Wall clock time and date at job start Mon Mar 30 2020 19:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46738 * 2 1 4 4 H 1.08998 * 109.46604 * 178.56947 * 3 2 1 5 5 C 1.50699 * 109.47229 * 298.56770 * 3 2 1 6 6 H 1.08003 * 119.99640 * 114.30577 * 5 3 2 7 7 C 1.37876 * 120.00147 * 294.31127 * 5 3 2 8 8 N 1.31515 * 120.00018 * 347.47409 * 7 5 3 9 9 Si 1.86794 * 120.00060 * 167.19365 * 7 5 3 10 10 H 1.48509 * 109.46831 * 89.99999 * 9 7 5 11 11 H 1.48499 * 109.47387 * 209.99922 * 9 7 5 12 12 H 1.48506 * 109.47444 * 330.00462 * 9 7 5 13 13 N 1.46895 * 109.47145 * 58.57072 * 3 2 1 14 14 C 1.44278 * 111.00043 * 60.01248 * 13 3 2 15 15 C 1.54071 * 111.98407 * 219.30895 * 14 13 3 16 16 C 1.54290 * 112.28767 * 318.91939 * 15 14 13 17 17 C 1.50468 * 113.03143 * 318.29897 * 16 15 14 18 18 C 1.54510 * 108.85006 * 92.15958 * 17 16 15 19 19 H 1.08994 * 109.00001 * 43.31224 * 18 17 16 20 20 C 1.53004 * 109.05559 * 162.26575 * 18 17 16 21 21 C 1.53005 * 109.46752 * 297.08376 * 20 18 17 22 22 C 1.52995 * 109.46971 * 180.02562 * 21 20 18 23 23 N 1.46904 * 109.47045 * 179.97438 * 22 21 20 24 24 C 1.45869 * 111.58866 * 282.80096 * 18 17 16 25 25 H 1.08994 * 109.47221 * 65.05920 * 1 2 3 26 26 H 1.09006 * 109.46481 * 185.05767 * 1 2 3 27 27 H 1.08997 * 109.47107 * 305.05105 * 1 2 3 28 28 H 1.09004 * 109.47463 * 240.00347 * 2 1 3 29 29 H 1.09000 * 109.47624 * 119.99879 * 2 1 3 30 30 H 0.97003 * 120.00005 * 1.45544 * 8 7 5 31 31 H 1.08996 * 108.97818 * 339.95647 * 14 13 3 32 32 H 1.08996 * 108.97396 * 98.66802 * 14 13 3 33 33 H 1.08996 * 108.91356 * 198.19160 * 15 14 13 34 34 H 1.08996 * 108.84125 * 79.58977 * 15 14 13 35 35 H 1.08996 * 108.77254 * 197.38810 * 16 15 14 36 36 H 1.08999 * 108.68033 * 79.14889 * 16 15 14 37 37 H 1.08997 * 109.57749 * 332.34636 * 17 16 15 38 38 H 1.09004 * 109.57282 * 211.96814 * 17 16 15 39 39 H 1.09005 * 109.47487 * 57.07692 * 20 18 17 40 40 H 1.08991 * 109.47038 * 177.08435 * 20 18 17 41 41 H 1.08998 * 109.47153 * 300.00144 * 21 20 18 42 42 H 1.09004 * 109.47143 * 59.99935 * 21 20 18 43 43 H 1.08997 * 109.47591 * 299.99597 * 22 21 20 44 44 H 1.09004 * 109.47273 * 59.99974 * 22 21 20 45 45 H 1.00900 * 111.00248 * 179.97438 * 23 22 21 46 46 H 1.00896 * 111.00092 * 303.95169 * 23 22 21 47 47 H 1.09000 * 108.79249 * 300.44350 * 24 18 17 48 48 H 1.08997 * 108.79138 * 182.21880 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1296 1.4427 0.0257 5 6 1.5668 2.1427 -1.2478 6 1 0.8702 2.9648 -1.1746 7 6 2.0230 1.7336 -2.4829 8 7 3.0449 0.9100 -2.5667 9 14 1.1848 2.3430 -4.0370 10 1 1.8342 3.5995 -4.4895 11 1 1.3043 1.3132 -5.1003 12 1 -0.2506 2.6009 -3.7567 13 7 1.5222 2.1449 1.1817 14 6 1.9567 1.5010 2.3975 15 6 0.8466 1.4763 3.4656 16 6 0.0619 2.8034 3.5248 17 6 0.9463 4.0157 3.4141 18 6 1.0460 4.4269 1.9281 19 1 0.0555 4.3698 1.4768 20 6 1.5518 5.8683 1.8415 21 6 0.5399 6.8046 2.5050 22 6 1.0453 8.2460 2.4179 23 7 0.0734 9.1450 3.0544 24 6 1.9562 3.5577 1.1906 25 1 -0.3633 0.4333 -0.9318 26 1 -0.3632 -1.0238 0.0906 27 1 -0.3633 0.5902 0.8413 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.4643 0.5737 -1.7593 31 1 2.2526 0.4769 2.1700 32 1 2.8185 2.0375 2.7943 33 1 1.2978 1.2887 4.4399 34 1 0.1544 0.6664 3.2353 35 1 -0.4791 2.8492 4.4699 36 1 -0.6590 2.8194 2.7074 37 1 1.9398 3.7790 3.7950 38 1 0.5173 4.8346 3.9916 39 1 2.5108 5.9483 2.3535 40 1 1.6741 6.1482 0.7952 41 1 -0.4191 6.7246 1.9931 42 1 0.4176 6.5246 3.5514 43 1 2.0044 8.3263 2.9296 44 1 1.1673 8.5257 1.3714 45 1 0.3848 10.1038 3.0103 46 1 -0.8404 9.0419 2.6393 47 1 2.9452 3.6186 1.6449 48 1 2.0227 3.9111 0.1616 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164479.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:39:52 Heat of formation + Delta-G solvation = -40.262623 kcal Electronic energy + Delta-G solvation = -22374.329967 eV Core-core repulsion = 19462.120647 eV Total energy + Delta-G solvation = -2912.209320 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.70634 -37.94535 -36.38737 -34.65155 -33.93494 -32.75145 -30.80515 -28.62793 -26.96418 -26.19749 -25.00912 -24.16704 -22.06233 -21.69757 -21.01838 -20.07138 -18.66473 -17.14778 -16.89516 -16.58488 -15.90288 -15.75954 -15.61934 -15.53100 -15.04143 -14.98688 -14.66573 -14.09278 -13.80270 -13.79224 -13.43678 -13.18274 -13.04840 -12.74553 -12.64956 -12.45341 -12.26055 -12.17139 -11.97931 -11.95441 -11.74539 -11.63425 -11.52954 -11.30927 -11.21390 -11.06616 -10.82688 -10.51849 -10.32524 -9.61695 -8.94374 -8.52956 -6.19858 1.52020 1.60372 1.77895 2.57501 3.16941 3.24596 3.67245 3.80594 3.97845 4.10216 4.17372 4.19343 4.26217 4.37896 4.42755 4.49069 4.53828 4.56321 4.61522 4.69481 4.73464 4.78979 4.80888 4.91514 4.95713 4.98381 5.09839 5.12794 5.22676 5.23306 5.26582 5.32142 5.35447 5.40438 5.47798 5.49751 5.58232 5.61059 5.69487 5.71819 6.04519 6.14539 6.22511 6.54063 6.60053 6.61328 6.87635 7.55426 8.82746 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.015315 B = 0.006145 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.830188 B = 4555.547288 C = 5886.043118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.106 4.106 3 C 0.209 3.791 4 H -0.054 1.054 5 C -0.572 4.572 6 H 0.047 0.953 7 C -0.026 4.026 8 N -0.938 5.938 9 Si 1.105 2.895 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.509 5.509 14 C 0.045 3.955 15 C -0.099 4.099 16 C -0.103 4.103 17 C -0.102 4.102 18 C -0.069 4.069 19 H 0.059 0.941 20 C -0.107 4.107 21 C -0.107 4.107 22 C 0.061 3.939 23 N -0.858 5.858 24 C 0.070 3.930 25 H 0.034 0.966 26 H 0.043 0.957 27 H 0.061 0.939 28 H 0.030 0.970 29 H 0.041 0.959 30 H 0.255 0.745 31 H 0.050 0.950 32 H 0.023 0.977 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.024 0.976 45 H 0.349 0.651 46 H 0.345 0.655 47 H 0.008 0.992 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.983 9.804 12.334 16.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.144 4.144 3 C 0.101 3.899 4 H -0.037 1.037 5 C -0.611 4.611 6 H 0.065 0.935 7 C -0.224 4.224 8 N -0.575 5.575 9 Si 0.929 3.071 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.232 5.232 14 C -0.084 4.084 15 C -0.138 4.138 16 C -0.141 4.141 17 C -0.140 4.140 18 C -0.088 4.088 19 H 0.078 0.922 20 C -0.146 4.146 21 C -0.144 4.144 22 C -0.069 4.069 23 N -0.389 5.389 24 C -0.058 4.058 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.042 0.958 45 H 0.162 0.838 46 H 0.158 0.842 47 H 0.026 0.974 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.297 9.288 11.324 15.942 hybrid contribution 1.376 0.134 0.256 1.406 sum -4.921 9.422 11.581 15.719 Atomic orbital electron populations 1.21307 0.94590 0.99172 1.01459 1.21517 0.97803 0.97067 0.98042 1.19247 0.89515 0.91908 0.89207 1.03688 1.21948 1.28716 1.18357 0.92058 0.93463 1.26903 0.95133 0.95727 1.04664 1.70892 1.20635 1.34105 1.31911 0.83078 0.75636 0.75900 0.72490 1.20510 1.21214 1.19706 1.61584 1.58968 1.01543 1.01135 1.22060 0.96512 0.98287 0.91528 1.21879 0.96963 0.98069 0.96840 1.21124 0.98173 0.93641 1.01173 1.21408 0.99832 0.97881 0.94833 1.20065 0.98998 0.93672 0.96105 0.92235 1.21518 0.99080 0.93683 1.00290 1.21521 0.98132 0.93283 1.01506 1.21768 0.96082 0.92728 0.96362 1.58715 1.06143 1.10902 1.63144 1.20906 0.95318 0.89558 0.99996 0.94660 0.93834 0.92048 0.95091 0.94071 0.93456 0.93179 0.95901 0.91108 0.92595 0.91317 0.93283 0.93003 0.90133 0.91967 0.93195 0.92427 0.90651 0.91182 0.95776 0.83804 0.84183 0.97407 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.54 9.49 71.98 0.68 -3.86 16 2 C -0.11 -4.95 5.14 30.60 0.16 -4.79 16 3 C 0.21 10.45 1.28 44.17 0.06 10.50 16 4 H -0.05 -3.10 7.35 -2.39 -0.02 -3.12 16 5 C -0.57 -31.22 6.18 25.60 0.16 -31.06 16 6 H 0.05 2.62 7.14 -2.91 -0.02 2.60 16 7 C -0.03 -1.45 5.14 84.65 0.44 -1.02 16 8 N -0.94 -56.76 13.04 21.45 0.28 -56.48 16 9 Si 1.11 50.53 29.92 68.60 2.05 52.59 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 13 N -0.51 -21.15 3.16 -890.87 -2.82 -23.96 16 14 C 0.05 1.62 4.88 87.16 0.43 2.04 16 15 C -0.10 -2.81 6.15 31.39 0.19 -2.62 16 16 C -0.10 -2.74 5.42 30.21 0.16 -2.57 16 17 C -0.10 -2.65 4.89 30.29 0.15 -2.50 16 18 C -0.07 -2.13 1.95 -12.47 -0.02 -2.16 16 19 H 0.06 2.01 7.58 -2.39 -0.02 1.99 16 20 C -0.11 -2.78 4.62 30.60 0.14 -2.64 16 21 C -0.11 -2.28 5.23 30.59 0.16 -2.12 16 22 C 0.06 1.17 6.79 86.30 0.59 1.75 16 23 N -0.86 -14.16 9.62 -186.72 -1.80 -15.96 16 24 C 0.07 2.74 3.88 83.94 0.33 3.07 16 25 H 0.03 1.61 7.44 -2.39 -0.02 1.59 16 26 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.06 2.47 7.41 -2.39 -0.02 2.45 16 28 H 0.03 1.61 6.67 -2.38 -0.02 1.59 16 29 H 0.04 1.75 6.08 -2.39 -0.01 1.74 16 30 H 0.26 15.77 6.30 -92.71 -0.58 15.19 16 31 H 0.05 1.89 5.39 -2.39 -0.01 1.88 16 32 H 0.02 0.81 6.51 -2.39 -0.02 0.80 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.05 1.49 7.38 -2.39 -0.02 1.47 16 37 H 0.05 1.39 7.15 -2.39 -0.02 1.37 16 38 H 0.08 1.78 5.85 -2.39 -0.01 1.76 16 39 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.05 1.41 8.09 -2.39 -0.02 1.39 16 41 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.07 1.59 6.16 -2.38 -0.01 1.57 16 43 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.02 0.46 8.14 -2.38 -0.02 0.45 16 45 H 0.35 4.52 9.08 -89.69 -0.81 3.70 16 46 H 0.35 5.04 8.99 -89.70 -0.81 4.23 16 47 H 0.01 0.31 7.24 -2.39 -0.02 0.29 16 48 H 0.05 2.37 5.97 -2.39 -0.01 2.35 16 Total: -1.00 -61.70 347.03 0.82 -60.88 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -0.50 Total: 20.90 kcal Atomic # 6 Polarization: -41.57 SS G_CDS: 3.61 Total: -37.96 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -4.33 Total: -96.40 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.05 Total: 52.59 kcal Total: -61.70 0.82 -60.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164479.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.613 kcal (2) G-P(sol) polarization free energy of solvation -61.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds