Wall clock time and date at job start Mon Mar 30 2020 19:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47421 * 2 1 4 4 H 1.08997 * 109.47365 * 304.56073 * 3 2 1 5 5 C 1.50696 * 109.47181 * 184.55186 * 3 2 1 6 6 H 1.07999 * 119.99739 * 242.75459 * 5 3 2 7 7 C 1.37880 * 119.99900 * 62.75868 * 5 3 2 8 8 N 1.31509 * 119.99650 * 195.77505 * 7 5 3 9 9 Si 1.86792 * 120.00001 * 15.77214 * 7 5 3 10 10 H 1.48502 * 109.47252 * 90.94387 * 9 7 5 11 11 H 1.48501 * 109.47545 * 210.94280 * 9 7 5 12 12 H 1.48499 * 109.47307 * 330.94386 * 9 7 5 13 13 N 1.46901 * 109.46743 * 64.55338 * 3 2 1 14 14 C 1.46904 * 111.00233 * 204.05643 * 13 3 2 15 15 C 1.52993 * 109.47416 * 205.78492 * 14 13 3 16 16 C 1.52998 * 109.47583 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47101 * 59.99505 * 16 15 14 18 18 C 1.52994 * 109.47237 * 180.02562 * 17 16 15 19 19 N 1.46911 * 109.47134 * 185.00049 * 18 17 16 20 20 C 1.46898 * 110.99714 * 66.04703 * 19 18 17 21 21 C 1.46894 * 110.99881 * 190.00034 * 19 18 17 22 22 C 1.53003 * 109.47265 * 300.00645 * 17 16 15 23 23 C 1.52993 * 109.47198 * 85.77944 * 14 13 3 24 24 H 1.09005 * 109.47138 * 304.37589 * 1 2 3 25 25 H 1.09003 * 109.47452 * 64.37093 * 1 2 3 26 26 H 1.08996 * 109.47347 * 184.37859 * 1 2 3 27 27 H 1.09005 * 109.46304 * 240.00632 * 2 1 3 28 28 H 1.08999 * 109.47225 * 120.00619 * 2 1 3 29 29 H 0.97000 * 119.99703 * 179.97438 * 8 7 5 30 30 H 1.00901 * 111.00316 * 80.10392 * 13 3 2 31 31 H 1.09006 * 109.46542 * 325.77878 * 14 13 3 32 32 H 1.09005 * 109.47592 * 59.99112 * 15 14 13 33 33 H 1.08998 * 109.46998 * 299.99864 * 15 14 13 34 34 H 1.08995 * 109.47462 * 179.97438 * 16 15 14 35 35 H 1.08998 * 109.47089 * 300.00109 * 16 15 14 36 36 H 1.09007 * 109.46818 * 60.00164 * 17 16 15 37 37 H 1.08996 * 109.47477 * 305.00134 * 18 17 16 38 38 H 1.09000 * 109.47195 * 65.00368 * 18 17 16 39 39 H 1.09003 * 109.47506 * 60.00158 * 20 19 18 40 40 H 1.08998 * 109.47079 * 180.02562 * 20 19 18 41 41 H 1.09007 * 109.47240 * 300.00011 * 20 19 18 42 42 H 1.09000 * 109.47210 * 60.00061 * 21 19 18 43 43 H 1.09000 * 109.47501 * 180.02562 * 21 19 18 44 44 H 1.09007 * 109.47476 * 299.99784 * 21 19 18 45 45 H 1.09007 * 109.46809 * 299.99524 * 22 17 16 46 46 H 1.08995 * 109.47150 * 179.97438 * 22 17 16 47 47 H 1.09005 * 109.47408 * 299.99852 * 23 14 13 48 48 H 1.08997 * 109.47266 * 60.00653 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6116 1.9794 -0.8463 5 6 3.5428 1.4439 -0.1128 6 1 4.1439 1.8504 0.6871 7 6 4.1503 0.9262 -1.2371 8 7 5.4335 0.6392 -1.2179 9 14 3.1505 0.6326 -2.7874 10 1 3.2009 1.8434 -3.6457 11 1 3.7150 -0.5236 -3.5290 12 1 1.7408 0.3445 -2.4202 13 7 1.6422 2.1024 1.2507 14 6 1.5864 3.5606 1.0818 15 6 1.8119 4.2397 2.4342 16 6 1.7544 5.7584 2.2583 17 6 0.3827 6.1567 1.7099 18 6 0.3254 7.6754 1.5334 19 7 -1.0285 8.0698 1.1214 20 6 -2.0018 7.8051 2.1894 21 6 -1.0647 9.4806 0.7139 22 6 0.1572 5.4777 0.3575 23 6 0.2145 3.9585 0.5338 24 1 -0.3634 0.5803 0.8482 25 1 -0.3634 0.4445 -0.9266 26 1 -0.3634 -1.0246 0.0785 27 1 1.8932 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 5.8608 0.2747 -2.0088 30 1 2.2616 1.8494 2.0060 31 1 2.3619 3.8754 0.3835 32 1 2.7893 3.9562 2.8247 33 1 1.0365 3.9249 3.1325 34 1 1.9146 6.2421 3.2218 35 1 2.5300 6.0729 1.5600 36 1 -0.3930 5.8422 2.4082 37 1 0.5737 8.1606 2.4773 38 1 1.0407 7.9796 0.7693 39 1 -1.7281 8.3722 3.0791 40 1 -2.9956 8.1058 1.8579 41 1 -2.0038 6.7404 2.4234 42 1 -0.3856 9.6341 -0.1247 43 1 -2.0785 9.7464 0.4142 44 1 -0.7571 10.1084 1.5502 45 1 0.9329 5.7922 -0.3408 46 1 -0.8202 5.7611 -0.0329 47 1 0.0539 3.4748 -0.4298 48 1 -0.5609 3.6437 1.2321 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164857.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:40:12 Heat of formation + Delta-G solvation = -38.793419 kcal Electronic energy + Delta-G solvation = -21876.079151 eV Core-core repulsion = 18963.933541 eV Total energy + Delta-G solvation = -2912.145610 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.26802 -38.41899 -36.89701 -34.32201 -33.36185 -31.59263 -30.63235 -28.54468 -28.42013 -26.30430 -24.29296 -23.73218 -22.88937 -21.37753 -21.17858 -20.47256 -19.02414 -16.95606 -16.65655 -16.38740 -16.14595 -15.91051 -15.46093 -15.15535 -14.89411 -14.74240 -14.48841 -14.29959 -13.90456 -13.56297 -13.26763 -13.15902 -13.11340 -12.97706 -12.75947 -12.59756 -12.57712 -12.48020 -12.30409 -12.14093 -11.90718 -11.77006 -11.50938 -11.37164 -11.29746 -11.19035 -10.87005 -10.76399 -10.59192 -9.21040 -8.99251 -8.34602 -6.33263 1.30848 1.35372 1.45668 2.32910 3.01220 3.07380 3.51685 3.85844 3.95935 4.00131 4.28356 4.33521 4.45873 4.48215 4.50242 4.58493 4.59073 4.63147 4.63638 4.70956 4.74943 4.76475 4.77954 4.84934 4.89727 4.99466 5.01646 5.04162 5.10494 5.18226 5.21770 5.27994 5.31555 5.35601 5.42518 5.45403 5.54972 5.55441 5.58849 5.70153 5.75904 6.14580 6.15645 6.18240 6.48404 6.70557 6.87868 7.34133 8.82022 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.024189 B = 0.004429 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.259241 B = 6320.387628 C = 6443.462397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.112 4.112 3 C 0.196 3.804 4 H 0.020 0.980 5 C -0.549 4.549 6 H 0.029 0.971 7 C 0.023 3.977 8 N -0.941 5.941 9 Si 0.921 3.079 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.222 1.222 13 N -0.668 5.668 14 C 0.090 3.910 15 C -0.109 4.109 16 C -0.106 4.106 17 C -0.073 4.073 18 C 0.064 3.936 19 N -0.560 5.560 20 C 0.022 3.978 21 C 0.025 3.975 22 C -0.095 4.095 23 C -0.095 4.095 24 H 0.067 0.933 25 H 0.038 0.962 26 H 0.053 0.947 27 H 0.038 0.962 28 H 0.045 0.955 29 H 0.264 0.736 30 H 0.329 0.671 31 H 0.010 0.990 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.039 0.961 38 H 0.068 0.932 39 H 0.027 0.973 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.027 0.973 45 H 0.041 0.959 46 H 0.074 0.926 47 H 0.038 0.962 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.484 14.165 6.349 21.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.150 4.150 3 C 0.086 3.914 4 H 0.038 0.962 5 C -0.588 4.588 6 H 0.047 0.953 7 C -0.176 4.176 8 N -0.580 5.580 9 Si 0.745 3.255 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.145 1.145 13 N -0.296 5.296 14 C -0.020 4.020 15 C -0.147 4.147 16 C -0.144 4.144 17 C -0.091 4.091 18 C -0.064 4.064 19 N -0.284 5.284 20 C -0.126 4.126 21 C -0.123 4.123 22 C -0.133 4.133 23 C -0.134 4.134 24 H 0.086 0.914 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.145 0.855 31 H 0.028 0.972 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.046 0.954 45 H 0.060 0.940 46 H 0.093 0.907 47 H 0.057 0.943 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.166 13.726 5.736 21.969 hybrid contribution 1.914 0.319 -0.348 1.971 sum -14.253 14.045 5.388 20.722 Atomic orbital electron populations 1.21630 0.94940 1.00899 1.01486 1.21770 0.96040 0.97535 0.99695 1.19321 0.90638 0.91987 0.89423 0.96191 1.22030 0.92989 1.40085 1.03681 0.95261 1.25767 0.95622 0.94106 1.02096 1.70135 1.13134 1.44495 1.30278 0.86288 0.82095 0.77644 0.79434 1.20724 1.21204 1.14515 1.60856 1.55098 1.06873 1.06778 1.21438 0.96321 0.87861 0.96410 1.21590 1.01194 0.95653 0.96238 1.21482 0.97034 0.94697 1.01201 1.21093 0.97029 0.93912 0.97085 1.22133 0.89930 0.95223 0.99132 1.61942 1.06308 1.20738 1.39386 1.22457 0.96031 1.01952 0.92196 1.22396 1.02973 0.87023 0.99942 1.21393 1.01687 0.93419 0.96826 1.21451 0.96275 0.95714 0.99920 0.91374 0.94253 0.92793 0.94386 0.93616 0.92702 0.85484 0.97213 0.93443 0.90507 0.90468 0.93167 0.90373 0.94259 0.91398 0.95399 0.90752 0.91168 0.91564 0.90585 0.95410 0.94044 0.90695 0.94316 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 9.85 71.98 0.71 -3.90 16 2 C -0.11 -4.82 4.87 30.59 0.15 -4.67 16 3 C 0.20 9.14 1.35 44.17 0.06 9.20 16 4 H 0.02 0.97 5.97 -2.39 -0.01 0.96 16 5 C -0.55 -31.23 8.68 25.60 0.22 -31.00 16 6 H 0.03 1.85 7.98 -2.91 -0.02 1.82 16 7 C 0.02 1.33 5.32 84.66 0.45 1.78 16 8 N -0.94 -59.15 13.96 21.45 0.30 -58.85 16 9 Si 0.92 44.33 25.78 68.60 1.77 46.10 16 10 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 12 H -0.22 -9.76 5.40 99.48 0.54 -9.22 16 13 N -0.67 -26.64 5.41 -473.33 -2.56 -29.20 16 14 C 0.09 3.22 2.30 44.91 0.10 3.32 16 15 C -0.11 -3.16 5.18 30.59 0.16 -3.00 16 16 C -0.11 -2.54 5.20 30.59 0.16 -2.38 16 17 C -0.07 -1.60 2.11 -10.79 -0.02 -1.62 16 18 C 0.06 1.24 4.35 86.30 0.38 1.62 16 19 N -0.56 -10.41 4.47 -948.83 -4.24 -14.65 16 20 C 0.02 0.34 9.33 127.69 1.19 1.53 16 21 C 0.02 0.37 9.57 127.69 1.22 1.60 16 22 C -0.10 -2.52 5.09 30.61 0.16 -2.36 16 23 C -0.10 -2.97 5.42 30.61 0.17 -2.80 16 24 H 0.07 2.29 7.62 -2.38 -0.02 2.27 16 25 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.04 1.71 4.69 -2.38 -0.01 1.70 16 28 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 30 H 0.33 13.53 8.03 -89.69 -0.72 12.81 16 31 H 0.01 0.43 7.59 -2.38 -0.02 0.41 16 32 H 0.05 1.48 8.12 -2.38 -0.02 1.46 16 33 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.63 6.34 -2.38 -0.02 1.62 16 37 H 0.04 0.71 8.12 -2.39 -0.02 0.69 16 38 H 0.07 1.40 8.06 -2.39 -0.02 1.38 16 39 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.07 1.01 8.12 -2.39 -0.02 0.99 16 41 H 0.07 1.14 6.37 -2.38 -0.02 1.12 16 42 H 0.07 1.01 8.12 -2.39 -0.02 0.99 16 43 H 0.08 0.99 8.12 -2.39 -0.02 0.97 16 44 H 0.03 0.39 8.14 -2.38 -0.02 0.37 16 45 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 46 H 0.07 1.90 7.75 -2.39 -0.02 1.89 16 47 H 0.04 1.33 7.47 -2.38 -0.02 1.32 16 48 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -63.53 356.08 0.36 -63.17 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.00 Total: 26.11 kcal Atomic # 6 Polarization: -37.78 SS G_CDS: 5.10 Total: -32.68 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -6.51 Total: -102.70 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.77 Total: 46.10 kcal Total: -63.53 0.36 -63.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164857.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.376 kcal (2) G-P(sol) polarization free energy of solvation -63.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds