Wall clock time and date at job start Mon Mar 30 2020 19:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46966 * 2 1 4 4 C 1.52994 * 109.47347 * 239.99554 * 2 1 3 5 5 C 1.50693 * 109.47098 * 64.99851 * 4 2 1 6 6 H 1.07994 * 120.00367 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99824 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00044 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00159 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47415 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47591 * 240.00332 * 9 7 5 12 12 H 1.48496 * 109.47507 * 120.00041 * 9 7 5 13 13 C 1.53005 * 109.47007 * 119.99147 * 2 1 3 14 14 N 1.46904 * 109.47326 * 295.00455 * 13 2 1 15 15 C 1.46898 * 110.99753 * 179.97438 * 14 13 2 16 16 H 1.08995 * 109.47605 * 324.99840 * 15 14 13 17 17 C 1.53004 * 109.46864 * 85.00037 * 15 14 13 18 18 C 1.52994 * 109.46942 * 179.97438 * 17 15 14 19 19 C 1.52994 * 109.47707 * 299.99871 * 18 17 15 20 20 C 1.53005 * 109.47082 * 59.99776 * 19 18 17 21 21 C 1.53000 * 109.47298 * 300.00713 * 20 19 18 22 22 H 1.09006 * 109.46513 * 299.99641 * 21 20 19 23 23 N 1.46893 * 109.47216 * 179.97438 * 21 20 19 24 24 C 1.46903 * 111.00146 * 307.28533 * 23 21 20 25 25 C 1.46904 * 111.00410 * 71.24414 * 23 21 20 26 26 H 1.09006 * 109.47358 * 300.00664 * 1 2 3 27 27 H 1.09001 * 109.46997 * 60.00536 * 1 2 3 28 28 H 1.08996 * 109.47103 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46997 * 304.99741 * 4 2 1 30 30 H 1.09004 * 109.47136 * 185.00564 * 4 2 1 31 31 H 0.97005 * 120.00322 * 359.97438 * 8 7 5 32 32 H 1.09008 * 109.46747 * 55.00059 * 13 2 1 33 33 H 1.08994 * 109.47018 * 174.99830 * 13 2 1 34 34 H 1.00905 * 110.99367 * 303.95245 * 14 13 2 35 35 H 1.08997 * 109.47285 * 299.99462 * 17 15 14 36 36 H 1.09004 * 109.46955 * 59.99690 * 17 15 14 37 37 H 1.09004 * 109.47135 * 60.00308 * 18 17 15 38 38 H 1.08998 * 109.47535 * 179.97438 * 18 17 15 39 39 H 1.08995 * 109.48070 * 179.97438 * 19 18 17 40 40 H 1.09004 * 109.47180 * 300.00409 * 19 18 17 41 41 H 1.09006 * 109.47046 * 60.00027 * 20 19 18 42 42 H 1.08997 * 109.47553 * 180.02562 * 20 19 18 43 43 H 1.09005 * 109.46412 * 60.00353 * 24 23 21 44 44 H 1.08996 * 109.47175 * 180.02562 * 24 23 21 45 45 H 1.08994 * 109.46932 * 300.00239 * 24 23 21 46 46 H 1.09007 * 109.46815 * 54.21458 * 25 23 21 47 47 H 1.08998 * 109.47248 * 174.21539 * 25 23 21 48 48 H 1.08998 * 109.46702 * 294.22219 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6414 0.0568 -2.4765 6 1 1.0807 0.9743 -2.3757 7 6 1.9934 -0.4020 -3.7281 8 7 2.6766 -1.5190 -3.8508 9 14 1.4999 0.5628 -5.2495 10 1 0.7433 1.7745 -4.8436 11 1 0.6461 -0.2861 -6.1189 12 1 2.7182 0.9677 -5.9958 13 6 2.0400 -0.7211 1.2494 14 7 1.6513 0.0377 2.4457 15 6 2.1247 -0.6268 3.6673 16 1 2.0807 -1.7076 3.5335 17 6 3.5684 -0.2062 3.9499 18 6 4.0612 -0.8977 5.2226 19 6 3.1723 -0.4927 6.4001 20 6 1.7286 -0.9132 6.1176 21 6 1.2357 -0.2217 4.8448 22 1 1.2797 0.8593 4.9784 23 7 -0.1502 -0.6259 4.5733 24 6 -0.2785 -2.0892 4.5585 25 6 -1.0738 -0.0262 5.5456 26 1 -0.3634 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6055 -1.7199 -1.2949 30 1 3.1264 -0.7996 -1.2054 31 1 2.9332 -2.0200 -3.0608 32 1 1.6053 -1.7197 1.2954 33 1 3.1263 -0.7993 1.2057 34 1 1.9881 0.9876 2.3966 35 1 4.2016 -0.4944 3.1109 36 1 3.6123 0.8747 4.0838 37 1 4.0172 -1.9786 5.0890 38 1 5.0898 -0.5985 5.4237 39 1 3.5231 -0.9857 7.3067 40 1 3.2163 0.5883 6.5336 41 1 1.6845 -1.9941 5.9840 42 1 1.0951 -0.6243 6.9562 43 1 0.0188 -2.4897 5.5278 44 1 -1.3142 -2.3611 4.3549 45 1 0.3647 -2.5025 3.7817 46 1 -0.9352 1.0550 5.5593 47 1 -2.1005 -0.2573 5.2619 48 1 -0.8708 -0.4311 6.5370 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330608026.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:41:54 Heat of formation + Delta-G solvation = -26.528626 kcal Electronic energy + Delta-G solvation = -21817.598859 eV Core-core repulsion = 18905.985090 eV Total energy + Delta-G solvation = -2911.613769 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.86683 -36.63025 -35.63981 -33.77722 -31.91244 -29.85320 -28.57677 -27.64178 -26.28397 -24.83438 -24.23055 -22.64632 -21.63023 -21.09418 -19.89742 -18.93113 -16.62551 -16.24445 -15.34298 -15.07574 -14.77390 -14.69022 -14.27977 -13.94795 -13.70860 -13.57218 -13.42674 -13.04725 -12.68734 -12.55639 -12.15661 -11.86318 -11.76093 -11.67233 -11.63448 -11.38033 -11.22209 -11.01637 -10.94405 -10.80856 -10.67547 -10.57037 -10.37106 -10.09031 -10.00056 -9.69892 -9.32765 -8.39438 -8.22977 -8.10285 -7.86895 -6.26371 -3.93649 3.49030 3.53161 3.66604 3.92099 4.29829 4.57975 4.62162 4.72202 4.88036 4.98477 5.01609 5.19300 5.20761 5.26738 5.33677 5.39624 5.46043 5.50137 5.52654 5.57336 5.67423 5.76714 5.82622 5.86821 5.88384 5.91211 5.91953 5.95442 6.01910 6.13009 6.18989 6.23033 6.46998 6.59761 6.75021 7.02540 7.11183 7.12772 7.22056 7.25305 7.48094 7.52323 7.67982 7.81504 8.35398 8.58507 8.99835 9.77702 11.14196 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.027935 B = 0.003851 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.070280 B = 7268.744010 C = 7843.749581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.073 4.073 3 H 0.052 0.948 4 C 0.014 3.986 5 C -0.591 4.591 6 H 0.050 0.950 7 C 0.011 3.989 8 N -0.919 5.919 9 Si 1.072 2.928 10 H -0.289 1.289 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.067 3.933 14 N -0.663 5.663 15 C 0.099 3.901 16 H 0.074 0.926 17 C -0.151 4.151 18 C -0.116 4.116 19 C -0.113 4.113 20 C -0.154 4.154 21 C 0.100 3.900 22 H 0.078 0.922 23 N -0.516 5.516 24 C 0.023 3.977 25 C 0.025 3.975 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.036 0.964 29 H 0.006 0.994 30 H 0.001 0.999 31 H 0.268 0.732 32 H 0.061 0.939 33 H 0.017 0.983 34 H 0.333 0.667 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.022 0.978 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.649 1.526 22.678 22.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.092 4.092 3 H 0.071 0.929 4 C -0.024 4.024 5 C -0.629 4.629 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.556 5.556 9 Si 0.901 3.099 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.061 4.061 14 N -0.291 5.291 15 C -0.013 4.013 16 H 0.092 0.908 17 C -0.191 4.191 18 C -0.154 4.154 19 C -0.152 4.152 20 C -0.194 4.194 21 C -0.010 4.010 22 H 0.096 0.904 23 N -0.237 5.237 24 C -0.125 4.125 25 C -0.124 4.124 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.024 0.976 30 H 0.019 0.981 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.036 0.964 34 H 0.151 0.849 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.041 0.959 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -2.369 1.439 20.555 20.741 hybrid contribution 1.170 -0.212 2.459 2.731 sum -1.199 1.228 23.014 23.078 Atomic orbital electron populations 1.21539 0.95366 1.00422 1.00285 1.21027 0.96254 0.98622 0.93342 0.92940 1.19253 0.94962 0.95606 0.92544 1.22104 1.38335 1.10214 0.92262 0.93142 1.25811 0.94798 0.97182 1.01366 1.70716 1.36406 1.14976 1.33494 0.83506 0.76188 0.75081 0.75114 1.21538 1.21455 1.21520 1.22131 0.96511 0.97602 0.89904 1.60473 1.63216 1.04964 1.00457 1.21535 0.90338 0.98972 0.90408 0.90828 1.22322 0.98013 1.00751 0.97984 1.21480 0.98791 1.00457 0.94673 1.21459 0.94730 1.01099 0.97871 1.22264 0.96777 1.01482 0.98885 1.21688 0.87691 0.99439 0.92141 0.90378 1.62032 1.04718 1.08532 1.48404 1.22417 1.02187 0.88170 0.99770 1.22383 0.97119 0.99829 0.93029 0.93329 0.93074 0.94493 0.97606 0.98067 0.92172 0.92008 0.96434 0.84895 0.91637 0.91799 0.92097 0.92114 0.92270 0.92031 0.91520 0.92088 0.95926 0.91845 0.91267 0.91710 0.91650 0.96297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 8.89 37.16 0.33 -2.12 16 2 C -0.07 -1.56 2.48 -90.62 -0.22 -1.78 16 3 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.01 0.36 3.76 -27.89 -0.10 0.26 16 5 C -0.59 -17.11 8.41 -34.44 -0.29 -17.40 16 6 H 0.05 1.45 7.06 -52.49 -0.37 1.08 16 7 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 8 N -0.92 -28.81 13.65 55.43 0.76 -28.06 16 9 Si 1.07 26.08 29.90 -169.99 -5.08 20.99 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 13 C 0.07 1.19 4.87 -3.82 -0.02 1.17 16 14 N -0.66 -9.73 5.54 -106.72 -0.59 -10.32 16 15 C 0.10 1.20 1.75 -67.71 -0.12 1.08 16 16 H 0.07 0.98 6.25 -51.93 -0.32 0.66 16 17 C -0.15 -1.64 5.17 -26.73 -0.14 -1.78 16 18 C -0.12 -1.07 5.92 -26.74 -0.16 -1.23 16 19 C -0.11 -0.95 5.92 -26.73 -0.16 -1.11 16 20 C -0.15 -1.41 4.43 -26.73 -0.12 -1.53 16 21 C 0.10 1.09 1.84 -67.72 -0.12 0.96 16 22 H 0.08 0.88 7.97 -51.93 -0.41 0.47 16 23 N -0.52 -6.08 4.79 -243.17 -1.17 -7.25 16 24 C 0.02 0.25 8.76 60.07 0.53 0.78 16 25 C 0.02 0.24 9.30 60.07 0.56 0.80 16 26 H 0.05 0.92 7.75 -51.93 -0.40 0.51 16 27 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.01 0.16 8.01 -51.93 -0.42 -0.26 16 30 H 0.00 0.03 8.01 -51.93 -0.42 -0.39 16 31 H 0.27 8.38 7.22 -40.82 -0.29 8.09 16 32 H 0.06 1.14 8.06 -51.92 -0.42 0.72 16 33 H 0.02 0.31 7.44 -51.93 -0.39 -0.07 16 34 H 0.33 4.78 8.47 -39.29 -0.33 4.45 16 35 H 0.06 0.80 7.45 -51.93 -0.39 0.41 16 36 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.64 6.32 -51.93 -0.33 0.31 16 42 H 0.06 0.54 6.86 -51.93 -0.36 0.18 16 43 H 0.02 0.22 6.20 -51.93 -0.32 -0.10 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.85 6.51 -51.93 -0.34 0.51 16 46 H 0.06 0.62 8.01 -51.93 -0.42 0.20 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.02 0.17 6.92 -51.93 -0.36 -0.19 16 LS Contribution 356.88 15.07 5.38 5.38 Total: -1.00 -30.58 356.88 -10.08 -40.66 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -9.24 Total: 0.25 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: -0.14 Total: -21.66 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: -1.00 Total: -45.63 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -5.08 Total: 20.99 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.58 -10.08 -40.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330608026.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.136 kcal (2) G-P(sol) polarization free energy of solvation -30.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds