Wall clock time and date at job start Mon Mar 30 2020 19:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47492 * 2 1 4 4 C 1.52997 * 109.47198 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46883 * 179.97438 * 4 3 2 6 6 C 1.36935 * 119.99930 * 270.00201 * 5 4 3 7 7 H 1.08009 * 120.00240 * 141.88075 * 6 5 4 8 8 C 1.38815 * 120.00392 * 321.87599 * 6 5 4 9 9 N 1.31624 * 120.00194 * 156.84697 * 8 6 5 10 10 Si 1.86801 * 119.99814 * 336.85463 * 8 6 5 11 11 H 1.48499 * 109.47114 * 95.38733 * 10 8 6 12 12 H 1.48498 * 109.46867 * 215.38681 * 10 8 6 13 13 H 1.48494 * 109.47148 * 335.38771 * 10 8 6 14 14 C 1.46495 * 120.00043 * 90.00527 * 5 4 3 15 15 C 1.53119 * 109.52410 * 245.11751 * 14 5 4 16 16 C 1.53035 * 109.28307 * 182.37514 * 15 14 5 17 17 N 1.46853 * 109.51245 * 59.18323 * 16 15 14 18 18 C 1.46896 * 110.99810 * 174.15803 * 17 16 15 19 19 C 1.53005 * 109.47050 * 169.99702 * 18 17 16 20 20 C 1.52995 * 109.47184 * 179.97438 * 19 18 17 21 21 C 1.46846 * 111.19668 * 298.24303 * 17 16 15 22 22 C 1.53036 * 109.51804 * 61.75968 * 21 17 16 23 23 H 1.09002 * 109.46422 * 299.99692 * 1 2 3 24 24 H 1.08995 * 109.46911 * 59.99486 * 1 2 3 25 25 H 1.09001 * 109.46911 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46646 * 239.99560 * 2 1 3 27 27 H 1.09006 * 109.46993 * 119.99992 * 2 1 3 28 28 H 1.09005 * 109.46848 * 59.99939 * 3 2 1 29 29 H 1.08998 * 109.46977 * 300.00334 * 3 2 1 30 30 H 1.08999 * 109.46848 * 60.00695 * 4 3 2 31 31 H 1.08992 * 109.47391 * 299.99786 * 4 3 2 32 32 H 0.96999 * 119.99995 * 180.02562 * 9 8 6 33 33 H 1.09001 * 109.52338 * 5.24318 * 14 5 4 34 34 H 1.09001 * 109.50420 * 62.43027 * 15 14 5 35 35 H 1.09008 * 109.50177 * 302.31681 * 15 14 5 36 36 H 1.08994 * 109.46516 * 179.19052 * 16 15 14 37 37 H 1.09001 * 109.46165 * 299.17562 * 16 15 14 38 38 H 1.08998 * 109.47583 * 289.99801 * 18 17 16 39 39 H 1.08996 * 109.47489 * 50.00351 * 18 17 16 40 40 H 1.08997 * 109.47503 * 300.00269 * 19 18 17 41 41 H 1.09008 * 109.46845 * 60.00143 * 19 18 17 42 42 H 1.08994 * 109.47624 * 60.00138 * 20 19 18 43 43 H 1.09005 * 109.47315 * 180.02562 * 20 19 18 44 44 H 1.09009 * 109.47222 * 299.99838 * 20 19 18 45 45 H 1.09005 * 109.47386 * 301.74542 * 21 17 16 46 46 H 1.09001 * 109.45540 * 181.76291 * 21 17 16 47 47 H 1.08995 * 109.50943 * 180.87713 * 22 21 17 48 48 H 1.09006 * 109.50282 * 60.74990 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.2872 3.4684 -1.1862 7 1 4.0453 4.5162 -1.2867 8 6 4.8300 2.7754 -2.2595 9 7 4.6406 3.2104 -3.4873 10 14 5.8291 1.2255 -1.9615 11 1 4.9518 0.0359 -2.1045 12 1 6.9319 1.1492 -2.9530 13 1 6.3977 1.2591 -0.5902 14 6 4.3022 3.5149 1.2684 15 6 3.3284 4.6884 1.4070 16 6 3.6267 5.4420 2.7050 17 7 5.0110 5.9316 2.6810 18 6 5.2905 6.7776 3.8489 19 6 6.7919 7.0626 3.9246 20 6 7.0830 7.9442 5.1406 21 6 5.9661 4.8194 2.5964 22 6 5.7377 4.0471 1.2951 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6768 1.9563 -0.8899 30 1 3.9337 0.9285 -0.8892 31 1 3.9331 0.9287 0.8908 32 1 5.0196 2.7260 -4.2373 33 1 4.1558 2.8205 2.0957 34 1 2.3058 4.3118 1.4315 35 1 3.4482 5.3627 0.5589 36 1 2.9444 6.2868 2.7996 37 1 3.4936 4.7708 3.5535 38 1 4.7466 7.7175 3.7553 39 1 4.9725 6.2625 4.7552 40 1 7.3359 6.1227 4.0182 41 1 7.1101 7.5778 3.0182 42 1 6.7648 7.4296 6.0472 43 1 8.1525 8.1476 5.1943 44 1 6.5391 8.8842 5.0465 45 1 5.8218 4.1511 3.4453 46 1 6.9829 5.2120 2.6119 47 1 6.4363 3.2124 1.2398 48 1 5.8953 4.7114 0.4452 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258776087.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:41:22 Heat of formation + Delta-G solvation = -14.460251 kcal Electronic energy + Delta-G solvation = -21981.758588 eV Core-core repulsion = 19070.668143 eV Total energy + Delta-G solvation = -2911.090445 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.30643 -38.17092 -35.89383 -34.84355 -33.52291 -31.94527 -31.55563 -29.40382 -27.11230 -25.73125 -24.49825 -24.06148 -22.51942 -21.92156 -21.40573 -20.60040 -18.35184 -17.47891 -16.80993 -16.32850 -16.11574 -15.97684 -15.68061 -15.11126 -14.90009 -14.78495 -14.45454 -14.32822 -14.01458 -13.70470 -13.53541 -13.25183 -13.21845 -12.97800 -12.81344 -12.65736 -12.37273 -12.14139 -12.09603 -12.01852 -11.93068 -11.77917 -11.69336 -11.61725 -11.53786 -11.28365 -11.18817 -10.88073 -10.51454 -9.12657 -8.64185 -8.13797 -5.49082 1.29978 1.40402 1.51123 2.45854 3.02457 3.08217 3.34628 3.95620 4.04243 4.09517 4.13472 4.16955 4.27437 4.29824 4.37765 4.43115 4.47820 4.50515 4.58117 4.64084 4.73742 4.76010 4.76812 4.82336 4.89577 4.91484 4.93669 4.99044 5.01281 5.06075 5.14338 5.20719 5.22989 5.26606 5.33396 5.37355 5.43809 5.47663 5.56101 5.57351 5.65838 6.03492 6.25311 6.26515 6.32753 7.08758 7.73166 8.14653 9.06725 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.017781 B = 0.005493 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.364446 B = 5096.561324 C = 6063.760207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C -0.121 4.121 4 C 0.131 3.869 5 N -0.613 5.613 6 C -0.228 4.228 7 H 0.038 0.962 8 C -0.020 4.020 9 N -0.952 5.952 10 Si 0.934 3.066 11 H -0.278 1.278 12 H -0.314 1.314 13 H -0.259 1.259 14 C 0.174 3.826 15 C -0.114 4.114 16 C 0.070 3.930 17 N -0.557 5.557 18 C 0.059 3.941 19 C -0.128 4.128 20 C -0.145 4.145 21 C 0.066 3.934 22 C -0.116 4.116 23 H 0.061 0.939 24 H 0.042 0.958 25 H 0.066 0.934 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.028 0.972 31 H 0.060 0.940 32 H 0.259 0.741 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.037 0.963 36 H 0.078 0.922 37 H 0.042 0.958 38 H 0.075 0.925 39 H 0.039 0.961 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.039 0.961 46 H 0.084 0.916 47 H 0.048 0.952 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.952 0.869 18.359 18.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C -0.161 4.161 4 C 0.007 3.993 5 N -0.334 5.334 6 C -0.358 4.358 7 H 0.056 0.944 8 C -0.216 4.216 9 N -0.597 5.597 10 Si 0.764 3.236 11 H -0.206 1.206 12 H -0.243 1.243 13 H -0.183 1.183 14 C 0.069 3.931 15 C -0.154 4.154 16 C -0.058 4.058 17 N -0.283 5.283 18 C -0.068 4.068 19 C -0.166 4.166 20 C -0.203 4.203 21 C -0.062 4.062 22 C -0.156 4.156 23 H 0.080 0.920 24 H 0.062 0.938 25 H 0.085 0.915 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.057 0.943 46 H 0.102 0.898 47 H 0.067 0.933 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.859 1.128 17.801 17.858 hybrid contribution 0.454 -0.998 -0.335 1.147 sum -0.405 0.130 17.466 17.471 Atomic orbital electron populations 1.21716 0.94717 1.02045 1.01668 1.21509 0.96895 0.96041 1.01632 1.21972 0.96764 0.96650 1.00733 1.21317 0.93709 0.85501 0.98811 1.44366 1.75449 1.11751 1.01857 1.18401 1.33921 0.95072 0.88430 0.94424 1.25986 0.99563 1.01073 0.94929 1.70013 1.47500 1.43452 0.98761 0.85985 0.78985 0.81073 0.77585 1.20573 1.24308 1.18300 1.20596 0.92978 0.92744 0.86822 1.21869 0.98991 0.97561 0.96938 1.21983 0.89378 0.98234 0.96212 1.61926 1.03150 1.21199 1.41985 1.22177 0.97146 0.97109 0.90402 1.21682 0.95039 1.00522 0.99324 1.21695 1.01900 0.99578 0.97083 1.22095 0.96877 0.91382 0.95885 1.21851 0.97724 0.98562 0.97431 0.92040 0.93847 0.91453 0.93640 0.90763 0.91886 0.94908 0.95362 0.92181 0.93224 0.91583 0.92237 0.94402 0.90317 0.94012 0.90643 0.94297 0.91710 0.92337 0.92224 0.92007 0.92321 0.94307 0.89766 0.93295 0.93774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.91 71.98 0.71 -2.87 16 2 C -0.12 -3.65 5.93 30.60 0.18 -3.47 16 3 C -0.12 -4.48 5.54 30.59 0.17 -4.31 16 4 C 0.13 5.50 4.50 86.38 0.39 5.88 16 5 N -0.61 -28.35 2.01 -677.60 -1.36 -29.71 16 6 C -0.23 -12.88 8.46 84.03 0.71 -12.16 16 7 H 0.04 2.41 7.18 -2.91 -0.02 2.39 16 8 C -0.02 -1.18 5.28 84.86 0.45 -0.73 16 9 N -0.95 -60.68 13.97 21.65 0.30 -60.38 16 10 Si 0.93 47.12 25.13 68.60 1.72 48.85 16 11 H -0.28 -13.47 6.66 99.48 0.66 -12.81 16 12 H -0.31 -16.22 7.11 99.48 0.71 -15.51 16 13 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 14 C 0.17 6.70 2.70 45.07 0.12 6.82 16 15 C -0.11 -4.10 5.45 30.65 0.17 -3.93 16 16 C 0.07 1.98 5.43 86.32 0.47 2.44 16 17 N -0.56 -15.98 4.81 -896.36 -4.31 -20.29 16 18 C 0.06 1.29 5.27 86.31 0.46 1.74 16 19 C -0.13 -2.52 5.18 30.59 0.16 -2.37 16 20 C -0.14 -2.17 9.91 71.98 0.71 -1.46 16 21 C 0.07 1.92 4.85 86.33 0.42 2.34 16 22 C -0.12 -4.41 5.31 30.65 0.16 -4.25 16 23 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 28 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 29 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.03 1.33 3.40 -2.39 -0.01 1.32 16 31 H 0.06 2.19 7.88 -2.39 -0.02 2.17 16 32 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 33 H 0.07 2.26 7.77 -2.39 -0.02 2.24 16 34 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.04 1.64 7.13 -2.38 -0.02 1.63 16 36 H 0.08 2.01 8.12 -2.39 -0.02 2.00 16 37 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.04 0.77 8.08 -2.39 -0.02 0.75 16 40 H 0.06 1.28 6.21 -2.39 -0.01 1.27 16 41 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 43 H 0.06 0.84 8.14 -2.38 -0.02 0.83 16 44 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 45 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 46 H 0.08 2.28 5.81 -2.39 -0.01 2.26 16 47 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.04 2.00 7.48 -2.38 -0.02 1.98 16 Total: -1.00 -65.38 358.17 2.46 -62.91 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.83 Total: 14.94 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 5.28 Total: -16.32 kcal Atomic # 7 Polarization: -105.01 SS G_CDS: -5.37 Total: -110.38 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.72 Total: 48.85 kcal Total: -65.38 2.46 -62.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258776087.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.452 kcal (2) G-P(sol) polarization free energy of solvation -65.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds