Wall clock time and date at job start Mon Mar 30 2020 19:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47077 * 2 1 4 4 C 1.53006 * 109.46707 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46594 * 180.02562 * 4 3 2 6 6 N 1.46906 * 109.46501 * 180.02562 * 5 4 3 7 7 C 1.46960 * 110.99571 * 189.99540 * 6 5 4 8 8 C 1.53046 * 109.36446 * 183.18469 * 7 6 5 9 9 N 1.46955 * 109.36604 * 301.60343 * 8 7 6 10 10 C 1.46906 * 110.99856 * 183.18610 * 9 8 7 11 11 H 1.08992 * 109.47459 * 54.99712 * 10 9 8 12 12 C 1.50703 * 109.47109 * 294.99794 * 10 9 8 13 13 H 1.08005 * 119.99876 * 0.02562 * 12 10 9 14 14 C 1.37875 * 119.99989 * 180.02562 * 12 10 9 15 15 N 1.31518 * 119.99944 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47418 * 89.99710 * 16 14 12 18 18 H 1.48498 * 109.47091 * 209.99770 * 16 14 12 19 19 H 1.48498 * 109.46997 * 329.99580 * 16 14 12 20 20 C 1.52997 * 109.46907 * 174.99980 * 10 9 8 21 21 C 1.52997 * 109.47181 * 295.00116 * 20 10 9 22 22 C 1.46961 * 110.88018 * 59.32006 * 9 8 7 23 23 C 1.46950 * 111.00159 * 313.79290 * 6 5 4 24 24 H 1.08998 * 109.46923 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46784 * 299.99567 * 1 2 3 26 26 H 1.08999 * 109.47233 * 59.99444 * 1 2 3 27 27 H 1.09001 * 109.46784 * 240.00433 * 2 1 3 28 28 H 1.08996 * 109.46737 * 120.00564 * 2 1 3 29 29 H 1.09001 * 109.46960 * 60.00540 * 3 2 1 30 30 H 1.08996 * 109.47091 * 300.00160 * 3 2 1 31 31 H 1.08994 * 109.47151 * 60.00172 * 4 3 2 32 32 H 1.09001 * 109.46768 * 299.99698 * 4 3 2 33 33 H 1.08994 * 109.47598 * 59.99996 * 5 4 3 34 34 H 1.09004 * 109.46694 * 299.99589 * 5 4 3 35 35 H 1.09004 * 109.48411 * 63.22199 * 7 6 5 36 36 H 1.09002 * 109.49087 * 303.15887 * 7 6 5 37 37 H 1.08995 * 109.49261 * 181.62868 * 8 7 6 38 38 H 1.09005 * 109.50549 * 61.58089 * 8 7 6 39 39 H 0.96997 * 119.99752 * 180.02562 * 15 14 12 40 40 H 1.09004 * 109.47610 * 54.99955 * 20 10 9 41 41 H 1.09001 * 109.47532 * 174.99774 * 20 10 9 42 42 H 1.09007 * 109.46964 * 299.99672 * 21 20 10 43 43 H 1.09000 * 109.47346 * 60.00199 * 21 20 10 44 44 H 1.09004 * 109.47224 * 180.02562 * 21 20 10 45 45 H 1.08995 * 109.48906 * 60.64814 * 22 9 8 46 46 H 1.09005 * 109.48186 * 180.71376 * 22 9 8 47 47 H 1.09003 * 109.49301 * 296.78250 * 23 6 5 48 48 H 1.09005 * 109.48642 * 56.84880 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 7 5.5491 2.8848 -0.0012 7 6 6.0760 4.2358 0.2375 8 6 7.6037 4.2075 0.1497 9 7 8.1311 3.2573 1.1389 10 6 9.6002 3.2572 1.1376 11 1 9.9637 4.2726 1.2952 12 6 10.1014 2.7443 -0.1878 13 1 9.3989 2.4483 -0.9529 14 6 11.4567 2.6528 -0.4237 15 7 12.3121 3.0137 0.5078 16 14 12.0780 2.0177 -2.0669 17 1 12.2429 3.1553 -3.0070 18 1 13.3860 1.3416 -1.8737 19 1 11.0991 1.0512 -2.6261 20 6 10.1110 2.3526 2.2608 21 6 9.7074 2.9418 3.6138 22 6 7.6042 1.9063 0.9001 23 6 6.0766 1.9346 0.9879 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6768 1.9563 0.8901 30 1 1.6767 1.9563 -0.8899 31 1 3.9330 0.9287 -0.8908 32 1 3.9337 0.9284 0.8892 33 1 3.7172 3.3983 0.8904 34 1 3.7164 3.3992 -0.8896 35 1 5.7749 4.5735 1.2292 36 1 5.6810 4.9184 -0.5150 37 1 7.9983 5.2026 0.3550 38 1 7.9051 3.8962 -0.8505 39 1 13.2656 2.9497 0.3417 40 1 9.6763 1.3588 2.1531 41 1 11.1973 2.2819 2.2048 42 1 10.1422 3.9356 3.7215 43 1 8.6211 3.0124 3.6698 44 1 10.0717 2.2976 4.4140 45 1 7.9054 1.5686 -0.0916 46 1 7.9992 1.2238 1.6526 47 1 5.7755 2.2462 1.9881 48 1 5.6820 0.9395 0.7825 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255171745.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:40:33 Heat of formation + Delta-G solvation = -13.631868 kcal Electronic energy + Delta-G solvation = -21679.074986 eV Core-core repulsion = 18768.020462 eV Total energy + Delta-G solvation = -2911.054524 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.95047 -36.69466 -35.21173 -32.79538 -31.52693 -30.43480 -30.16625 -27.42842 -25.76156 -24.14847 -23.15158 -22.60149 -21.35207 -20.62435 -19.64946 -18.76298 -16.35330 -15.93783 -15.71550 -14.73219 -14.58645 -14.37742 -14.15177 -13.85668 -13.79459 -13.34173 -13.10125 -12.96332 -12.62671 -12.23518 -11.96104 -11.69147 -11.63550 -11.49584 -11.15690 -11.09488 -11.00867 -10.87491 -10.74627 -10.63126 -10.53295 -10.51521 -10.35842 -10.13865 -9.70808 -9.61435 -9.29229 -9.04322 -8.32079 -7.95525 -7.05848 -5.94686 -4.07738 3.29640 3.36803 3.40765 4.18414 4.43489 4.70753 4.77145 4.94787 5.07333 5.15947 5.23619 5.29456 5.43044 5.50295 5.54896 5.61541 5.67653 5.73049 5.79292 5.87929 5.89961 5.94117 6.00862 6.05000 6.08092 6.21881 6.25541 6.29419 6.33473 6.44580 6.48801 6.65591 6.72653 6.84944 6.94843 7.11301 7.20734 7.35312 7.43234 7.48389 7.66125 7.80132 8.03069 8.20644 8.37665 8.51351 9.02948 9.59671 11.04251 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.022903 B = 0.004085 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.234960 B = 6853.174063 C = 7305.746674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.118 4.118 4 C -0.123 4.123 5 C 0.057 3.943 6 N -0.538 5.538 7 C 0.061 3.939 8 C 0.065 3.935 9 N -0.536 5.536 10 C 0.214 3.786 11 H 0.037 0.963 12 C -0.540 4.540 13 H 0.058 0.942 14 C 0.067 3.933 15 N -0.887 5.887 16 Si 0.887 3.113 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.112 4.112 21 C -0.137 4.137 22 C 0.061 3.939 23 C 0.055 3.945 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.027 0.973 34 H 0.068 0.932 35 H 0.032 0.968 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.260 0.740 40 H 0.033 0.967 41 H 0.092 0.908 42 H 0.038 0.962 43 H 0.046 0.954 44 H 0.024 0.976 45 H 0.046 0.954 46 H 0.072 0.928 47 H 0.030 0.970 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.479 -2.456 0.847 17.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.156 4.156 4 C -0.161 4.161 5 C -0.071 4.071 6 N -0.263 5.263 7 C -0.067 4.067 8 C -0.064 4.064 9 N -0.260 5.260 10 C 0.108 3.892 11 H 0.055 0.945 12 C -0.579 4.579 13 H 0.076 0.924 14 C -0.135 4.135 15 N -0.526 5.526 16 Si 0.715 3.285 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.151 4.151 21 C -0.195 4.195 22 C -0.067 4.067 23 C -0.073 4.073 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.110 0.890 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.044 0.956 45 H 0.064 0.936 46 H 0.090 0.910 47 H 0.049 0.951 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.266 -2.430 0.894 17.459 hybrid contribution 0.473 -0.300 -0.953 1.105 sum -16.793 -2.730 -0.059 17.013 Atomic orbital electron populations 1.21780 0.96122 1.01410 1.01673 1.21529 0.95575 0.97067 1.02099 1.21580 0.95521 0.96638 1.01834 1.21757 0.94687 0.96851 1.02818 1.22102 0.88255 0.96658 1.00117 1.62216 1.06123 1.07930 1.50001 1.22197 0.96523 0.89172 0.98850 1.21890 0.91458 0.96988 0.96085 1.62642 1.11284 1.05534 1.46587 1.19255 0.80585 0.96154 0.93230 0.94502 1.21766 0.91900 1.43821 1.00409 0.92401 1.24907 0.96975 0.95148 0.96440 1.69878 1.02024 1.47942 1.32750 0.86682 0.78219 0.79074 0.84560 1.20778 1.21274 1.20005 1.21622 1.03651 0.97257 0.92521 1.21706 1.00329 0.99511 0.97939 1.21989 0.91222 0.92603 1.00909 1.22331 0.96561 0.95706 0.92733 0.92936 0.92874 0.92846 0.91988 0.92075 0.92273 0.92084 0.91149 0.91589 0.95462 0.91313 0.94953 0.91570 0.91608 0.93575 0.92975 0.94856 0.88958 0.94235 0.93533 0.95641 0.93561 0.91002 0.95125 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.76 16 2 C -0.13 -1.05 5.93 -26.73 -0.16 -1.21 16 3 C -0.12 -1.08 5.21 -26.73 -0.14 -1.22 16 4 C -0.12 -1.37 4.48 -26.73 -0.12 -1.49 16 5 C 0.06 0.72 5.28 -3.82 -0.02 0.70 16 6 N -0.54 -8.58 4.86 -234.46 -1.14 -9.71 16 7 C 0.06 1.00 5.58 -3.77 -0.02 0.98 16 8 C 0.06 1.28 5.32 -3.77 -0.02 1.26 16 9 N -0.54 -11.39 4.15 -227.88 -0.95 -12.34 16 10 C 0.21 5.27 1.75 -68.86 -0.12 5.15 16 11 H 0.04 1.01 8.11 -51.93 -0.42 0.59 16 12 C -0.54 -14.47 7.13 -34.44 -0.25 -14.71 16 13 H 0.06 1.59 5.80 -52.48 -0.30 1.28 16 14 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 15 N -0.89 -25.00 11.29 55.43 0.63 -24.37 16 16 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 C -0.11 -2.66 5.06 -26.73 -0.14 -2.79 16 21 C -0.14 -2.82 9.80 37.16 0.36 -2.45 16 22 C 0.06 1.22 4.96 -3.77 -0.02 1.20 16 23 C 0.05 0.90 4.92 -3.77 -0.02 0.88 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.76 6.26 -51.93 -0.33 0.43 16 33 H 0.03 0.34 8.08 -51.93 -0.42 -0.07 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 38 H 0.05 1.02 6.88 -51.93 -0.36 0.66 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.03 0.77 6.12 -51.93 -0.32 0.45 16 41 H 0.09 2.45 5.95 -51.93 -0.31 2.14 16 42 H 0.04 0.81 8.14 -51.92 -0.42 0.39 16 43 H 0.05 0.92 7.75 -51.93 -0.40 0.52 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.05 1.03 6.51 -51.93 -0.34 0.70 16 46 H 0.07 1.44 6.07 -51.93 -0.32 1.13 16 47 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.07 1.06 5.99 -51.93 -0.31 0.75 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -27.30 355.75 -10.80 -38.10 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -9.30 Total: -0.61 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -0.38 Total: -12.72 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -1.46 Total: -46.43 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.30 -10.80 -38.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255171745.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.465 kcal (2) G-P(sol) polarization free energy of solvation -27.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds