Wall clock time and date at job start Mon Mar 30 2020 19:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46904 * 109.46997 * 2 1 4 4 C 1.46896 * 110.99995 * 295.04260 * 3 2 1 5 5 C 1.50700 * 109.47262 * 294.29057 * 4 3 2 6 6 H 1.08003 * 119.99926 * 356.27172 * 5 4 3 7 7 C 1.37881 * 120.00280 * 176.27308 * 5 4 3 8 8 N 1.31511 * 120.00317 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99631 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47422 * 90.00203 * 9 7 5 11 11 H 1.48509 * 109.47035 * 210.00248 * 9 7 5 12 12 H 1.48500 * 109.47530 * 329.99842 * 9 7 5 13 13 C 1.46894 * 110.99965 * 58.99853 * 3 2 1 14 14 C 1.53119 * 109.52625 * 56.04481 * 13 3 2 15 15 C 1.53036 * 109.27994 * 177.61825 * 14 13 3 16 16 N 1.46837 * 109.51652 * 300.82478 * 15 14 13 17 17 C 1.46900 * 111.00170 * 185.83199 * 16 15 14 18 18 C 1.52997 * 109.47462 * 170.00136 * 17 16 15 19 19 C 1.53001 * 109.47482 * 174.99995 * 18 17 16 20 20 C 1.52996 * 109.47402 * 295.00464 * 18 17 16 21 21 C 1.46835 * 111.20896 * 61.75004 * 16 15 14 22 22 C 1.53037 * 109.51251 * 298.24889 * 21 16 15 23 23 H 1.08999 * 109.47195 * 301.82358 * 1 2 3 24 24 H 1.09000 * 109.46936 * 61.81691 * 1 2 3 25 25 H 1.08997 * 109.47394 * 181.82273 * 1 2 3 26 26 H 1.08998 * 109.47183 * 239.99941 * 2 1 3 27 27 H 1.09002 * 109.46940 * 119.99854 * 2 1 3 28 28 H 1.09005 * 109.47144 * 54.28887 * 4 3 2 29 29 H 1.08997 * 109.47166 * 174.28993 * 4 3 2 30 30 H 0.97001 * 120.00094 * 180.02562 * 8 7 5 31 31 H 1.08994 * 109.52617 * 295.91443 * 13 3 2 32 32 H 1.09003 * 109.50066 * 57.68026 * 14 13 3 33 33 H 1.08995 * 109.50151 * 297.56457 * 14 13 3 34 34 H 1.09002 * 109.46009 * 60.83965 * 15 14 13 35 35 H 1.08998 * 109.46051 * 180.81387 * 15 14 13 36 36 H 1.09002 * 109.47447 * 290.00697 * 17 16 15 37 37 H 1.08997 * 109.46781 * 50.00131 * 17 16 15 38 38 H 1.09004 * 109.46768 * 55.00067 * 18 17 16 39 39 H 1.09003 * 109.46555 * 60.00115 * 19 18 17 40 40 H 1.08997 * 109.47008 * 180.02562 * 19 18 17 41 41 H 1.09005 * 109.47238 * 300.00512 * 19 18 17 42 42 H 1.09003 * 109.46976 * 300.00094 * 20 18 17 43 43 H 1.08998 * 109.47196 * 59.99465 * 20 18 17 44 44 H 1.08997 * 109.47570 * 179.97438 * 20 18 17 45 45 H 1.08995 * 109.46389 * 178.23430 * 21 16 15 46 46 H 1.09000 * 109.45494 * 58.25443 * 21 16 15 47 47 H 1.08997 * 109.50246 * 299.23250 * 22 21 16 48 48 H 1.09004 * 109.49838 * 179.11903 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6478 2.0748 -1.2425 5 6 2.3614 1.4348 -2.4053 6 1 3.0705 0.6388 -2.2319 7 6 2.1091 1.8653 -3.6907 8 7 2.7314 1.3064 -4.7055 9 14 0.8821 3.2416 -3.9906 10 1 1.5861 4.5486 -3.9566 11 1 0.2458 3.0565 -5.3196 12 1 -0.1612 3.2136 -2.9342 13 6 1.5292 2.1168 1.1755 14 6 1.9346 1.3698 2.4492 15 6 1.4728 2.1670 3.6711 16 7 2.0870 3.5006 3.6476 17 6 1.7766 4.2449 4.8755 18 6 2.6264 5.5160 4.9300 19 6 2.2152 6.3528 6.1431 20 6 4.1039 5.1371 5.0489 21 6 1.6744 4.2546 2.4572 22 6 2.1422 3.5197 1.1990 23 1 -0.3633 0.5419 0.8732 24 1 -0.3633 0.4854 -0.9058 25 1 -0.3634 -1.0271 0.0327 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.5706 1.9998 -1.3913 29 1 1.9330 3.1247 -1.1745 30 1 2.5541 1.6096 -5.6097 31 1 0.4430 2.1947 1.1290 32 1 3.0185 1.2580 2.4760 33 1 1.4663 0.3856 2.4585 34 1 0.3875 2.2666 3.6508 35 1 1.7726 1.6450 4.5798 36 1 0.7202 4.5136 4.8803 37 1 1.9972 3.6229 5.7429 38 1 2.4721 6.0955 4.0197 39 1 2.3695 5.7733 7.0533 40 1 2.8203 7.2586 6.1816 41 1 1.1625 6.6228 6.0583 42 1 4.2582 4.5575 5.9592 43 1 4.3968 4.5409 4.1847 44 1 4.7094 6.0426 5.0873 45 1 2.1205 5.2487 2.4842 46 1 0.5881 4.3442 2.4427 47 1 3.2294 3.4418 1.2062 48 1 1.8222 4.0715 0.3151 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258014223.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:41:15 Heat of formation + Delta-G solvation = -4.461788 kcal Electronic energy + Delta-G solvation = -22035.321632 eV Core-core repulsion = 19124.664753 eV Total energy + Delta-G solvation = -2910.656879 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.50829 -37.43883 -35.13820 -32.57634 -31.54779 -30.80143 -29.27654 -27.21345 -27.12987 -25.27507 -23.71602 -22.52996 -22.03678 -20.20743 -19.72109 -18.61260 -16.85901 -16.14154 -15.36993 -15.03167 -14.84421 -14.62120 -14.32727 -14.12031 -13.70270 -13.30768 -13.28139 -12.72868 -12.53627 -12.38593 -12.32775 -12.19717 -12.04277 -11.77591 -11.59506 -11.34164 -11.05167 -11.00119 -10.91838 -10.84991 -10.69556 -10.65967 -10.43717 -10.13154 -9.96414 -9.76731 -9.59710 -9.17891 -8.52220 -8.24378 -7.23077 -6.01805 -3.97709 3.29094 3.36638 3.38120 3.89716 4.44161 4.64381 4.71500 4.84237 4.99210 5.09859 5.13711 5.29057 5.31037 5.42920 5.44257 5.50239 5.54578 5.56353 5.66871 5.71706 5.77112 5.79602 5.85209 5.89579 5.91187 5.94073 5.96494 6.00603 6.11953 6.21508 6.25872 6.33428 6.38244 6.39743 6.54600 6.61743 6.76932 6.87397 7.02444 7.11235 7.17935 7.19360 7.67929 7.99933 8.16331 8.72286 9.08088 9.60781 11.11572 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.023854 B = 0.004601 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.545393 B = 6083.778887 C = 6685.338302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.058 3.942 3 N -0.520 5.520 4 C 0.155 3.845 5 C -0.503 4.503 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.902 5.902 9 Si 0.871 3.129 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.082 3.918 14 C -0.109 4.109 15 C 0.061 3.939 16 N -0.533 5.533 17 C 0.060 3.940 18 C -0.096 4.096 19 C -0.146 4.146 20 C -0.138 4.138 21 C 0.057 3.943 22 C -0.110 4.110 23 H 0.044 0.956 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.087 0.913 27 H 0.058 0.942 28 H -0.008 1.008 29 H 0.026 0.974 30 H 0.262 0.738 31 H 0.027 0.973 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.026 0.974 35 H 0.071 0.929 36 H 0.028 0.972 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.045 0.955 45 H 0.075 0.925 46 H 0.026 0.974 47 H 0.080 0.920 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.469 5.919 20.199 21.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.070 4.070 3 N -0.242 5.242 4 C 0.029 3.971 5 C -0.542 4.542 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.698 3.302 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.027 4.027 14 C -0.147 4.147 15 C -0.068 4.068 16 N -0.258 5.258 17 C -0.068 4.068 18 C -0.114 4.114 19 C -0.204 4.204 20 C -0.195 4.195 21 C -0.071 4.071 22 C -0.148 4.148 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.105 0.895 27 H 0.076 0.924 28 H 0.009 0.991 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.094 0.906 46 H 0.044 0.956 47 H 0.099 0.901 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.429 5.841 19.985 20.963 hybrid contribution -2.550 0.907 -0.372 2.732 sum -4.979 6.747 19.613 21.331 Atomic orbital electron populations 1.22390 0.99764 1.00964 1.01528 1.22041 0.91702 0.91268 1.02035 1.62201 1.58553 1.01579 1.01911 1.20271 0.94296 0.94763 0.87785 1.21049 1.24162 1.20181 0.88781 0.90179 1.24887 0.95906 0.96409 0.96133 1.69893 1.42888 1.42429 0.98939 0.86929 0.82323 0.83277 0.77637 1.20163 1.21297 1.19340 1.21585 0.95932 0.93777 0.91406 1.21671 1.02735 0.97644 0.92610 1.22062 0.95965 0.89679 0.99059 1.61920 1.59305 1.02777 1.01757 1.22152 0.96801 0.94988 0.92842 1.21157 0.96261 0.95501 0.98510 1.21826 1.00935 0.99716 0.97959 1.21713 0.94582 1.00746 1.02469 1.22162 0.97362 0.97380 0.90226 1.21679 1.02468 0.94990 0.95662 0.93748 0.92049 0.93239 0.89510 0.92408 0.99056 0.95612 0.92768 0.95471 0.90277 0.91673 0.95567 0.91100 0.95392 0.91062 0.91084 0.92775 0.92592 0.93053 0.93319 0.91122 0.93626 0.90649 0.95577 0.90140 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.26 9.24 37.16 0.34 -2.92 16 2 C 0.06 1.10 5.40 -3.82 -0.02 1.08 16 3 N -0.52 -10.72 4.58 -227.94 -1.04 -11.77 16 4 C 0.16 3.73 3.45 -4.98 -0.02 3.71 16 5 C -0.50 -14.24 8.92 -34.44 -0.31 -14.55 16 6 H 0.08 2.48 7.50 -52.48 -0.39 2.08 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 9 Si 0.87 21.59 27.54 -169.99 -4.68 16.91 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.44 6.44 56.52 0.36 -6.08 16 13 C 0.08 1.40 1.46 -67.59 -0.10 1.30 16 14 C -0.11 -1.56 4.93 -26.65 -0.13 -1.69 16 15 C 0.06 0.75 5.46 -3.84 -0.02 0.72 16 16 N -0.53 -6.57 4.11 -234.69 -0.96 -7.54 16 17 C 0.06 0.62 4.35 -3.83 -0.02 0.60 16 18 C -0.10 -0.90 2.84 -90.62 -0.26 -1.16 16 19 C -0.15 -1.15 9.19 37.16 0.34 -0.81 16 20 C -0.14 -1.34 9.08 37.16 0.34 -1.00 16 21 C 0.06 0.76 5.30 -3.84 -0.02 0.74 16 22 C -0.11 -1.79 5.10 -26.65 -0.14 -1.93 16 23 H 0.04 0.71 6.38 -51.93 -0.33 0.38 16 24 H 0.06 1.21 6.49 -51.93 -0.34 0.87 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.09 1.88 6.79 -51.93 -0.35 1.53 16 27 H 0.06 0.97 6.35 -51.93 -0.33 0.64 16 28 H -0.01 -0.20 5.02 -51.93 -0.26 -0.46 16 29 H 0.03 0.63 5.53 -51.93 -0.29 0.34 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 31 H 0.03 0.49 6.48 -51.93 -0.34 0.15 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.06 0.90 6.52 -51.93 -0.34 0.56 16 34 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.77 8.02 -51.93 -0.42 0.36 16 36 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 37 H 0.07 0.69 7.99 -51.93 -0.41 0.27 16 38 H 0.07 0.72 6.22 -51.93 -0.32 0.40 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.81 7.75 -51.93 -0.40 0.41 16 44 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.93 6.12 -51.93 -0.32 0.61 16 46 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 48 H 0.07 1.20 6.36 -51.93 -0.33 0.87 16 LS Contribution 348.37 15.07 5.25 5.25 Total: -1.00 -29.45 348.37 -9.76 -39.21 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -8.99 Total: -1.07 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -0.10 Total: -14.04 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -1.23 Total: -46.26 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.68 Total: 16.91 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.45 -9.76 -39.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258014223.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.745 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds