Wall clock time and date at job start Mon Mar 30 2020 19:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47421 * 2 1 4 4 H 1.08997 * 109.47365 * 304.56073 * 3 2 1 5 5 C 1.50696 * 109.47181 * 184.55186 * 3 2 1 6 6 H 1.07999 * 119.99739 * 242.75459 * 5 3 2 7 7 C 1.37880 * 119.99900 * 62.75868 * 5 3 2 8 8 N 1.31509 * 119.99650 * 195.77505 * 7 5 3 9 9 Si 1.86792 * 120.00001 * 15.77214 * 7 5 3 10 10 H 1.48502 * 109.47252 * 90.94387 * 9 7 5 11 11 H 1.48501 * 109.47545 * 210.94280 * 9 7 5 12 12 H 1.48499 * 109.47307 * 330.94386 * 9 7 5 13 13 N 1.46901 * 109.46743 * 64.55338 * 3 2 1 14 14 C 1.46904 * 111.00233 * 204.05643 * 13 3 2 15 15 C 1.52993 * 109.47416 * 205.78492 * 14 13 3 16 16 C 1.52998 * 109.47583 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47101 * 59.99505 * 16 15 14 18 18 C 1.52994 * 109.47237 * 180.02562 * 17 16 15 19 19 N 1.46911 * 109.47134 * 185.00049 * 18 17 16 20 20 C 1.46898 * 110.99714 * 66.04703 * 19 18 17 21 21 C 1.46894 * 110.99881 * 190.00034 * 19 18 17 22 22 C 1.53003 * 109.47265 * 300.00645 * 17 16 15 23 23 C 1.52993 * 109.47198 * 85.77944 * 14 13 3 24 24 H 1.09005 * 109.47138 * 304.37589 * 1 2 3 25 25 H 1.09003 * 109.47452 * 64.37093 * 1 2 3 26 26 H 1.08996 * 109.47347 * 184.37859 * 1 2 3 27 27 H 1.09005 * 109.46304 * 240.00632 * 2 1 3 28 28 H 1.08999 * 109.47225 * 120.00619 * 2 1 3 29 29 H 0.97000 * 119.99703 * 179.97438 * 8 7 5 30 30 H 1.00901 * 111.00316 * 80.10392 * 13 3 2 31 31 H 1.09006 * 109.46542 * 325.77878 * 14 13 3 32 32 H 1.09005 * 109.47592 * 59.99112 * 15 14 13 33 33 H 1.08998 * 109.46998 * 299.99864 * 15 14 13 34 34 H 1.08995 * 109.47462 * 179.97438 * 16 15 14 35 35 H 1.08998 * 109.47089 * 300.00109 * 16 15 14 36 36 H 1.09007 * 109.46818 * 60.00164 * 17 16 15 37 37 H 1.08996 * 109.47477 * 305.00134 * 18 17 16 38 38 H 1.09000 * 109.47195 * 65.00368 * 18 17 16 39 39 H 1.09003 * 109.47506 * 60.00158 * 20 19 18 40 40 H 1.08998 * 109.47079 * 180.02562 * 20 19 18 41 41 H 1.09007 * 109.47240 * 300.00011 * 20 19 18 42 42 H 1.09000 * 109.47210 * 60.00061 * 21 19 18 43 43 H 1.09000 * 109.47501 * 180.02562 * 21 19 18 44 44 H 1.09007 * 109.47476 * 299.99784 * 21 19 18 45 45 H 1.09007 * 109.46809 * 299.99524 * 22 17 16 46 46 H 1.08995 * 109.47150 * 179.97438 * 22 17 16 47 47 H 1.09005 * 109.47408 * 299.99852 * 23 14 13 48 48 H 1.08997 * 109.47266 * 60.00653 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6116 1.9794 -0.8463 5 6 3.5428 1.4439 -0.1128 6 1 4.1439 1.8504 0.6871 7 6 4.1503 0.9262 -1.2371 8 7 5.4335 0.6392 -1.2179 9 14 3.1505 0.6326 -2.7874 10 1 3.2009 1.8434 -3.6457 11 1 3.7150 -0.5236 -3.5290 12 1 1.7408 0.3445 -2.4202 13 7 1.6422 2.1024 1.2507 14 6 1.5864 3.5606 1.0818 15 6 1.8119 4.2397 2.4342 16 6 1.7544 5.7584 2.2583 17 6 0.3827 6.1567 1.7099 18 6 0.3254 7.6754 1.5334 19 7 -1.0285 8.0698 1.1214 20 6 -2.0018 7.8051 2.1894 21 6 -1.0647 9.4806 0.7139 22 6 0.1572 5.4777 0.3575 23 6 0.2145 3.9585 0.5338 24 1 -0.3634 0.5803 0.8482 25 1 -0.3634 0.4445 -0.9266 26 1 -0.3634 -1.0246 0.0785 27 1 1.8932 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 5.8608 0.2747 -2.0088 30 1 2.2616 1.8494 2.0060 31 1 2.3619 3.8754 0.3835 32 1 2.7893 3.9562 2.8247 33 1 1.0365 3.9249 3.1325 34 1 1.9146 6.2421 3.2218 35 1 2.5300 6.0729 1.5600 36 1 -0.3930 5.8422 2.4082 37 1 0.5737 8.1606 2.4773 38 1 1.0407 7.9796 0.7693 39 1 -1.7281 8.3722 3.0791 40 1 -2.9956 8.1058 1.8579 41 1 -2.0038 6.7404 2.4234 42 1 -0.3856 9.6341 -0.1247 43 1 -2.0785 9.7464 0.4142 44 1 -0.7571 10.1084 1.5502 45 1 0.9329 5.7922 -0.3408 46 1 -0.8202 5.7611 -0.0329 47 1 0.0539 3.4748 -0.4298 48 1 -0.5609 3.6437 1.2321 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164857.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:40:13 Heat of formation + Delta-G solvation = -20.383284 kcal Electronic energy + Delta-G solvation = -21875.280828 eV Core-core repulsion = 18963.933541 eV Total energy + Delta-G solvation = -2911.347287 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.11618 -37.22531 -35.44914 -32.44875 -31.70188 -30.38860 -29.26992 -27.75515 -26.82124 -25.07515 -22.59973 -22.53194 -21.77628 -20.18379 -19.46703 -19.25586 -16.90263 -15.67442 -15.39562 -15.36089 -14.94518 -14.60741 -14.11183 -13.73053 -13.53110 -13.35266 -13.06855 -12.66839 -12.55122 -12.39714 -12.19903 -11.86942 -11.82222 -11.74576 -11.65235 -11.41853 -11.29552 -10.87252 -10.72122 -10.68748 -10.62451 -10.25450 -10.17953 -9.85528 -9.65585 -9.54655 -9.43484 -9.08297 -8.46090 -8.41636 -7.23368 -6.11712 -4.06658 3.29661 3.39239 3.43673 3.82538 4.43231 4.73360 4.95804 4.98153 5.09749 5.14361 5.19571 5.23677 5.32670 5.38439 5.51476 5.58726 5.66807 5.68898 5.72980 5.81058 5.88366 5.91870 5.96626 6.00714 6.14469 6.21048 6.24607 6.32471 6.38858 6.50108 6.52555 6.59002 6.70007 6.77962 6.82319 6.87443 6.89546 6.92936 6.97015 7.15419 7.29313 7.44186 7.67338 8.17308 8.47067 8.59022 8.95922 9.56511 11.01475 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.024189 B = 0.004429 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.259241 B = 6320.387628 C = 6443.462397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C 0.189 3.811 4 H 0.027 0.973 5 C -0.549 4.549 6 H 0.069 0.931 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.861 3.139 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.247 1.247 13 N -0.679 5.679 14 C 0.091 3.909 15 C -0.115 4.115 16 C -0.110 4.110 17 C -0.081 4.081 18 C 0.058 3.942 19 N -0.544 5.544 20 C 0.022 3.978 21 C 0.025 3.975 22 C -0.104 4.104 23 C -0.104 4.104 24 H 0.061 0.939 25 H 0.035 0.965 26 H 0.029 0.971 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.262 0.738 30 H 0.332 0.668 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.030 0.970 38 H 0.073 0.927 39 H 0.022 0.978 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.021 0.979 45 H 0.055 0.945 46 H 0.067 0.933 47 H 0.056 0.944 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.705 13.345 5.984 19.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C 0.079 3.921 4 H 0.045 0.955 5 C -0.588 4.588 6 H 0.087 0.913 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.688 3.312 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.171 1.171 13 N -0.309 5.309 14 C -0.019 4.019 15 C -0.153 4.153 16 C -0.149 4.149 17 C -0.100 4.100 18 C -0.069 4.069 19 N -0.268 5.268 20 C -0.127 4.127 21 C -0.124 4.124 22 C -0.142 4.142 23 C -0.142 4.142 24 H 0.080 0.920 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.149 0.851 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.092 0.908 39 H 0.040 0.960 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.040 0.960 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.075 0.925 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.360 12.891 5.357 19.323 hybrid contribution 0.989 0.535 -0.314 1.168 sum -12.371 13.426 5.043 18.940 Atomic orbital electron populations 1.21738 0.98019 0.99160 1.01058 1.21839 0.93345 0.99187 1.00544 1.19466 0.93751 0.90644 0.88213 0.95516 1.21714 0.90697 1.41378 1.04980 0.91280 1.24944 0.94659 0.94041 0.98846 1.70006 1.11137 1.42584 1.29258 0.87260 0.82376 0.77827 0.83736 1.20811 1.21486 1.17072 1.60797 1.56087 1.05589 1.08378 1.21350 0.96229 0.89025 0.95283 1.21653 1.01379 0.94252 0.98053 1.21516 0.96744 0.96397 1.00221 1.21182 0.97496 0.93003 0.98285 1.22254 0.89466 0.96383 0.98829 1.61949 1.06507 1.19574 1.38734 1.22436 0.95867 1.02084 0.92275 1.22371 1.02319 0.87880 0.99800 1.21481 1.01854 0.95012 0.95824 1.21531 0.97561 0.94215 1.00884 0.91975 0.94549 0.95138 0.93120 0.93056 0.92792 0.85072 0.93305 0.92268 0.91971 0.92704 0.91950 0.91290 0.95170 0.90808 0.95974 0.91703 0.90799 0.91391 0.91573 0.96003 0.92620 0.91382 0.92477 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.85 37.16 0.37 -2.32 16 2 C -0.11 -2.45 4.87 -26.73 -0.13 -2.58 16 3 C 0.19 4.38 1.35 -68.87 -0.09 4.29 16 4 H 0.03 0.66 5.97 -51.93 -0.31 0.35 16 5 C -0.55 -15.11 8.68 -34.44 -0.30 -15.41 16 6 H 0.07 2.07 7.98 -52.49 -0.42 1.65 16 7 C 0.08 2.23 5.32 -17.82 -0.09 2.14 16 8 N -0.89 -27.16 13.96 55.43 0.77 -26.38 16 9 Si 0.86 21.32 25.78 -169.99 -4.38 16.94 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.25 -5.77 5.40 56.52 0.31 -5.47 16 13 N -0.68 -13.55 5.41 -100.96 -0.55 -14.10 16 14 C 0.09 1.63 2.30 -67.72 -0.16 1.48 16 15 C -0.12 -1.72 5.18 -26.74 -0.14 -1.86 16 16 C -0.11 -1.40 5.20 -26.73 -0.14 -1.54 16 17 C -0.08 -0.97 2.11 -90.62 -0.19 -1.16 16 18 C 0.06 0.63 4.35 -3.82 -0.02 0.62 16 19 N -0.54 -5.71 4.47 -251.26 -1.12 -6.83 16 20 C 0.02 0.20 9.33 60.06 0.56 0.76 16 21 C 0.02 0.21 9.57 60.06 0.57 0.79 16 22 C -0.10 -1.43 5.09 -26.70 -0.14 -1.57 16 23 C -0.10 -1.67 5.42 -26.71 -0.14 -1.81 16 24 H 0.06 1.13 7.62 -51.93 -0.40 0.74 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 1.18 4.69 -51.93 -0.24 0.94 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.33 6.74 8.03 -39.29 -0.32 6.42 16 31 H 0.05 1.02 7.59 -51.93 -0.39 0.63 16 32 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.83 6.34 -51.92 -0.33 0.50 16 37 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 38 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 39 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 41 H 0.07 0.71 6.37 -51.93 -0.33 0.38 16 42 H 0.07 0.58 8.12 -51.93 -0.42 0.15 16 43 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 44 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 45 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 46 H 0.07 0.93 7.75 -51.93 -0.40 0.53 16 47 H 0.06 1.01 7.47 -51.93 -0.39 0.62 16 48 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 356.08 15.07 5.37 5.37 Total: -1.00 -28.92 356.08 -9.46 -38.38 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -9.51 Total: 4.81 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -0.04 Total: -18.18 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.90 Total: -47.31 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.38 Total: 16.94 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.92 -9.46 -38.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164857.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.000 kcal (2) G-P(sol) polarization free energy of solvation -28.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds