 C -0.578 4.578 6 H 0.056 0.944 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 1.064 2.936 10 H -0.291 1.291 11 H -0.285 1.285 12 H -0.288 1.288 13 N -0.511 5.511 14 C 0.048 3.952 15 C -0.105 4.105 16 C -0.105 4.105 17 C -0.110 4.110 18 C -0.075 4.075 19 H 0.073 0.927 20 C -0.113 4.113 21 C -0.117 4.117 22 C 0.059 3.941 23 N -0.854 5.854 24 C 0.062 3.938 25 H 0.057 0.943 26 H 0.017 0.983 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.023 0.977 30 H 0.269 0.731 31 H 0.061 0.939 32 H 0.023 0.977 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.041 0.959 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.025 0.975 45 H 0.338 0.662 46 H 0.340 0.660 47 H 0.013 0.987 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.432 8.760 10.561 14.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.150 4.150 3 C 0.099 3.901 4 H 0.004 0.996 5 C -0.616 4.616 6 H 0.074 0.926 7 C -0.183 4.183 8 N -0.548 5.548 9 Si 0.893 3.107 10 H -0.218 1.218 11 H -0.211 1.211 12 H -0.214 1.214 13 N -0.234 5.234 14 C -0.081 4.081 15 C -0.143 4.143 16 C -0.143 4.143 17 C -0.148 4.148 18 C -0.094 4.094 19 H 0.091 0.909 20 C -0.152 4.152 21 C -0.154 4.154 22 C -0.072 4.072 23 N -0.383 5.383 24 C -0.065 4.065 25 H 0.076 0.924 26 H 0.036 0.964 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.044 0.956 45 H 0.150 0.850 46 H 0.152 0.848 47 H 0.031 0.969 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.736 8.223 9.523 13.443 hybrid contribution 0.845 0.450 0.748 1.215 sum -3.891 8.672 10.271 13.994 Atomic orbital electron populations 1.21435 0.96283 0.97584 1.02445 1.21642 0.96492 0.98265 0.98637 1.19400 0.91903 0.90699 0.88124 0.99636 1.21776 1.29840 1.18984 0.91018 0.92569 1.25656 0.95248 0.95950 1.01427 1.70774 1.19097 1.32247 1.32672 0.83627 0.75604 0.75971 0.75535 1.21788 1.21099 1.21369 1.61507 1.59487 1.01066 1.01382 1.21953 0.95033 0.99302 0.91851 1.21915 0.97950 0.97411 0.97069 1.21126 0.98536 0.94146 1.00455 1.21460 0.99756 0.97200 0.96340 1.20162 1.00838 0.93128 0.95237 0.90887 1.21600 0.98262 0.94732 1.00623 1.21638 0.98963 0.92989 1.01841 1.21861 0.95802 0.93283 0.96258 1.58742 1.06010 1.10268 1.63315 1.20911 0.94408 0.89708 1.01511 0.92440 0.96436 0.92751 0.92172 0.95831 0.91996 0.92115 0.95920 0.93571 0.92568 0.93982 0.91512 0.92847 0.92344 0.92423 0.91974 0.92274 0.90947 0.91268 0.95636 0.85031 0.84840 0.96871 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 9.49 37.16 0.35 -2.21 16 2 C -0.11 -2.57 5.14 -26.73 -0.14 -2.71 16 3 C 0.21 4.96 1.28 -68.86 -0.09 4.87 16 4 H -0.01 -0.37 7.35 -51.93 -0.38 -0.75 16 5 C -0.58 -15.28 6.18 -34.44 -0.21 -15.50 16 6 H 0.06 1.52 7.14 -52.48 -0.37 1.15 16 7 C 0.02 0.59 5.14 -17.82 -0.09 0.50 16 8 N -0.91 -26.66 13.04 55.43 0.72 -25.93 16 9 Si 1.06 24.82 29.92 -169.99 -5.09 19.73 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.51 -10.50 3.16 -232.94 -0.74 -11.23 16 14 C 0.05 0.88 4.88 -4.67 -0.02 0.86 16 15 C -0.10 -1.62 6.15 -25.50 -0.16 -1.78 16 16 C -0.10 -1.54 5.42 -27.32 -0.15 -1.69 16 17 C -0.11 -1.57 4.89 -27.20 -0.13 -1.70 16 18 C -0.07 -1.17 1.95 -93.20 -0.18 -1.35 16 19 H 0.07 1.25 7.58 -51.93 -0.39 0.86 16 20 C -0.11 -1.52 4.62 -26.73 -0.12 -1.65 16 21 C -0.12 -1.36 5.23 -26.73 -0.14 -1.50 16 22 C 0.06 0.61 6.79 -3.82 -0.03 0.59 16 23 N -0.85 -8.02 9.62 -10.37 -0.10 -8.12 16 24 C 0.06 1.20 3.88 -6.70 -0.03 1.17 16 25 H 0.06 1.33 7.44 -51.93 -0.39 0.94 16 26 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 1.13 7.41 -51.93 -0.38 0.74 16 28 H 0.06 1.53 6.67 -51.93 -0.35 1.18 16 29 H 0.02 0.50 6.08 -51.93 -0.32 0.18 16 30 H 0.27 7.89 6.30 -40.82 -0.26 7.64 16 31 H 0.06 1.16 5.39 -51.93 -0.28 0.88 16 32 H 0.02 0.41 6.51 -51.93 -0.34 0.07 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 1.09 7.38 -51.93 -0.38 0.70 16 37 H 0.05 0.79 7.15 -51.93 -0.37 0.41 16 38 H 0.06 0.75 5.85 -51.93 -0.30 0.45 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.87 6.16 -51.93 -0.32 0.55 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.34 2.56 9.08 -39.29 -0.36 2.20 16 46 H 0.34 2.85 8.99 -39.29 -0.35 2.50 16 47 H 0.01 0.26 7.24 -51.93 -0.38 -0.12 16 48 H 0.09 1.90 5.97 -51.93 -0.31 1.59 16 LS Contribution 347.03 15.07 5.23 5.23 Total: -1.00 -27.96 347.03 -9.94 -37.90 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -8.83 Total: 4.52 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -1.13 Total: -22.10 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: -0.11 Total: -45.29 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.09 Total: 19.73 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.96 -9.94 -37.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164479.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.229 kcal (2) G-P(sol) polarization free energy of solvation -27.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds