Wall clock time and date at job start Mon Mar 30 2020 19:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47200 * 2 1 4 4 H 1.09004 * 109.46832 * 302.86544 * 3 2 1 5 5 C 1.50701 * 109.46998 * 182.86589 * 3 2 1 6 6 H 1.08000 * 119.99895 * 240.00240 * 5 3 2 7 7 C 1.37872 * 119.99957 * 59.72387 * 5 3 2 8 8 N 1.31518 * 120.00063 * 0.27309 * 7 5 3 9 9 Si 1.86807 * 120.00066 * 180.27794 * 7 5 3 10 10 H 1.48497 * 109.47059 * 89.99623 * 9 7 5 11 11 H 1.48496 * 109.46951 * 210.00189 * 9 7 5 12 12 H 1.48504 * 109.46476 * 329.99573 * 9 7 5 13 13 N 1.46898 * 109.46965 * 62.86718 * 3 2 1 14 14 C 1.46897 * 111.00481 * 70.50449 * 13 3 2 15 15 C 1.52994 * 109.47362 * 196.38081 * 14 13 3 16 16 C 1.46905 * 110.99829 * 194.45579 * 13 3 2 17 17 C 1.53006 * 109.47067 * 76.11190 * 16 13 3 18 18 N 1.46901 * 109.46943 * 184.03489 * 17 16 13 19 19 C 1.46848 * 110.99709 * 294.20793 * 18 17 16 20 20 C 1.53037 * 109.52131 * 174.16391 * 19 18 17 21 21 C 1.53120 * 109.27880 * 59.17668 * 20 19 18 22 22 C 1.53119 * 109.16368 * 302.34650 * 21 20 19 23 23 C 1.46845 * 110.99735 * 170.00134 * 18 17 16 24 24 H 1.08997 * 109.47581 * 184.56205 * 1 2 3 25 25 H 1.08998 * 109.47463 * 304.56362 * 1 2 3 26 26 H 1.09004 * 109.46931 * 64.56262 * 1 2 3 27 27 H 1.08997 * 109.46947 * 239.99307 * 2 1 3 28 28 H 1.09000 * 109.46420 * 119.99677 * 2 1 3 29 29 H 0.96995 * 119.99790 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.46494 * 316.37932 * 14 13 3 31 31 H 1.08995 * 109.47205 * 76.37452 * 14 13 3 32 32 H 1.09006 * 109.47145 * 303.45649 * 15 14 13 33 33 H 1.09002 * 109.47616 * 63.45088 * 15 14 13 34 34 H 1.08998 * 109.47703 * 183.45594 * 15 14 13 35 35 H 1.08994 * 109.47525 * 196.11217 * 16 13 3 36 36 H 1.09002 * 109.47225 * 316.11604 * 16 13 3 37 37 H 1.09007 * 109.46857 * 304.02992 * 17 16 13 38 38 H 1.08998 * 109.47370 * 64.03037 * 17 16 13 39 39 H 1.09001 * 109.46277 * 294.17587 * 19 18 17 40 40 H 1.08999 * 109.46246 * 54.14839 * 19 18 17 41 41 H 1.08999 * 109.50140 * 299.23958 * 20 19 18 42 42 H 1.08999 * 109.50776 * 179.12224 * 20 19 18 43 43 H 1.08997 * 109.52300 * 182.43981 * 21 20 19 44 44 H 1.08997 * 109.52307 * 62.25367 * 21 20 19 45 45 H 1.08996 * 109.50348 * 297.71374 * 22 21 20 46 46 H 1.08994 * 109.50158 * 177.59521 * 22 21 20 47 47 H 1.09006 * 109.46377 * 305.85120 * 23 18 17 48 48 H 1.09002 * 109.46567 * 65.82138 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6353 1.9709 -0.8632 5 6 3.5454 1.4430 -0.0710 6 1 4.1231 1.8973 0.7203 7 6 4.1851 0.8586 -1.1434 8 7 3.4815 0.3053 -2.1071 9 14 6.0512 0.8524 -1.2277 10 1 6.5724 -0.3716 -0.5678 11 1 6.4826 0.8707 -2.6485 12 1 6.5819 2.0532 -0.5337 13 7 1.6077 2.1147 1.2326 14 6 2.3280 1.5885 2.3997 15 6 1.5920 1.9932 3.6784 16 6 1.7733 3.5703 1.1242 17 6 0.6571 4.1469 0.2508 18 7 0.8770 5.5872 0.0629 19 6 0.7421 6.3103 1.3339 20 6 1.1190 7.7793 1.1290 21 6 0.1994 8.3942 0.0703 22 6 0.3225 7.5933 -1.2289 23 6 -0.0312 6.1297 -0.9555 24 1 -0.3634 -1.0244 0.0817 25 1 -0.3634 0.5830 0.8462 26 1 -0.3633 0.4414 -0.9281 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 3.9316 -0.1062 -2.8613 30 1 2.3764 0.5013 2.3369 31 1 3.3385 1.9966 2.4174 32 1 1.4895 3.0780 3.7108 33 1 0.6032 1.5346 3.6893 34 1 2.1586 1.6557 4.5462 35 1 1.7246 4.0165 2.1174 36 1 2.7399 3.7935 0.6726 37 1 0.6608 3.6493 -0.7190 38 1 -0.3048 3.9866 0.7377 39 1 -0.2890 6.2449 1.6813 40 1 1.4044 5.8656 2.0767 41 1 2.1543 7.8461 0.7947 42 1 1.0039 8.3191 2.0689 43 1 0.4922 9.4284 -0.1102 44 1 -0.8321 8.3627 0.4212 45 1 1.3453 7.6572 -1.6002 46 1 -0.3616 8.0002 -1.9734 47 1 0.0693 5.5538 -1.8756 48 1 -1.0587 6.0652 -0.5974 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174998.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:40:45 Heat of formation + Delta-G solvation = -10.769999 kcal Electronic energy + Delta-G solvation = -22269.410590 eV Core-core repulsion = 19358.480166 eV Total energy + Delta-G solvation = -2910.930424 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.90992 -37.38814 -33.79660 -32.87943 -31.28621 -30.74980 -29.92725 -27.66055 -25.73137 -23.89863 -22.89790 -22.83546 -21.40692 -20.52944 -19.56706 -18.72532 -16.14398 -15.90148 -15.17401 -15.00996 -14.39102 -14.32582 -14.15862 -13.85199 -13.52820 -13.23357 -13.05703 -12.84227 -12.38115 -12.19501 -12.00270 -11.73213 -11.51951 -11.19446 -11.12136 -11.07989 -10.89044 -10.80817 -10.69644 -10.55126 -10.47953 -10.30175 -10.15701 -9.98034 -9.70699 -9.59560 -9.29370 -8.94283 -8.29556 -7.97405 -7.06305 -5.93816 -4.05790 3.29970 3.37260 3.40512 4.12492 4.44332 4.87108 4.92658 4.96733 5.21013 5.30939 5.33543 5.48815 5.60836 5.66645 5.68648 5.74861 5.82688 5.91711 5.94785 5.98399 6.06198 6.12343 6.16613 6.18804 6.25558 6.30445 6.40145 6.43032 6.45849 6.54180 6.64792 6.69780 6.75816 6.90125 6.95919 7.17996 7.21654 7.41211 7.45455 7.47055 7.66668 7.82257 8.06637 8.22056 8.40595 8.55005 9.04018 9.61305 11.05777 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.015818 B = 0.005709 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.723640 B = 4903.608147 C = 5455.219977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.214 3.786 4 H 0.039 0.961 5 C -0.539 4.539 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.887 5.887 9 Si 0.885 3.115 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.536 5.536 14 C 0.062 3.938 15 C -0.146 4.146 16 C 0.064 3.936 17 C 0.068 3.932 18 N -0.536 5.536 19 C 0.055 3.945 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.117 4.117 23 C 0.058 3.942 24 H 0.023 0.977 25 H 0.050 0.950 26 H 0.035 0.965 27 H 0.090 0.910 28 H 0.031 0.969 29 H 0.260 0.740 30 H 0.071 0.929 31 H 0.031 0.969 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.078 0.922 38 H 0.029 0.971 39 H 0.027 0.973 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.071 0.929 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.807 10.655 5.505 13.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C 0.107 3.893 4 H 0.056 0.944 5 C -0.578 4.578 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.713 3.287 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.261 5.261 14 C -0.066 4.066 15 C -0.204 4.204 16 C -0.065 4.065 17 C -0.060 4.060 18 N -0.262 5.262 19 C -0.073 4.073 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.154 4.154 23 C -0.070 4.070 24 H 0.042 0.958 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.109 0.891 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.047 0.953 39 H 0.045 0.955 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.093 0.907 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -6.814 10.518 5.221 13.576 hybrid contribution 1.136 -0.045 0.016 1.137 sum -5.678 10.473 5.237 13.013 Atomic orbital electron populations 1.21715 0.99029 0.98404 1.00435 1.21582 0.92068 0.99362 1.01779 1.19298 0.92678 0.90937 0.86362 0.94360 1.21752 0.92718 1.37017 1.06277 0.92598 1.24890 0.97758 0.95163 0.95561 1.69873 1.34840 1.37865 1.09950 0.86706 0.86500 0.78296 0.77164 1.20799 1.21267 1.20089 1.62341 1.56214 1.02474 1.05026 1.21807 0.94925 1.00339 0.89528 1.21856 1.00597 1.00563 0.97340 1.21859 0.97634 0.89553 0.97411 1.22027 0.97226 0.85622 1.01101 1.61827 1.52946 1.03657 1.07734 1.22093 0.99165 0.94010 0.92050 1.21592 1.00444 0.95073 0.98387 1.21565 0.99444 0.98823 0.95892 1.21583 1.02319 0.94545 0.96996 1.22034 0.93525 0.95502 0.95981 0.95753 0.93117 0.94537 0.89133 0.95014 0.93009 0.91019 0.95104 0.93659 0.92913 0.93707 0.93131 0.93144 0.90332 0.95294 0.95524 0.90596 0.91115 0.92065 0.92235 0.92615 0.91065 0.91981 0.90725 0.95490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.84 37.16 0.37 -2.45 16 2 C -0.11 -2.58 5.20 -26.73 -0.14 -2.72 16 3 C 0.21 5.16 1.61 -68.87 -0.11 5.05 16 4 H 0.04 1.03 6.53 -51.93 -0.34 0.69 16 5 C -0.54 -14.32 7.06 -34.44 -0.24 -14.56 16 6 H 0.06 1.51 6.14 -52.49 -0.32 1.19 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 8 N -0.89 -24.92 11.29 55.43 0.63 -24.29 16 9 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.54 -11.07 3.58 -228.04 -0.82 -11.89 16 14 C 0.06 1.22 4.66 -3.83 -0.02 1.20 16 15 C -0.15 -2.30 10.03 37.15 0.37 -1.93 16 16 C 0.06 1.24 4.54 -3.82 -0.02 1.22 16 17 C 0.07 1.20 5.12 -3.82 -0.02 1.18 16 18 N -0.54 -8.41 4.66 -234.66 -1.09 -9.50 16 19 C 0.05 0.74 5.29 -3.83 -0.02 0.72 16 20 C -0.12 -1.34 6.09 -26.65 -0.16 -1.51 16 21 C -0.12 -1.26 6.00 -26.61 -0.16 -1.42 16 22 C -0.12 -1.35 6.09 -26.65 -0.16 -1.51 16 23 C 0.06 0.79 5.46 -3.83 -0.02 0.77 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 1.00 7.56 -51.93 -0.39 0.61 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.09 2.40 5.99 -51.93 -0.31 2.09 16 28 H 0.03 0.74 6.38 -51.93 -0.33 0.41 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.07 1.48 6.16 -51.93 -0.32 1.16 16 31 H 0.03 0.64 6.60 -51.93 -0.34 0.30 16 32 H 0.04 0.69 6.48 -51.93 -0.34 0.35 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.89 4.71 -51.93 -0.24 0.64 16 36 H 0.05 1.13 7.25 -51.93 -0.38 0.75 16 37 H 0.08 1.57 6.53 -51.93 -0.34 1.23 16 38 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 39 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 1.06 6.29 -51.93 -0.33 0.73 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 1.07 8.02 -51.93 -0.42 0.65 16 48 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 351.46 15.07 5.30 5.30 Total: -1.00 -26.97 351.46 -10.47 -37.44 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -9.03 Total: 0.84 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -0.43 Total: -14.18 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: -1.28 Total: -45.69 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -26.97 -10.47 -37.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174998.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.671 kcal (2) G-P(sol) polarization free energy of solvation -26.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds