Wall clock time and date at job start Mon Mar 30 2020 19:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47492 * 2 1 4 4 C 1.52997 * 109.47198 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46883 * 179.97438 * 4 3 2 6 6 C 1.36935 * 119.99930 * 270.00201 * 5 4 3 7 7 H 1.08009 * 120.00240 * 141.88075 * 6 5 4 8 8 C 1.38815 * 120.00392 * 321.87599 * 6 5 4 9 9 N 1.31624 * 120.00194 * 156.84697 * 8 6 5 10 10 Si 1.86801 * 119.99814 * 336.85463 * 8 6 5 11 11 H 1.48499 * 109.47114 * 95.38733 * 10 8 6 12 12 H 1.48498 * 109.46867 * 215.38681 * 10 8 6 13 13 H 1.48494 * 109.47148 * 335.38771 * 10 8 6 14 14 C 1.46495 * 120.00043 * 90.00527 * 5 4 3 15 15 C 1.53119 * 109.52410 * 245.11751 * 14 5 4 16 16 C 1.53035 * 109.28307 * 182.37514 * 15 14 5 17 17 N 1.46853 * 109.51245 * 59.18323 * 16 15 14 18 18 C 1.46896 * 110.99810 * 174.15803 * 17 16 15 19 19 C 1.53005 * 109.47050 * 169.99702 * 18 17 16 20 20 C 1.52995 * 109.47184 * 179.97438 * 19 18 17 21 21 C 1.46846 * 111.19668 * 298.24303 * 17 16 15 22 22 C 1.53036 * 109.51804 * 61.75968 * 21 17 16 23 23 H 1.09002 * 109.46422 * 299.99692 * 1 2 3 24 24 H 1.08995 * 109.46911 * 59.99486 * 1 2 3 25 25 H 1.09001 * 109.46911 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46646 * 239.99560 * 2 1 3 27 27 H 1.09006 * 109.46993 * 119.99992 * 2 1 3 28 28 H 1.09005 * 109.46848 * 59.99939 * 3 2 1 29 29 H 1.08998 * 109.46977 * 300.00334 * 3 2 1 30 30 H 1.08999 * 109.46848 * 60.00695 * 4 3 2 31 31 H 1.08992 * 109.47391 * 299.99786 * 4 3 2 32 32 H 0.96999 * 119.99995 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.52338 * 5.24318 * 14 5 4 34 34 H 1.09001 * 109.50420 * 62.43027 * 15 14 5 35 35 H 1.09008 * 109.50177 * 302.31681 * 15 14 5 36 36 H 1.08994 * 109.46516 * 179.19052 * 16 15 14 37 37 H 1.09001 * 109.46165 * 299.17562 * 16 15 14 38 38 H 1.08998 * 109.47583 * 289.99801 * 18 17 16 39 39 H 1.08996 * 109.47489 * 50.00351 * 18 17 16 40 40 H 1.08997 * 109.47503 * 300.00269 * 19 18 17 41 41 H 1.09008 * 109.46845 * 60.00143 * 19 18 17 42 42 H 1.08994 * 109.47624 * 60.00138 * 20 19 18 43 43 H 1.09005 * 109.47315 * 180.02562 * 20 19 18 44 44 H 1.09009 * 109.47222 * 299.99838 * 20 19 18 45 45 H 1.09005 * 109.47386 * 301.74542 * 21 17 16 46 46 H 1.09001 * 109.45540 * 181.76291 * 21 17 16 47 47 H 1.08995 * 109.50943 * 180.87713 * 22 21 17 48 48 H 1.09006 * 109.50282 * 60.74990 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.2872 3.4684 -1.1862 7 1 4.0453 4.5162 -1.2867 8 6 4.8300 2.7754 -2.2595 9 7 4.6406 3.2104 -3.4873 10 14 5.8291 1.2255 -1.9615 11 1 4.9518 0.0359 -2.1045 12 1 6.9319 1.1492 -2.9530 13 1 6.3977 1.2591 -0.5902 14 6 4.3022 3.5149 1.2684 15 6 3.3284 4.6884 1.4070 16 6 3.6267 5.4420 2.7050 17 7 5.0110 5.9316 2.6810 18 6 5.2905 6.7776 3.8489 19 6 6.7919 7.0626 3.9246 20 6 7.0830 7.9442 5.1406 21 6 5.9661 4.8194 2.5964 22 6 5.7377 4.0471 1.2951 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6768 1.9563 -0.8899 30 1 3.9337 0.9285 -0.8892 31 1 3.9331 0.9287 0.8908 32 1 5.0196 2.7260 -4.2373 33 1 4.1558 2.8205 2.0957 34 1 2.3058 4.3118 1.4315 35 1 3.4482 5.3627 0.5589 36 1 2.9444 6.2868 2.7996 37 1 3.4936 4.7708 3.5535 38 1 4.7466 7.7175 3.7553 39 1 4.9725 6.2625 4.7552 40 1 7.3359 6.1227 4.0182 41 1 7.1101 7.5778 3.0182 42 1 6.7648 7.4296 6.0472 43 1 8.1525 8.1476 5.1943 44 1 6.5391 8.8842 5.0465 45 1 5.8218 4.1511 3.4453 46 1 6.9829 5.2120 2.6119 47 1 6.4363 3.2124 1.2398 48 1 5.8953 4.7114 0.4452 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258776087.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:41:23 Heat of formation + Delta-G solvation = 2.070332 kcal Electronic energy + Delta-G solvation = -21981.041768 eV Core-core repulsion = 19070.668143 eV Total energy + Delta-G solvation = -2910.373625 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -38.94712 -36.61223 -34.63516 -33.40845 -31.69805 -30.50776 -30.21367 -27.86441 -25.77478 -24.10787 -23.24484 -22.64150 -21.13526 -20.43260 -20.19373 -19.06194 -16.44596 -15.85255 -15.34023 -15.17853 -14.55776 -14.54520 -14.38275 -13.71909 -13.54951 -13.29623 -13.08757 -12.76060 -12.49385 -12.35972 -12.25374 -12.05725 -11.87758 -11.55636 -11.33435 -11.21027 -11.00944 -10.92149 -10.70212 -10.55957 -10.53101 -10.43569 -10.24124 -10.15375 -9.89139 -9.71056 -9.51982 -9.21748 -8.39245 -7.98475 -6.69609 -5.91899 -3.31552 3.35952 3.51318 3.56576 4.16197 4.59537 4.87592 4.91619 5.00244 5.24428 5.34418 5.42335 5.43094 5.48311 5.49621 5.54549 5.62113 5.65139 5.72011 5.74066 5.83537 5.93243 5.96171 5.97352 6.06249 6.17412 6.19077 6.19579 6.25702 6.28254 6.32024 6.33365 6.36011 6.45145 6.57080 6.62891 6.74474 6.78162 6.99302 7.12337 7.17159 7.24003 7.45791 7.47767 8.15704 8.49630 9.10022 9.81345 10.22937 11.23983 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.017781 B = 0.005493 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.364446 B = 5096.561324 C = 6063.760207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C -0.132 4.132 4 C 0.139 3.861 5 N -0.602 5.602 6 C -0.255 4.255 7 H 0.079 0.921 8 C 0.037 3.963 9 N -0.901 5.901 10 Si 0.872 3.128 11 H -0.288 1.288 12 H -0.304 1.304 13 H -0.270 1.270 14 C 0.180 3.820 15 C -0.123 4.123 16 C 0.062 3.938 17 N -0.535 5.535 18 C 0.056 3.944 19 C -0.130 4.130 20 C -0.150 4.150 21 C 0.055 3.945 22 C -0.121 4.121 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.032 0.968 32 H 0.261 0.739 33 H 0.042 0.958 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.023 0.977 38 H 0.070 0.930 39 H 0.026 0.974 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.073 0.927 47 H 0.056 0.944 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.775 1.952 14.773 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.172 4.172 4 C 0.013 3.987 5 N -0.323 5.323 6 C -0.383 4.383 7 H 0.097 0.903 8 C -0.163 4.163 9 N -0.542 5.542 10 Si 0.703 3.297 11 H -0.216 1.216 12 H -0.232 1.232 13 H -0.195 1.195 14 C 0.073 3.927 15 C -0.163 4.163 16 C -0.066 4.066 17 N -0.260 5.260 18 C -0.071 4.071 19 C -0.167 4.167 20 C -0.208 4.208 21 C -0.073 4.073 22 C -0.161 4.161 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.041 0.959 38 H 0.089 0.911 39 H 0.044 0.956 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.040 0.960 46 H 0.091 0.909 47 H 0.075 0.925 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.673 2.217 14.160 14.348 hybrid contribution 0.457 -1.427 0.736 1.670 sum -0.216 0.790 14.896 14.919 Atomic orbital electron populations 1.21749 0.96576 1.00577 1.01594 1.21533 0.95238 0.98477 1.01149 1.22134 0.98641 0.94538 1.01884 1.21188 0.92054 0.86681 0.98754 1.44219 1.75050 1.11080 1.01964 1.18650 1.36095 0.96680 0.86923 0.90320 1.25454 0.98009 0.97583 0.95248 1.69887 1.45308 1.41205 0.97848 0.86998 0.80847 0.84154 0.77729 1.21613 1.23229 1.19506 1.20373 0.92300 0.92083 0.87964 1.22029 0.99266 0.98555 0.96408 1.22087 0.88945 0.97740 0.97857 1.61988 1.03292 1.20983 1.39768 1.22125 0.96230 0.97498 0.91296 1.21707 0.95949 1.00239 0.98853 1.21737 1.01277 0.99808 0.97929 1.22244 0.96062 0.91258 0.97760 1.21963 0.98276 0.99183 0.96643 0.93191 0.92776 0.93604 0.92463 0.92933 0.93192 0.91365 0.93013 0.94913 0.92918 0.93941 0.92423 0.90488 0.91680 0.95882 0.91139 0.95598 0.91640 0.90970 0.93066 0.92724 0.92739 0.96048 0.90868 0.92539 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 37.16 0.37 -1.65 16 2 C -0.13 -2.01 5.93 -26.73 -0.16 -2.17 16 3 C -0.13 -2.51 5.54 -26.73 -0.15 -2.66 16 4 C 0.14 2.99 4.50 -4.04 -0.02 2.97 16 5 N -0.60 -13.89 2.01 -165.53 -0.33 -14.22 16 6 C -0.25 -6.90 8.46 -15.06 -0.13 -7.03 16 7 H 0.08 2.33 7.18 -52.48 -0.38 1.96 16 8 C 0.04 1.06 5.28 -17.43 -0.09 0.96 16 9 N -0.90 -27.39 13.97 55.49 0.78 -26.61 16 10 Si 0.87 22.26 25.13 -169.99 -4.27 17.99 16 11 H -0.29 -7.20 6.66 56.52 0.38 -6.82 16 12 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 13 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.18 3.54 2.70 -67.81 -0.18 3.36 16 15 C -0.12 -2.23 5.45 -26.65 -0.15 -2.38 16 16 C 0.06 0.94 5.43 -3.83 -0.02 0.92 16 17 N -0.54 -8.17 4.81 -234.67 -1.13 -9.30 16 18 C 0.06 0.70 5.27 -3.82 -0.02 0.68 16 19 C -0.13 -1.43 5.18 -26.73 -0.14 -1.57 16 20 C -0.15 -1.33 9.91 37.16 0.37 -0.96 16 21 C 0.05 0.86 4.85 -3.83 -0.02 0.84 16 22 C -0.12 -2.32 5.31 -26.65 -0.14 -2.47 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.05 1.24 3.40 -51.93 -0.18 1.06 16 31 H 0.03 0.65 7.88 -51.93 -0.41 0.24 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.04 0.80 7.77 -51.93 -0.40 0.39 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.61 7.13 -51.92 -0.37 1.24 16 36 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.03 0.31 8.08 -51.93 -0.42 -0.11 16 40 H 0.07 0.73 6.21 -51.93 -0.32 0.41 16 41 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 45 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 1.06 5.81 -51.93 -0.30 0.75 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 48 H 0.08 1.83 7.48 -51.93 -0.39 1.44 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -28.87 358.17 -9.55 -38.42 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -9.51 Total: -0.52 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -0.48 Total: -11.15 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.69 Total: -50.14 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.27 Total: 17.99 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.87 -9.55 -38.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258776087.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.493 kcal (2) G-P(sol) polarization free energy of solvation -28.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds