Wall clock time and date at job start Mon Mar 30 2020 19:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81005 * 1 3 3 C 1.76198 * 99.99866 * 2 1 4 4 C 1.36500 * 125.10926 * 179.97438 * 3 2 1 5 5 C 1.36642 * 114.85516 * 179.76532 * 4 3 2 6 6 C 1.37300 * 114.60791 * 0.47056 * 5 4 3 7 7 C 1.40744 * 125.20963 * 179.82138 * 6 5 4 8 8 C 1.36352 * 120.00182 * 224.73453 * 7 6 5 9 9 C 1.40771 * 120.00109 * 9.90119 * 8 7 6 10 10 O 1.21933 * 119.99547 * 6.70797 * 9 8 7 11 11 N 1.34774 * 120.00294 * 186.70808 * 9 8 7 12 12 C 1.36836 * 119.99944 * 180.02562 * 11 9 8 13 13 H 1.07995 * 119.99907 * 359.97438 * 12 11 9 14 14 C 1.38962 * 119.99539 * 179.97438 * 12 11 9 15 15 N 1.31426 * 120.00372 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99698 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47204 * 89.99890 * 16 14 12 18 18 H 1.48497 * 109.47482 * 210.00320 * 16 14 12 19 19 H 1.48511 * 109.47141 * 329.99918 * 16 14 12 20 20 S 1.75825 * 125.10651 * 0.02720 * 3 2 1 21 21 H 1.09000 * 109.47145 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47298 * 299.99943 * 1 2 3 23 23 H 1.08993 * 109.47317 * 60.00002 * 1 2 3 24 24 H 1.08001 * 122.57338 * 0.02942 * 4 3 2 25 25 H 1.08001 * 122.69892 * 180.26689 * 5 4 3 26 26 H 1.08006 * 120.00029 * 44.73063 * 7 6 5 27 27 H 1.08006 * 120.00143 * 189.63371 * 8 7 6 28 28 H 0.96998 * 119.99676 * 359.97438 * 11 9 8 29 29 H 0.96998 * 119.99881 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.3520 2.3145 0.0005 5 6 3.3459 3.6809 -0.0047 6 6 2.0951 4.2471 0.0007 7 6 1.8300 5.6293 0.0006 8 6 0.8817 6.1417 0.8357 9 6 0.3168 5.3329 1.8398 10 8 0.7596 4.2152 2.0432 11 7 -0.7136 5.7938 2.5762 12 6 -1.2624 5.0077 3.5526 13 1 -0.8701 4.0177 3.7327 14 6 -2.3244 5.4832 4.3122 15 7 -2.8013 6.6882 4.0933 16 14 -3.0740 4.4098 5.6445 17 1 -2.3703 4.6519 6.9295 18 1 -4.5129 4.7433 5.7977 19 1 -2.9348 2.9807 5.2655 20 16 0.8750 2.9808 0.0007 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 4.2647 1.7371 0.0005 25 1 4.2521 4.2683 -0.0092 26 1 2.3778 6.2842 -0.6609 27 1 0.5672 7.1695 0.7296 28 1 -1.0656 6.6831 2.4146 29 1 -3.5429 7.0199 4.6233 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292650087.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:41:37 Heat of formation + Delta-G solvation = 6.606715 kcal Electronic energy + Delta-G solvation = -15636.679058 eV Core-core repulsion = 12970.956847 eV Total energy + Delta-G solvation = -2665.722211 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 269.028 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.47757 -38.32031 -36.19309 -34.29085 -33.34426 -30.30615 -29.53237 -27.31751 -25.41666 -23.29920 -20.75928 -20.64534 -19.84304 -18.61304 -17.35176 -16.94472 -16.49081 -16.00429 -15.72143 -15.39158 -15.07185 -14.66977 -14.51083 -14.29210 -13.73390 -13.51993 -13.45191 -13.04566 -12.90653 -12.86355 -12.46722 -12.14779 -12.05801 -11.61185 -11.24949 -11.07192 -10.19591 -10.14282 -9.73029 -8.60949 -8.54930 -8.07484 -5.92321 -0.60389 0.56881 0.57148 0.85058 1.31365 1.39265 1.43802 1.51726 1.57676 1.95036 2.26020 2.58283 3.33270 3.46754 4.10834 4.15613 4.17388 4.45436 4.51506 4.61892 4.74443 4.80435 5.02836 5.21095 5.33063 5.40591 5.54672 5.72995 6.01550 6.55881 7.07799 7.51516 8.12007 8.61022 Molecular weight = 269.03amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.006219 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.143148 B = 4501.195485 C = 5546.945301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 S -0.061 6.061 3 C -0.260 4.260 4 C -0.134 4.134 5 C -0.120 4.120 6 C -0.178 4.178 7 C -0.019 4.019 8 C -0.204 4.204 9 C 0.437 3.563 10 O -0.610 6.610 11 N -0.553 5.553 12 C -0.318 4.318 13 H 0.084 0.916 14 C -0.013 4.013 15 N -0.911 5.911 16 Si 0.992 3.008 17 H -0.271 1.271 18 H -0.269 1.269 19 H -0.271 1.271 20 S 0.224 5.776 21 H 0.138 0.862 22 H 0.071 0.929 23 H 0.089 0.911 24 H 0.150 0.850 25 H 0.162 0.838 26 H 0.177 0.823 27 H 0.148 0.852 28 H 0.395 0.605 29 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.209 -5.541 -9.838 12.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 S 0.175 5.825 3 C -0.491 4.491 4 C -0.171 4.171 5 C -0.152 4.152 6 C -0.300 4.300 7 C -0.042 4.042 8 C -0.229 4.229 9 C 0.229 3.771 10 O -0.501 6.501 11 N -0.187 5.187 12 C -0.449 4.449 13 H 0.102 0.898 14 C -0.214 4.214 15 N -0.551 5.551 16 Si 0.816 3.184 17 H -0.197 1.197 18 H -0.194 1.194 19 H -0.195 1.195 20 S 0.494 5.506 21 H 0.156 0.844 22 H 0.090 0.910 23 H 0.108 0.892 24 H 0.167 0.833 25 H 0.180 0.820 26 H 0.194 0.806 27 H 0.166 0.834 28 H 0.228 0.772 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.356 -7.229 -9.598 13.155 hybrid contribution -0.036 1.436 0.964 1.730 sum 5.320 -5.793 -8.634 11.679 Atomic orbital electron populations 1.23756 0.93967 1.08816 1.05841 1.84829 1.07597 0.97189 1.92891 1.27196 1.02006 1.02030 1.17822 1.19992 0.96143 0.94548 1.06454 1.20618 0.96861 0.94049 1.03703 1.22447 0.96834 0.98197 1.12506 1.20843 0.94978 0.91558 0.96806 1.22330 1.01355 1.01655 0.97558 1.17458 0.83797 0.88679 0.87161 1.90823 1.64972 1.21986 1.72340 1.42128 1.28925 1.16959 1.30664 1.19725 1.13716 0.99664 1.11753 0.89841 1.26110 0.96860 0.97719 1.00666 1.69674 1.26472 1.17438 1.41489 0.84928 0.77648 0.78126 0.77718 1.19683 1.19381 1.19533 1.84012 1.08109 0.94190 1.64282 0.84360 0.91013 0.89180 0.83267 0.82049 0.80575 0.83420 0.77151 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.47 113.37 1.07 -2.76 15 2 S -0.06 -1.76 22.88 -56.49 -1.29 -3.05 15 3 C -0.26 -8.96 6.71 67.41 0.45 -8.51 15 4 C -0.13 -4.31 10.15 21.49 0.22 -4.09 15 5 C -0.12 -3.81 10.12 21.67 0.22 -3.59 15 6 C -0.18 -6.31 4.59 22.66 0.10 -6.20 15 7 C -0.02 -0.59 9.86 22.44 0.22 -0.37 15 8 C -0.20 -7.41 9.81 22.45 0.22 -7.19 15 9 C 0.44 20.72 7.02 84.86 0.60 21.32 15 10 O -0.61 -32.02 11.13 -5.10 -0.06 -32.08 15 11 N -0.55 -28.27 5.27 -315.76 -1.66 -29.93 15 12 C -0.32 -17.68 9.67 84.09 0.81 -16.87 15 13 H 0.08 4.94 7.15 -2.91 -0.02 4.92 15 14 C -0.01 -0.65 5.50 84.93 0.47 -0.19 15 15 N -0.91 -48.25 13.05 21.67 0.28 -47.97 15 16 Si 0.99 42.03 29.55 68.60 2.03 44.06 15 17 H -0.27 -11.24 7.11 99.48 0.71 -10.53 15 18 H -0.27 -10.76 7.11 99.48 0.71 -10.06 15 19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 20 S 0.22 8.51 17.96 -56.49 -1.01 7.49 15 21 H 0.14 2.49 8.14 -2.40 -0.02 2.47 15 22 H 0.07 2.10 8.00 -2.40 -0.02 2.08 15 23 H 0.09 2.12 8.00 -2.40 -0.02 2.10 15 24 H 0.15 4.06 8.06 -2.91 -0.02 4.04 15 25 H 0.16 4.01 8.06 -2.91 -0.02 3.99 15 26 H 0.18 3.74 8.06 -2.91 -0.02 3.72 15 27 H 0.15 4.38 8.06 -2.91 -0.02 4.35 15 28 H 0.39 19.31 7.85 -92.71 -0.73 18.58 15 29 H 0.28 13.87 8.31 -92.71 -0.77 13.10 15 Total: -1.00 -65.06 283.72 3.12 -61.94 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: 0.45 Total: 27.99 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 4.38 Total: -28.45 kcal Atomic # 7 Polarization: -76.52 SS G_CDS: -1.38 Total: -77.90 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.06 Total: -32.08 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: 6.75 SS G_CDS: -2.31 Total: 4.44 kcal Total: -65.06 3.12 -61.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292650087.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.549 kcal (2) G-P(sol) polarization free energy of solvation -65.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds