Wall clock time and date at job start Mon Mar 30 2020 19:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46904 * 109.46997 * 2 1 4 4 C 1.46896 * 110.99995 * 295.04260 * 3 2 1 5 5 C 1.50700 * 109.47262 * 294.29057 * 4 3 2 6 6 H 1.08003 * 119.99926 * 356.27172 * 5 4 3 7 7 C 1.37881 * 120.00280 * 176.27308 * 5 4 3 8 8 N 1.31511 * 120.00317 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99631 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47422 * 90.00203 * 9 7 5 11 11 H 1.48509 * 109.47035 * 210.00248 * 9 7 5 12 12 H 1.48500 * 109.47530 * 329.99842 * 9 7 5 13 13 C 1.46894 * 110.99965 * 58.99853 * 3 2 1 14 14 C 1.53119 * 109.52625 * 56.04481 * 13 3 2 15 15 C 1.53036 * 109.27994 * 177.61825 * 14 13 3 16 16 N 1.46837 * 109.51652 * 300.82478 * 15 14 13 17 17 C 1.46900 * 111.00170 * 185.83199 * 16 15 14 18 18 C 1.52997 * 109.47462 * 170.00136 * 17 16 15 19 19 C 1.53001 * 109.47482 * 174.99995 * 18 17 16 20 20 C 1.52996 * 109.47402 * 295.00464 * 18 17 16 21 21 C 1.46835 * 111.20896 * 61.75004 * 16 15 14 22 22 C 1.53037 * 109.51251 * 298.24889 * 21 16 15 23 23 H 1.08999 * 109.47195 * 301.82358 * 1 2 3 24 24 H 1.09000 * 109.46936 * 61.81691 * 1 2 3 25 25 H 1.08997 * 109.47394 * 181.82273 * 1 2 3 26 26 H 1.08998 * 109.47183 * 239.99941 * 2 1 3 27 27 H 1.09002 * 109.46940 * 119.99854 * 2 1 3 28 28 H 1.09005 * 109.47144 * 54.28887 * 4 3 2 29 29 H 1.08997 * 109.47166 * 174.28993 * 4 3 2 30 30 H 0.97001 * 120.00094 * 180.02562 * 8 7 5 31 31 H 1.08994 * 109.52617 * 295.91443 * 13 3 2 32 32 H 1.09003 * 109.50066 * 57.68026 * 14 13 3 33 33 H 1.08995 * 109.50151 * 297.56457 * 14 13 3 34 34 H 1.09002 * 109.46009 * 60.83965 * 15 14 13 35 35 H 1.08998 * 109.46051 * 180.81387 * 15 14 13 36 36 H 1.09002 * 109.47447 * 290.00697 * 17 16 15 37 37 H 1.08997 * 109.46781 * 50.00131 * 17 16 15 38 38 H 1.09004 * 109.46768 * 55.00067 * 18 17 16 39 39 H 1.09003 * 109.46555 * 60.00115 * 19 18 17 40 40 H 1.08997 * 109.47008 * 180.02562 * 19 18 17 41 41 H 1.09005 * 109.47238 * 300.00512 * 19 18 17 42 42 H 1.09003 * 109.46976 * 300.00094 * 20 18 17 43 43 H 1.08998 * 109.47196 * 59.99465 * 20 18 17 44 44 H 1.08997 * 109.47570 * 179.97438 * 20 18 17 45 45 H 1.08995 * 109.46389 * 178.23430 * 21 16 15 46 46 H 1.09000 * 109.45494 * 58.25443 * 21 16 15 47 47 H 1.08997 * 109.50246 * 299.23250 * 22 21 16 48 48 H 1.09004 * 109.49838 * 179.11903 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6478 2.0748 -1.2425 5 6 2.3614 1.4348 -2.4053 6 1 3.0705 0.6388 -2.2319 7 6 2.1091 1.8653 -3.6907 8 7 2.7314 1.3064 -4.7055 9 14 0.8821 3.2416 -3.9906 10 1 1.5861 4.5486 -3.9566 11 1 0.2458 3.0565 -5.3196 12 1 -0.1612 3.2136 -2.9342 13 6 1.5292 2.1168 1.1755 14 6 1.9346 1.3698 2.4492 15 6 1.4728 2.1670 3.6711 16 7 2.0870 3.5006 3.6476 17 6 1.7766 4.2449 4.8755 18 6 2.6264 5.5160 4.9300 19 6 2.2152 6.3528 6.1431 20 6 4.1039 5.1371 5.0489 21 6 1.6744 4.2546 2.4572 22 6 2.1422 3.5197 1.1990 23 1 -0.3633 0.5419 0.8732 24 1 -0.3633 0.4854 -0.9058 25 1 -0.3634 -1.0271 0.0327 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.5706 1.9998 -1.3913 29 1 1.9330 3.1247 -1.1745 30 1 2.5541 1.6096 -5.6097 31 1 0.4430 2.1947 1.1290 32 1 3.0185 1.2580 2.4760 33 1 1.4663 0.3856 2.4585 34 1 0.3875 2.2666 3.6508 35 1 1.7726 1.6450 4.5798 36 1 0.7202 4.5136 4.8803 37 1 1.9972 3.6229 5.7429 38 1 2.4721 6.0955 4.0197 39 1 2.3695 5.7733 7.0533 40 1 2.8203 7.2586 6.1816 41 1 1.1625 6.6228 6.0583 42 1 4.2582 4.5575 5.9592 43 1 4.3968 4.5409 4.1847 44 1 4.7094 6.0426 5.0873 45 1 2.1205 5.2487 2.4842 46 1 0.5881 4.3442 2.4427 47 1 3.2294 3.4418 1.2062 48 1 1.8222 4.0715 0.3151 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258014223.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:41:14 Heat of formation + Delta-G solvation = -23.217300 kcal Electronic energy + Delta-G solvation = -22036.134932 eV Core-core repulsion = 19124.664753 eV Total energy + Delta-G solvation = -2911.470179 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.70954 -38.69227 -36.16250 -34.67898 -32.76755 -32.08138 -30.87795 -28.77282 -27.88341 -26.39888 -25.16731 -23.79054 -23.50468 -21.56563 -20.55522 -20.05197 -18.93666 -17.34757 -16.57290 -16.51524 -16.18168 -15.80320 -15.76617 -15.37137 -14.86007 -14.64295 -14.53735 -14.28477 -13.76177 -13.60501 -13.51803 -13.49289 -13.10860 -13.02499 -12.86129 -12.63729 -12.56366 -12.28013 -12.15444 -12.08488 -11.88866 -11.80070 -11.74797 -11.52298 -11.42724 -11.37511 -11.16528 -10.88627 -10.72697 -9.18125 -8.88089 -8.27102 -6.28448 1.32202 1.33176 1.43373 2.33535 2.96351 3.06571 3.23263 3.79026 3.94640 4.00367 4.09898 4.17126 4.31353 4.32271 4.34516 4.41694 4.49104 4.50654 4.60840 4.66758 4.68754 4.75793 4.78019 4.82034 4.85514 4.89961 4.95146 5.00466 5.02847 5.11208 5.12008 5.15958 5.20258 5.26942 5.30820 5.33507 5.40656 5.50167 5.51698 5.59217 5.62172 6.06021 6.18807 6.26226 6.47745 6.74027 6.78651 7.34568 8.89821 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.023854 B = 0.004601 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.545393 B = 6083.778887 C = 6685.338302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.058 3.942 3 N -0.537 5.537 4 C 0.169 3.831 5 C -0.508 4.508 6 H 0.036 0.964 7 C 0.008 3.992 8 N -0.949 5.949 9 Si 0.941 3.059 10 H -0.265 1.265 11 H -0.282 1.282 12 H -0.254 1.254 13 C 0.083 3.917 14 C -0.101 4.101 15 C 0.065 3.935 16 N -0.542 5.542 17 C 0.062 3.938 18 C -0.095 4.095 19 C -0.142 4.142 20 C -0.134 4.134 21 C 0.067 3.933 22 C -0.108 4.108 23 H 0.062 0.938 24 H 0.033 0.967 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.085 0.915 28 H -0.010 1.010 29 H 0.027 0.973 30 H 0.265 0.735 31 H 0.027 0.973 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.032 0.968 35 H 0.091 0.909 36 H 0.032 0.968 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.050 0.950 45 H 0.084 0.916 46 H 0.029 0.971 47 H 0.062 0.938 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.155 7.187 22.863 24.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.070 4.070 3 N -0.260 5.260 4 C 0.042 3.958 5 C -0.546 4.546 6 H 0.055 0.945 7 C -0.188 4.188 8 N -0.591 5.591 9 Si 0.765 3.235 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.178 1.178 13 C -0.025 4.025 14 C -0.139 4.139 15 C -0.063 4.063 16 N -0.267 5.267 17 C -0.065 4.065 18 C -0.113 4.113 19 C -0.200 4.200 20 C -0.192 4.192 21 C -0.061 4.061 22 C -0.146 4.146 23 H 0.081 0.919 24 H 0.052 0.948 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.007 0.993 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.109 0.891 36 H 0.051 0.949 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.102 0.898 46 H 0.048 0.952 47 H 0.081 0.919 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.115 7.107 22.684 24.125 hybrid contribution -1.920 0.424 -1.162 2.284 sum -6.035 7.531 21.522 23.587 Atomic orbital electron populations 1.22276 0.98024 1.02430 1.00887 1.22008 0.93136 0.90343 1.01498 1.62109 1.59591 1.02423 1.01865 1.19969 0.93283 0.94562 0.87999 1.21268 1.23464 1.19148 0.90755 0.94545 1.25788 0.98061 0.99250 0.95746 1.70049 1.44962 1.44486 0.99562 0.85809 0.79939 0.79872 0.77919 1.18970 1.20754 1.17758 1.21689 0.95792 0.94140 0.90927 1.21602 1.01946 0.98202 0.92130 1.22036 0.96197 0.89476 0.98564 1.61898 1.59612 1.03023 1.02176 1.22199 0.97162 0.95167 0.91964 1.21149 0.95849 0.95354 0.98982 1.21781 1.01237 0.99653 0.97317 1.21666 0.95020 1.00736 1.01742 1.22008 0.97420 0.97411 0.89289 1.21623 1.01282 0.94866 0.96853 0.91890 0.94801 0.90951 0.93285 0.89686 0.99273 0.95514 0.92556 0.95468 0.91627 0.90710 0.94992 0.89060 0.94929 0.89970 0.91965 0.92049 0.92174 0.92631 0.92688 0.93239 0.93099 0.89754 0.95231 0.91894 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.93 9.24 71.98 0.66 -5.26 16 2 C 0.06 2.21 5.40 86.30 0.47 2.68 16 3 N -0.54 -22.32 4.58 -875.07 -4.00 -26.32 16 4 C 0.17 8.22 3.45 85.56 0.29 8.51 16 5 C -0.51 -29.87 8.92 25.60 0.23 -29.64 16 6 H 0.04 2.40 7.50 -2.91 -0.02 2.37 16 7 C 0.01 0.50 5.47 84.66 0.46 0.96 16 8 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 9 Si 0.94 44.90 27.54 68.60 1.89 46.79 16 10 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.25 -11.40 6.44 99.48 0.64 -10.76 16 13 C 0.08 2.74 1.46 45.00 0.07 2.80 16 14 C -0.10 -2.69 4.93 30.65 0.15 -2.54 16 15 C 0.07 1.41 5.46 86.33 0.47 1.88 16 16 N -0.54 -12.07 4.11 -896.44 -3.68 -15.76 16 17 C 0.06 1.09 4.35 86.30 0.38 1.47 16 18 C -0.09 -1.56 2.84 -10.80 -0.03 -1.59 16 19 C -0.14 -1.82 9.19 71.98 0.66 -1.16 16 20 C -0.13 -2.37 9.08 71.98 0.65 -1.72 16 21 C 0.07 1.66 5.30 86.33 0.46 2.12 16 22 C -0.11 -3.46 5.10 30.65 0.16 -3.30 16 23 H 0.06 1.86 6.38 -2.39 -0.02 1.85 16 24 H 0.03 1.30 6.49 -2.39 -0.02 1.29 16 25 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.05 2.22 6.79 -2.39 -0.02 2.20 16 27 H 0.08 2.75 6.35 -2.39 -0.02 2.73 16 28 H -0.01 -0.50 5.02 -2.38 -0.01 -0.52 16 29 H 0.03 1.30 5.53 -2.39 -0.01 1.29 16 30 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 31 H 0.03 0.92 6.48 -2.39 -0.02 0.90 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 1.85 6.52 -2.39 -0.02 1.83 16 34 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.09 1.64 8.02 -2.39 -0.02 1.62 16 36 H 0.03 0.56 8.12 -2.39 -0.02 0.54 16 37 H 0.08 1.29 7.99 -2.39 -0.02 1.27 16 38 H 0.06 1.14 6.22 -2.38 -0.01 1.13 16 39 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 40 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.05 1.08 7.75 -2.39 -0.02 1.06 16 44 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.08 1.94 6.12 -2.39 -0.01 1.93 16 46 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.05 1.83 6.36 -2.39 -0.02 1.81 16 Total: -1.00 -65.59 348.37 0.41 -65.18 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.83 Total: 14.89 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: 5.08 Total: -24.79 kcal Atomic # 7 Polarization: -94.69 SS G_CDS: -7.39 Total: -102.07 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.89 Total: 46.79 kcal Total: -65.59 0.41 -65.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258014223.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.964 kcal (2) G-P(sol) polarization free energy of solvation -65.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds