Wall clock time and date at job start Mon Mar 30 2020 19:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46905 * 109.47262 * 2 1 4 4 C 1.46905 * 111.00120 * 295.04306 * 3 2 1 5 5 C 1.50703 * 109.46641 * 294.32333 * 4 3 2 6 6 H 1.08000 * 120.00293 * 356.22698 * 5 4 3 7 7 C 1.37883 * 119.99524 * 176.23078 * 5 4 3 8 8 N 1.31517 * 119.99400 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00269 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.46905 * 89.99916 * 9 7 5 11 11 H 1.48497 * 109.47141 * 210.00417 * 9 7 5 12 12 H 1.48504 * 109.46904 * 330.00248 * 9 7 5 13 13 C 1.46904 * 110.99836 * 58.99286 * 3 2 1 14 14 C 1.53120 * 109.51969 * 56.04645 * 13 3 2 15 15 C 1.53041 * 109.27589 * 177.55643 * 14 13 3 16 16 N 1.46841 * 109.52674 * 300.82572 * 15 14 13 17 17 C 1.46895 * 111.00381 * 185.84004 * 16 15 14 18 18 C 1.53002 * 109.47129 * 59.99618 * 17 16 15 19 19 C 1.53001 * 109.47521 * 179.97438 * 17 16 15 20 20 C 1.53002 * 109.46860 * 299.99621 * 17 16 15 21 21 C 1.46844 * 111.20054 * 61.73761 * 16 15 14 22 22 C 1.53038 * 109.52467 * 298.26104 * 21 16 15 23 23 H 1.09003 * 109.47010 * 301.86022 * 1 2 3 24 24 H 1.09003 * 109.47331 * 61.85827 * 1 2 3 25 25 H 1.08997 * 109.47320 * 181.85768 * 1 2 3 26 26 H 1.09001 * 109.47341 * 240.00370 * 2 1 3 27 27 H 1.08996 * 109.47314 * 120.00355 * 2 1 3 28 28 H 1.09002 * 109.47091 * 54.32131 * 4 3 2 29 29 H 1.08994 * 109.47103 * 174.32573 * 4 3 2 30 30 H 0.97007 * 119.99370 * 179.97438 * 8 7 5 31 31 H 1.08997 * 109.57178 * 295.89127 * 13 3 2 32 32 H 1.09001 * 109.50494 * 57.61912 * 14 13 3 33 33 H 1.08997 * 109.50346 * 297.49542 * 14 13 3 34 34 H 1.08995 * 109.46238 * 180.80421 * 15 14 13 35 35 H 1.09008 * 109.45753 * 60.83922 * 15 14 13 36 36 H 1.08992 * 109.47556 * 60.00268 * 18 17 16 37 37 H 1.09002 * 109.46898 * 180.02562 * 18 17 16 38 38 H 1.09000 * 109.46978 * 300.00113 * 18 17 16 39 39 H 1.09002 * 109.46764 * 59.99586 * 19 17 16 40 40 H 1.09003 * 109.46839 * 179.97438 * 19 17 16 41 41 H 1.08998 * 109.46619 * 299.99924 * 19 17 16 42 42 H 1.09000 * 109.47235 * 59.99895 * 20 17 16 43 43 H 1.09003 * 109.47269 * 179.97438 * 20 17 16 44 44 H 1.08999 * 109.47616 * 299.99948 * 20 17 16 45 45 H 1.09002 * 109.45937 * 58.27669 * 21 16 15 46 46 H 1.09002 * 109.46187 * 178.24389 * 21 16 15 47 47 H 1.09001 * 109.50506 * 299.23805 * 22 21 16 48 48 H 1.09007 * 109.50485 * 179.11690 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6479 2.0749 -1.2425 5 6 2.3609 1.4342 -2.4054 6 1 3.0701 0.6384 -2.2320 7 6 2.1078 1.8642 -3.6908 8 7 2.7296 1.3047 -4.7057 9 14 0.8806 3.2402 -3.9909 10 1 1.5847 4.5472 -3.9578 11 1 0.2436 3.0544 -5.3193 12 1 -0.1620 3.2128 -2.9338 13 6 1.5291 2.1169 1.1755 14 6 1.9345 1.3698 2.4491 15 6 1.4739 2.1678 3.6711 16 7 2.0893 3.5009 3.6472 17 6 1.7802 4.2456 4.8751 18 6 2.3173 3.4789 6.0854 19 6 2.4374 5.6259 4.8136 20 6 0.2643 4.4073 5.0055 21 6 1.6768 4.2548 2.4565 22 6 2.1434 3.5192 1.1983 23 1 -0.3633 0.5425 0.8729 24 1 -0.3634 0.4847 -0.9062 25 1 -0.3634 -1.0271 0.0333 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.5706 2.0004 -1.3911 29 1 1.9337 3.1246 -1.1748 30 1 2.5512 1.6069 -5.6100 31 1 0.4430 2.1956 1.1295 32 1 3.0183 1.2570 2.4756 33 1 1.4652 0.3861 2.4590 34 1 1.7736 1.6457 4.5798 35 1 0.3887 2.2683 3.6513 36 1 3.3971 3.3637 5.9926 37 1 2.0875 4.0313 6.9965 38 1 1.8494 2.4955 6.1294 39 1 2.0551 6.1722 3.9513 40 1 2.2075 6.1785 5.7246 41 1 3.5172 5.5102 4.7210 42 1 -0.2036 3.4238 5.0494 43 1 0.0348 4.9595 5.9168 44 1 -0.1184 4.9534 4.1433 45 1 0.5906 4.3456 2.4424 46 1 2.1238 5.2486 2.4831 47 1 3.2305 3.4402 1.2050 48 1 1.8235 4.0710 0.3143 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256572891.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:40:58 Heat of formation + Delta-G solvation = 6.870068 kcal Electronic energy + Delta-G solvation = -22446.014845 eV Core-core repulsion = 19535.849352 eV Total energy + Delta-G solvation = -2910.165493 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.96069 -37.73819 -34.43275 -32.46624 -31.17062 -30.21618 -29.21469 -27.49416 -27.34911 -26.59525 -23.63514 -23.08312 -21.78311 -20.47958 -18.91047 -18.49864 -16.85284 -16.30070 -15.06103 -14.89235 -14.68494 -14.45846 -14.23611 -14.16042 -13.98592 -13.58815 -12.98332 -12.78843 -12.47784 -12.43404 -12.21119 -11.99099 -11.84999 -11.84090 -11.75289 -11.38218 -11.35236 -11.16559 -11.00809 -10.76858 -10.73229 -10.61745 -10.41853 -10.12019 -9.94943 -9.76377 -9.54893 -9.17300 -8.51757 -8.17777 -7.22088 -6.01453 -3.97248 3.29322 3.36829 3.38351 3.86293 4.44510 4.65650 4.69107 4.84450 4.98317 5.08880 5.11330 5.30451 5.37462 5.40424 5.45227 5.49983 5.57893 5.64037 5.66819 5.70124 5.73343 5.76328 5.81161 5.85472 5.90236 5.94065 5.96020 6.00765 6.12509 6.16622 6.19857 6.29378 6.38616 6.41046 6.55851 6.63111 6.78788 6.88475 7.03176 7.12825 7.23092 7.25421 7.68551 8.00826 8.17294 8.72887 9.08513 9.61220 11.11947 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.026613 B = 0.004908 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.875676 B = 5703.067000 C = 6208.130250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.058 3.942 3 N -0.519 5.519 4 C 0.155 3.845 5 C -0.503 4.503 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.902 5.902 9 Si 0.871 3.129 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.083 3.917 14 C -0.109 4.109 15 C 0.055 3.945 16 N -0.523 5.523 17 C 0.100 3.900 18 C -0.139 4.139 19 C -0.141 4.141 20 C -0.181 4.181 21 C 0.054 3.946 22 C -0.110 4.110 23 H 0.044 0.956 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.086 0.914 27 H 0.057 0.943 28 H -0.008 1.008 29 H 0.026 0.974 30 H 0.262 0.738 31 H 0.027 0.973 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.029 0.971 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.029 0.971 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.482 5.147 20.336 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.070 4.070 3 N -0.242 5.242 4 C 0.029 3.971 5 C -0.542 4.542 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.542 5.542 9 Si 0.698 3.302 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.027 4.027 14 C -0.147 4.147 15 C -0.073 4.073 16 N -0.248 5.248 17 C 0.011 3.989 18 C -0.196 4.196 19 C -0.199 4.199 20 C -0.240 4.240 21 C -0.074 4.074 22 C -0.148 4.148 23 H 0.063 0.937 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.076 0.924 28 H 0.009 0.991 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.047 0.953 46 H 0.095 0.905 47 H 0.098 0.902 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.431 5.078 20.122 21.035 hybrid contribution -2.572 0.897 -0.417 2.755 sum -6.002 5.975 19.705 21.448 Atomic orbital electron populations 1.22391 0.99778 1.00948 1.01524 1.22039 0.91691 0.91297 1.02021 1.62213 1.58534 1.01565 1.01919 1.20271 0.94276 0.94765 0.87799 1.21053 1.24156 1.20169 0.88781 0.90187 1.24887 0.95901 0.96397 0.96132 1.69900 1.42890 1.42444 0.98923 0.86928 0.82330 0.83285 0.77630 1.20168 1.21302 1.19341 1.21586 0.95891 0.93787 0.91390 1.21677 1.02685 0.97623 0.92686 1.22163 0.96215 0.89892 0.99076 1.62183 1.58836 1.02594 1.01141 1.21053 0.92933 0.94181 0.90747 1.21888 1.01921 0.99795 0.96019 1.21927 1.01513 0.94981 1.01456 1.22503 0.97518 1.01993 1.02003 1.22205 0.97626 0.97517 0.90089 1.21687 1.02451 0.94998 0.95676 0.93748 0.92056 0.93254 0.89526 0.92417 0.99074 0.95616 0.92781 0.95505 0.90355 0.91760 0.90725 0.95247 0.91702 0.92583 0.92548 0.92378 0.92546 0.91652 0.92439 0.92362 0.92459 0.95296 0.90496 0.90187 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.28 9.24 37.16 0.34 -2.93 16 2 C 0.06 1.11 5.40 -3.82 -0.02 1.08 16 3 N -0.52 -10.77 4.57 -227.93 -1.04 -11.81 16 4 C 0.16 3.74 3.45 -4.97 -0.02 3.72 16 5 C -0.50 -14.27 8.91 -34.44 -0.31 -14.58 16 6 H 0.08 2.48 7.50 -52.49 -0.39 2.09 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 9 Si 0.87 21.63 27.55 -169.99 -4.68 16.95 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.27 -6.45 6.43 56.52 0.36 -6.09 16 13 C 0.08 1.42 1.46 -67.59 -0.10 1.32 16 14 C -0.11 -1.58 4.93 -26.65 -0.13 -1.71 16 15 C 0.05 0.68 4.64 -3.83 -0.02 0.66 16 16 N -0.52 -6.49 4.47 -219.02 -0.98 -7.47 16 17 C 0.10 1.02 0.71 -131.60 -0.09 0.93 16 18 C -0.14 -1.25 8.25 37.16 0.31 -0.95 16 19 C -0.14 -1.33 8.12 37.16 0.30 -1.03 16 20 C -0.18 -1.75 7.79 37.16 0.29 -1.46 16 21 C 0.05 0.72 4.67 -3.83 -0.02 0.70 16 22 C -0.11 -1.81 5.10 -26.65 -0.14 -1.94 16 23 H 0.04 0.72 6.38 -51.93 -0.33 0.38 16 24 H 0.06 1.21 6.49 -51.93 -0.34 0.88 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.09 1.89 6.79 -51.93 -0.35 1.53 16 27 H 0.06 0.97 6.36 -51.93 -0.33 0.64 16 28 H -0.01 -0.21 5.02 -51.93 -0.26 -0.47 16 29 H 0.03 0.63 5.53 -51.93 -0.29 0.34 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.03 0.48 6.48 -51.93 -0.34 0.15 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 0.90 6.52 -51.93 -0.34 0.56 16 34 H 0.07 0.83 6.01 -51.93 -0.31 0.52 16 35 H 0.03 0.37 6.63 -51.92 -0.34 0.02 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.50 6.28 -51.93 -0.33 0.18 16 39 H 0.06 0.56 6.22 -51.93 -0.32 0.24 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.57 6.54 -51.93 -0.34 0.23 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.59 6.63 -51.93 -0.34 0.25 16 45 H 0.03 0.39 6.71 -51.93 -0.35 0.04 16 46 H 0.08 0.95 5.90 -51.93 -0.31 0.65 16 47 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 48 H 0.07 1.20 6.35 -51.93 -0.33 0.87 16 LS Contribution 337.10 15.07 5.08 5.08 Total: -1.00 -29.65 337.10 -9.04 -38.69 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -8.50 Total: -0.14 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 0.30 Total: -14.31 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -1.25 Total: -46.27 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.68 Total: 16.95 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.65 -9.04 -38.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256572891.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.558 kcal (2) G-P(sol) polarization free energy of solvation -29.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds