Wall clock time and date at job start Mon Mar 30 2020 19:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47200 * 2 1 4 4 H 1.09004 * 109.46832 * 302.86544 * 3 2 1 5 5 C 1.50701 * 109.46998 * 182.86589 * 3 2 1 6 6 H 1.08000 * 119.99895 * 240.00240 * 5 3 2 7 7 C 1.37872 * 119.99957 * 59.72387 * 5 3 2 8 8 N 1.31518 * 120.00063 * 0.27309 * 7 5 3 9 9 Si 1.86807 * 120.00066 * 180.27794 * 7 5 3 10 10 H 1.48497 * 109.47059 * 89.99623 * 9 7 5 11 11 H 1.48496 * 109.46951 * 210.00189 * 9 7 5 12 12 H 1.48504 * 109.46476 * 329.99573 * 9 7 5 13 13 N 1.46898 * 109.46965 * 62.86718 * 3 2 1 14 14 C 1.46897 * 111.00481 * 70.50449 * 13 3 2 15 15 C 1.52994 * 109.47362 * 196.38081 * 14 13 3 16 16 C 1.46905 * 110.99829 * 194.45579 * 13 3 2 17 17 C 1.53006 * 109.47067 * 76.11190 * 16 13 3 18 18 N 1.46901 * 109.46943 * 184.03489 * 17 16 13 19 19 C 1.46848 * 110.99709 * 294.20793 * 18 17 16 20 20 C 1.53037 * 109.52131 * 174.16391 * 19 18 17 21 21 C 1.53120 * 109.27880 * 59.17668 * 20 19 18 22 22 C 1.53119 * 109.16368 * 302.34650 * 21 20 19 23 23 C 1.46845 * 110.99735 * 170.00134 * 18 17 16 24 24 H 1.08997 * 109.47581 * 184.56205 * 1 2 3 25 25 H 1.08998 * 109.47463 * 304.56362 * 1 2 3 26 26 H 1.09004 * 109.46931 * 64.56262 * 1 2 3 27 27 H 1.08997 * 109.46947 * 239.99307 * 2 1 3 28 28 H 1.09000 * 109.46420 * 119.99677 * 2 1 3 29 29 H 0.96995 * 119.99790 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.46494 * 316.37932 * 14 13 3 31 31 H 1.08995 * 109.47205 * 76.37452 * 14 13 3 32 32 H 1.09006 * 109.47145 * 303.45649 * 15 14 13 33 33 H 1.09002 * 109.47616 * 63.45088 * 15 14 13 34 34 H 1.08998 * 109.47703 * 183.45594 * 15 14 13 35 35 H 1.08994 * 109.47525 * 196.11217 * 16 13 3 36 36 H 1.09002 * 109.47225 * 316.11604 * 16 13 3 37 37 H 1.09007 * 109.46857 * 304.02992 * 17 16 13 38 38 H 1.08998 * 109.47370 * 64.03037 * 17 16 13 39 39 H 1.09001 * 109.46277 * 294.17587 * 19 18 17 40 40 H 1.08999 * 109.46246 * 54.14839 * 19 18 17 41 41 H 1.08999 * 109.50140 * 299.23958 * 20 19 18 42 42 H 1.08999 * 109.50776 * 179.12224 * 20 19 18 43 43 H 1.08997 * 109.52300 * 182.43981 * 21 20 19 44 44 H 1.08997 * 109.52307 * 62.25367 * 21 20 19 45 45 H 1.08996 * 109.50348 * 297.71374 * 22 21 20 46 46 H 1.08994 * 109.50158 * 177.59521 * 22 21 20 47 47 H 1.09006 * 109.46377 * 305.85120 * 23 18 17 48 48 H 1.09002 * 109.46567 * 65.82138 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6353 1.9709 -0.8632 5 6 3.5454 1.4430 -0.0710 6 1 4.1231 1.8973 0.7203 7 6 4.1851 0.8586 -1.1434 8 7 3.4815 0.3053 -2.1071 9 14 6.0512 0.8524 -1.2277 10 1 6.5724 -0.3716 -0.5678 11 1 6.4826 0.8707 -2.6485 12 1 6.5819 2.0532 -0.5337 13 7 1.6077 2.1147 1.2326 14 6 2.3280 1.5885 2.3997 15 6 1.5920 1.9932 3.6784 16 6 1.7733 3.5703 1.1242 17 6 0.6571 4.1469 0.2508 18 7 0.8770 5.5872 0.0629 19 6 0.7421 6.3103 1.3339 20 6 1.1190 7.7793 1.1290 21 6 0.1994 8.3942 0.0703 22 6 0.3225 7.5933 -1.2289 23 6 -0.0312 6.1297 -0.9555 24 1 -0.3634 -1.0244 0.0817 25 1 -0.3634 0.5830 0.8462 26 1 -0.3633 0.4414 -0.9281 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 3.9316 -0.1062 -2.8613 30 1 2.3764 0.5013 2.3369 31 1 3.3385 1.9966 2.4174 32 1 1.4895 3.0780 3.7108 33 1 0.6032 1.5346 3.6893 34 1 2.1586 1.6557 4.5462 35 1 1.7246 4.0165 2.1174 36 1 2.7399 3.7935 0.6726 37 1 0.6608 3.6493 -0.7190 38 1 -0.3048 3.9866 0.7377 39 1 -0.2890 6.2449 1.6813 40 1 1.4044 5.8656 2.0767 41 1 2.1543 7.8461 0.7947 42 1 1.0039 8.3191 2.0689 43 1 0.4922 9.4284 -0.1102 44 1 -0.8321 8.3627 0.4212 45 1 1.3453 7.6572 -1.6002 46 1 -0.3616 8.0002 -1.9734 47 1 0.0693 5.5538 -1.8756 48 1 -1.0587 6.0652 -0.5974 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174998.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:40:45 Heat of formation + Delta-G solvation = -25.813670 kcal Electronic energy + Delta-G solvation = -22270.062932 eV Core-core repulsion = 19358.480166 eV Total energy + Delta-G solvation = -2911.582766 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.15220 -38.99509 -35.31449 -34.44897 -33.18318 -31.78467 -31.35241 -29.30514 -27.47421 -25.31373 -24.52169 -23.94793 -22.87956 -22.10733 -20.63517 -20.51927 -18.10951 -17.18449 -17.01748 -16.35221 -16.08480 -15.55019 -15.36593 -15.21794 -14.92902 -14.71288 -14.44895 -14.27712 -13.80610 -13.59635 -13.52391 -13.11629 -13.04773 -12.87636 -12.75160 -12.72067 -12.39217 -12.21280 -12.10892 -12.06173 -11.97970 -11.59724 -11.56964 -11.51062 -11.25810 -11.08977 -11.07109 -10.82462 -10.37744 -9.19933 -8.88702 -8.00917 -6.21837 1.35894 1.37940 1.46319 2.41034 2.87405 3.18014 3.60963 3.91949 3.94128 4.07175 4.17354 4.30435 4.36598 4.43013 4.51168 4.58604 4.62115 4.67584 4.70070 4.74641 4.79124 4.82490 4.89555 4.94818 4.96658 4.98509 5.08351 5.10534 5.15025 5.20395 5.24559 5.27140 5.32375 5.36430 5.43910 5.47770 5.51638 5.56775 5.66532 5.82749 6.09477 6.19533 6.25160 6.28671 6.45957 6.74160 6.99753 7.48328 8.94250 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.015818 B = 0.005709 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.723640 B = 4903.608147 C = 5455.219977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.222 3.778 4 H 0.006 0.994 5 C -0.547 4.547 6 H 0.047 0.953 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.942 3.058 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.276 1.276 13 N -0.529 5.529 14 C 0.062 3.938 15 C -0.133 4.133 16 C 0.074 3.926 17 C 0.082 3.918 18 N -0.553 5.553 19 C 0.054 3.946 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.113 4.113 23 C 0.055 3.945 24 H 0.044 0.956 25 H 0.059 0.941 26 H 0.030 0.970 27 H 0.060 0.940 28 H 0.029 0.971 29 H 0.260 0.740 30 H 0.057 0.943 31 H 0.012 0.988 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.014 0.986 37 H 0.047 0.953 38 H 0.036 0.964 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.081 0.919 47 H 0.059 0.941 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.585 11.999 7.059 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.115 3.885 4 H 0.023 0.977 5 C -0.586 4.586 6 H 0.065 0.935 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.768 3.232 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.253 5.253 14 C -0.067 4.067 15 C -0.191 4.191 16 C -0.055 4.055 17 C -0.046 4.046 18 N -0.278 5.278 19 C -0.074 4.074 20 C -0.152 4.152 21 C -0.153 4.153 22 C -0.151 4.151 23 C -0.072 4.072 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.032 0.968 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.100 0.900 47 H 0.077 0.923 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.595 11.873 6.788 15.644 hybrid contribution 1.379 -0.442 -0.458 1.519 sum -6.216 11.430 6.330 14.469 Atomic orbital electron populations 1.21564 0.96329 0.99866 1.00499 1.21422 0.94433 0.98361 1.00078 1.19035 0.91271 0.91295 0.86883 0.97652 1.21998 0.94165 1.36484 1.05948 0.93482 1.25562 1.01599 0.95141 0.95451 1.69998 1.36185 1.38541 1.10346 0.85811 0.81958 0.78270 0.77119 1.20112 1.20965 1.20113 1.62358 1.55785 1.03131 1.04059 1.21861 0.94602 0.99362 0.90833 1.21738 1.00597 1.01108 0.95618 1.21807 0.96361 0.88785 0.98557 1.21751 0.96776 0.87096 0.99011 1.61816 1.54022 1.02558 1.09424 1.22165 0.99469 0.95089 0.90674 1.21591 0.99942 0.93774 0.99892 1.21561 0.99746 0.99382 0.94647 1.21577 1.02012 0.93132 0.98377 1.22095 0.93601 0.96751 0.94800 0.93668 0.92221 0.95086 0.92180 0.95226 0.93066 0.92449 0.96950 0.92850 0.92259 0.91497 0.90900 0.96794 0.93415 0.94587 0.94737 0.91300 0.92331 0.89840 0.90422 0.91675 0.92354 0.90019 0.92271 0.94672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 9.84 71.98 0.71 -4.33 16 2 C -0.10 -5.03 5.20 30.59 0.16 -4.87 16 3 C 0.22 11.12 1.61 44.17 0.07 11.19 16 4 H 0.01 0.32 6.53 -2.38 -0.02 0.30 16 5 C -0.55 -30.01 7.06 25.60 0.18 -29.83 16 6 H 0.05 2.62 6.14 -2.91 -0.02 2.60 16 7 C 0.02 1.23 5.29 84.65 0.45 1.68 16 8 N -0.91 -52.74 11.29 21.45 0.24 -52.50 16 9 Si 0.94 44.54 29.54 68.60 2.03 46.56 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 13 N -0.53 -22.09 3.58 -875.38 -3.14 -25.23 16 14 C 0.06 2.39 4.66 86.30 0.40 2.79 16 15 C -0.13 -3.89 10.03 71.98 0.72 -3.17 16 16 C 0.07 2.87 4.54 86.30 0.39 3.26 16 17 C 0.08 2.95 5.12 86.30 0.44 3.39 16 18 N -0.55 -17.28 4.66 -896.32 -4.17 -21.45 16 19 C 0.05 1.37 5.29 86.33 0.46 1.83 16 20 C -0.11 -2.36 6.09 30.65 0.19 -2.18 16 21 C -0.12 -2.12 6.00 30.67 0.18 -1.93 16 22 C -0.11 -2.45 6.09 30.65 0.19 -2.26 16 23 C 0.06 1.50 5.46 86.33 0.47 1.97 16 24 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.06 2.28 7.56 -2.39 -0.02 2.26 16 26 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.06 3.28 5.99 -2.39 -0.01 3.26 16 28 H 0.03 1.40 6.38 -2.39 -0.02 1.38 16 29 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 30 H 0.06 2.37 6.16 -2.39 -0.01 2.36 16 31 H 0.01 0.52 6.60 -2.39 -0.02 0.50 16 32 H 0.05 1.47 6.48 -2.38 -0.02 1.46 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 2.50 4.71 -2.39 -0.01 2.49 16 36 H 0.01 0.64 7.25 -2.39 -0.02 0.62 16 37 H 0.05 2.00 6.53 -2.38 -0.02 1.99 16 38 H 0.04 1.23 8.12 -2.39 -0.02 1.21 16 39 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.07 1.83 6.29 -2.39 -0.02 1.81 16 41 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.06 1.74 8.02 -2.38 -0.02 1.72 16 48 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -59.48 351.46 0.86 -58.62 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.89 Total: 16.45 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: 5.01 Total: -22.45 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -7.07 Total: -99.18 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -59.48 0.86 -58.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174998.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.806 kcal (2) G-P(sol) polarization free energy of solvation -59.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds