Wall clock time and date at job start Mon Mar 30 2020 19:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47077 * 2 1 4 4 C 1.53006 * 109.46707 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46594 * 180.02562 * 4 3 2 6 6 N 1.46906 * 109.46501 * 180.02562 * 5 4 3 7 7 C 1.46960 * 110.99571 * 189.99540 * 6 5 4 8 8 C 1.53046 * 109.36446 * 183.18469 * 7 6 5 9 9 N 1.46955 * 109.36604 * 301.60343 * 8 7 6 10 10 C 1.46906 * 110.99856 * 183.18610 * 9 8 7 11 11 H 1.08992 * 109.47459 * 54.99712 * 10 9 8 12 12 C 1.50703 * 109.47109 * 294.99794 * 10 9 8 13 13 H 1.08005 * 119.99876 * 0.02562 * 12 10 9 14 14 C 1.37875 * 119.99989 * 180.02562 * 12 10 9 15 15 N 1.31518 * 119.99944 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47418 * 89.99710 * 16 14 12 18 18 H 1.48498 * 109.47091 * 209.99770 * 16 14 12 19 19 H 1.48498 * 109.46997 * 329.99580 * 16 14 12 20 20 C 1.52997 * 109.46907 * 174.99980 * 10 9 8 21 21 C 1.52997 * 109.47181 * 295.00116 * 20 10 9 22 22 C 1.46961 * 110.88018 * 59.32006 * 9 8 7 23 23 C 1.46950 * 111.00159 * 313.79290 * 6 5 4 24 24 H 1.08998 * 109.46923 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46784 * 299.99567 * 1 2 3 26 26 H 1.08999 * 109.47233 * 59.99444 * 1 2 3 27 27 H 1.09001 * 109.46784 * 240.00433 * 2 1 3 28 28 H 1.08996 * 109.46737 * 120.00564 * 2 1 3 29 29 H 1.09001 * 109.46960 * 60.00540 * 3 2 1 30 30 H 1.08996 * 109.47091 * 300.00160 * 3 2 1 31 31 H 1.08994 * 109.47151 * 60.00172 * 4 3 2 32 32 H 1.09001 * 109.46768 * 299.99698 * 4 3 2 33 33 H 1.08994 * 109.47598 * 59.99996 * 5 4 3 34 34 H 1.09004 * 109.46694 * 299.99589 * 5 4 3 35 35 H 1.09004 * 109.48411 * 63.22199 * 7 6 5 36 36 H 1.09002 * 109.49087 * 303.15887 * 7 6 5 37 37 H 1.08995 * 109.49261 * 181.62868 * 8 7 6 38 38 H 1.09005 * 109.50549 * 61.58089 * 8 7 6 39 39 H 0.96997 * 119.99752 * 180.02562 * 15 14 12 40 40 H 1.09004 * 109.47610 * 54.99955 * 20 10 9 41 41 H 1.09001 * 109.47532 * 174.99774 * 20 10 9 42 42 H 1.09007 * 109.46964 * 299.99672 * 21 20 10 43 43 H 1.09000 * 109.47346 * 60.00199 * 21 20 10 44 44 H 1.09004 * 109.47224 * 180.02562 * 21 20 10 45 45 H 1.08995 * 109.48906 * 60.64814 * 22 9 8 46 46 H 1.09005 * 109.48186 * 180.71376 * 22 9 8 47 47 H 1.09003 * 109.49301 * 296.78250 * 23 6 5 48 48 H 1.09005 * 109.48642 * 56.84880 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 7 5.5491 2.8848 -0.0012 7 6 6.0760 4.2358 0.2375 8 6 7.6037 4.2075 0.1497 9 7 8.1311 3.2573 1.1389 10 6 9.6002 3.2572 1.1376 11 1 9.9637 4.2726 1.2952 12 6 10.1014 2.7443 -0.1878 13 1 9.3989 2.4483 -0.9529 14 6 11.4567 2.6528 -0.4237 15 7 12.3121 3.0137 0.5078 16 14 12.0780 2.0177 -2.0669 17 1 12.2429 3.1553 -3.0070 18 1 13.3860 1.3416 -1.8737 19 1 11.0991 1.0512 -2.6261 20 6 10.1110 2.3526 2.2608 21 6 9.7074 2.9418 3.6138 22 6 7.6042 1.9063 0.9001 23 6 6.0766 1.9346 0.9879 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6768 1.9563 0.8901 30 1 1.6767 1.9563 -0.8899 31 1 3.9330 0.9287 -0.8908 32 1 3.9337 0.9284 0.8892 33 1 3.7172 3.3983 0.8904 34 1 3.7164 3.3992 -0.8896 35 1 5.7749 4.5735 1.2292 36 1 5.6810 4.9184 -0.5150 37 1 7.9983 5.2026 0.3550 38 1 7.9051 3.8962 -0.8505 39 1 13.2656 2.9497 0.3417 40 1 9.6763 1.3588 2.1531 41 1 11.1973 2.2819 2.2048 42 1 10.1422 3.9356 3.7215 43 1 8.6211 3.0124 3.6698 44 1 10.0717 2.2976 4.4140 45 1 7.9054 1.5686 -0.0916 46 1 7.9992 1.2238 1.6526 47 1 5.7755 2.2462 1.9881 48 1 5.6820 0.9395 0.7825 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255171745.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:40:32 Heat of formation + Delta-G solvation = -29.182194 kcal Electronic energy + Delta-G solvation = -21679.749298 eV Core-core repulsion = 18768.020462 eV Total energy + Delta-G solvation = -2911.728836 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.40914 -38.03516 -36.31982 -34.49371 -33.24907 -31.76645 -31.48848 -29.00163 -27.27087 -25.47403 -24.62665 -24.27695 -22.19547 -21.63645 -21.29382 -20.48520 -18.27833 -17.39931 -16.67827 -16.48316 -15.84669 -15.78052 -15.52832 -15.30724 -15.16838 -14.71388 -14.37651 -14.14137 -13.84959 -13.69004 -13.36589 -13.23194 -12.95634 -12.88545 -12.66892 -12.59454 -12.48904 -12.13988 -12.06078 -12.02044 -11.84930 -11.74540 -11.61089 -11.56513 -11.36452 -11.19226 -11.08336 -10.91229 -10.41557 -9.21032 -8.90252 -8.02262 -6.24546 1.36202 1.38330 1.47465 2.40520 3.00629 3.15500 3.44103 3.86128 4.04607 4.10103 4.25389 4.29623 4.31811 4.37103 4.49333 4.56169 4.60339 4.65383 4.69256 4.74483 4.75700 4.78817 4.86636 4.90100 4.94410 4.98009 5.06397 5.12845 5.16815 5.18250 5.25290 5.27143 5.31103 5.36372 5.41991 5.48242 5.50097 5.53785 5.63943 5.79685 6.04046 6.16359 6.19749 6.27097 6.42814 6.67599 6.96581 7.45956 8.92388 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.022903 B = 0.004085 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.234960 B = 6853.174063 C = 7305.746674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.118 4.118 5 C 0.059 3.941 6 N -0.553 5.553 7 C 0.072 3.928 8 C 0.065 3.935 9 N -0.531 5.531 10 C 0.220 3.780 11 H 0.002 0.998 12 C -0.548 4.548 13 H 0.046 0.954 14 C 0.022 3.978 15 N -0.911 5.911 16 Si 0.945 3.055 17 H -0.278 1.278 18 H -0.281 1.281 19 H -0.275 1.275 20 C -0.107 4.107 21 C -0.125 4.125 22 C 0.066 3.934 23 C 0.067 3.933 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.077 0.923 35 H 0.038 0.962 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.018 0.982 39 H 0.261 0.739 40 H 0.033 0.967 41 H 0.062 0.938 42 H 0.032 0.968 43 H 0.055 0.945 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.068 0.932 47 H 0.036 0.964 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.542 -2.890 0.894 19.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.149 4.149 4 C -0.156 4.156 5 C -0.068 4.068 6 N -0.278 5.278 7 C -0.057 4.057 8 C -0.064 4.064 9 N -0.255 5.255 10 C 0.113 3.887 11 H 0.020 0.980 12 C -0.587 4.587 13 H 0.064 0.936 14 C -0.178 4.178 15 N -0.551 5.551 16 Si 0.771 3.229 17 H -0.204 1.204 18 H -0.207 1.207 19 H -0.200 1.200 20 C -0.145 4.145 21 C -0.182 4.182 22 C -0.063 4.063 23 C -0.061 4.061 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.036 0.964 39 H 0.071 0.929 40 H 0.052 0.948 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.035 0.965 46 H 0.086 0.914 47 H 0.054 0.946 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.351 -2.864 0.939 19.584 hybrid contribution 1.099 -0.151 -0.983 1.482 sum -18.252 -3.015 -0.044 18.500 Atomic orbital electron populations 1.21770 0.95255 1.01890 1.01970 1.21527 0.96350 0.96536 1.01915 1.21525 0.93910 0.97221 1.02289 1.21702 0.96072 0.95594 1.02212 1.22165 0.85836 0.97923 1.00865 1.62193 1.08375 1.07375 1.49895 1.22066 0.93555 0.90126 0.99915 1.21913 0.94293 0.96168 0.94033 1.62608 1.09186 1.06695 1.47045 1.19029 0.82776 0.94106 0.92793 0.97990 1.21948 0.91960 1.43622 1.01154 0.93594 1.25581 0.97243 0.95523 0.99425 1.69997 1.02160 1.48708 1.34187 0.85764 0.77689 0.78498 0.80924 1.20437 1.20663 1.19955 1.21458 1.01610 0.97303 0.94128 1.21558 1.00808 0.99280 0.96546 1.21972 0.93964 0.91418 0.98959 1.22192 0.93630 0.97082 0.93235 0.92428 0.92561 0.92569 0.92282 0.92215 0.91787 0.91628 0.92055 0.91860 0.94701 0.90423 0.94356 0.89501 0.92094 0.96386 0.92940 0.94812 0.91940 0.94900 0.92632 0.93449 0.96534 0.91378 0.94609 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 71.98 0.71 -1.18 16 2 C -0.13 -1.85 5.93 30.60 0.18 -1.67 16 3 C -0.11 -1.75 5.21 30.60 0.16 -1.59 16 4 C -0.12 -2.34 4.48 30.60 0.14 -2.21 16 5 C 0.06 1.35 5.28 86.30 0.46 1.81 16 6 N -0.55 -16.64 4.86 -895.69 -4.35 -20.99 16 7 C 0.07 2.23 5.58 86.31 0.48 2.71 16 8 C 0.06 2.59 5.32 86.31 0.46 3.05 16 9 N -0.53 -22.80 4.15 -874.87 -3.63 -26.43 16 10 C 0.22 11.16 1.75 44.17 0.08 11.24 16 11 H 0.00 0.12 8.11 -2.39 -0.02 0.11 16 12 C -0.55 -30.22 7.13 25.60 0.18 -30.04 16 13 H 0.05 2.60 5.80 -2.91 -0.02 2.59 16 14 C 0.02 1.22 5.29 84.65 0.45 1.67 16 15 N -0.91 -52.50 11.29 21.45 0.24 -52.26 16 16 Si 0.94 44.41 29.54 68.60 2.03 46.44 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 20 C -0.11 -5.12 5.06 30.59 0.15 -4.97 16 21 C -0.12 -5.02 9.80 71.98 0.71 -4.31 16 22 C 0.07 2.60 4.96 86.31 0.43 3.03 16 23 C 0.07 2.08 4.92 86.31 0.43 2.50 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.29 6.26 -2.39 -0.01 1.28 16 33 H 0.03 0.76 8.08 -2.39 -0.02 0.75 16 34 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.06 2.44 8.12 -2.39 -0.02 2.42 16 38 H 0.02 0.81 6.88 -2.38 -0.02 0.80 16 39 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 40 H 0.03 1.58 6.12 -2.39 -0.01 1.56 16 41 H 0.06 3.40 5.95 -2.39 -0.01 3.38 16 42 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 43 H 0.05 2.12 7.75 -2.39 -0.02 2.10 16 44 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 45 H 0.02 0.75 6.51 -2.39 -0.02 0.73 16 46 H 0.07 2.72 6.07 -2.38 -0.01 2.70 16 47 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.09 2.50 5.99 -2.38 -0.01 2.49 16 Total: -1.00 -59.20 355.75 0.17 -59.03 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.88 Total: 14.17 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 5.01 Total: -19.96 kcal Atomic # 7 Polarization: -91.94 SS G_CDS: -7.74 Total: -99.68 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -59.20 0.17 -59.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255171745.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.845 kcal (2) G-P(sol) polarization free energy of solvation -59.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds