Wall clock time and date at job start Mon Mar 30 2020 19:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46966 * 2 1 4 4 C 1.52994 * 109.47347 * 239.99554 * 2 1 3 5 5 C 1.50693 * 109.47098 * 64.99851 * 4 2 1 6 6 H 1.07994 * 120.00367 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99824 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00044 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00159 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47415 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47591 * 240.00332 * 9 7 5 12 12 H 1.48496 * 109.47507 * 120.00041 * 9 7 5 13 13 C 1.53005 * 109.47007 * 119.99147 * 2 1 3 14 14 N 1.46904 * 109.47326 * 295.00455 * 13 2 1 15 15 C 1.46898 * 110.99753 * 179.97438 * 14 13 2 16 16 H 1.08995 * 109.47605 * 324.99840 * 15 14 13 17 17 C 1.53004 * 109.46864 * 85.00037 * 15 14 13 18 18 C 1.52994 * 109.46942 * 179.97438 * 17 15 14 19 19 C 1.52994 * 109.47707 * 299.99871 * 18 17 15 20 20 C 1.53005 * 109.47082 * 59.99776 * 19 18 17 21 21 C 1.53000 * 109.47298 * 300.00713 * 20 19 18 22 22 H 1.09006 * 109.46513 * 299.99641 * 21 20 19 23 23 N 1.46893 * 109.47216 * 179.97438 * 21 20 19 24 24 C 1.46903 * 111.00146 * 307.28533 * 23 21 20 25 25 C 1.46904 * 111.00410 * 71.24414 * 23 21 20 26 26 H 1.09006 * 109.47358 * 300.00664 * 1 2 3 27 27 H 1.09001 * 109.46997 * 60.00536 * 1 2 3 28 28 H 1.08996 * 109.47103 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46997 * 304.99741 * 4 2 1 30 30 H 1.09004 * 109.47136 * 185.00564 * 4 2 1 31 31 H 0.97005 * 120.00322 * 359.97438 * 8 7 5 32 32 H 1.09008 * 109.46747 * 55.00059 * 13 2 1 33 33 H 1.08994 * 109.47018 * 174.99830 * 13 2 1 34 34 H 1.00905 * 110.99367 * 303.95245 * 14 13 2 35 35 H 1.08997 * 109.47285 * 299.99462 * 17 15 14 36 36 H 1.09004 * 109.46955 * 59.99690 * 17 15 14 37 37 H 1.09004 * 109.47135 * 60.00308 * 18 17 15 38 38 H 1.08998 * 109.47535 * 179.97438 * 18 17 15 39 39 H 1.08995 * 109.48070 * 179.97438 * 19 18 17 40 40 H 1.09004 * 109.47180 * 300.00409 * 19 18 17 41 41 H 1.09006 * 109.47046 * 60.00027 * 20 19 18 42 42 H 1.08997 * 109.47553 * 180.02562 * 20 19 18 43 43 H 1.09005 * 109.46412 * 60.00353 * 24 23 21 44 44 H 1.08996 * 109.47175 * 180.02562 * 24 23 21 45 45 H 1.08994 * 109.46932 * 300.00239 * 24 23 21 46 46 H 1.09007 * 109.46815 * 54.21458 * 25 23 21 47 47 H 1.08998 * 109.47248 * 174.21539 * 25 23 21 48 48 H 1.08998 * 109.46702 * 294.22219 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6414 0.0568 -2.4765 6 1 1.0807 0.9743 -2.3757 7 6 1.9934 -0.4020 -3.7281 8 7 2.6766 -1.5190 -3.8508 9 14 1.4999 0.5628 -5.2495 10 1 0.7433 1.7745 -4.8436 11 1 0.6461 -0.2861 -6.1189 12 1 2.7182 0.9677 -5.9958 13 6 2.0400 -0.7211 1.2494 14 7 1.6513 0.0377 2.4457 15 6 2.1247 -0.6268 3.6673 16 1 2.0807 -1.7076 3.5335 17 6 3.5684 -0.2062 3.9499 18 6 4.0612 -0.8977 5.2226 19 6 3.1723 -0.4927 6.4001 20 6 1.7286 -0.9132 6.1176 21 6 1.2357 -0.2217 4.8448 22 1 1.2797 0.8593 4.9784 23 7 -0.1502 -0.6259 4.5733 24 6 -0.2785 -2.0892 4.5585 25 6 -1.0738 -0.0262 5.5456 26 1 -0.3634 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6055 -1.7199 -1.2949 30 1 3.1264 -0.7996 -1.2054 31 1 2.9332 -2.0200 -3.0608 32 1 1.6053 -1.7197 1.2954 33 1 3.1263 -0.7993 1.2057 34 1 1.9881 0.9876 2.3966 35 1 4.2016 -0.4944 3.1109 36 1 3.6123 0.8747 4.0838 37 1 4.0172 -1.9786 5.0890 38 1 5.0898 -0.5985 5.4237 39 1 3.5231 -0.9857 7.3067 40 1 3.2163 0.5883 6.5336 41 1 1.6845 -1.9941 5.9840 42 1 1.0951 -0.6243 6.9562 43 1 0.0188 -2.4897 5.5278 44 1 -1.3142 -2.3611 4.3549 45 1 0.3647 -2.5025 3.7817 46 1 -0.9352 1.0550 5.5593 47 1 -2.1005 -0.2573 5.2619 48 1 -0.8708 -0.4311 6.5370 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330608026.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:41:53 Heat of formation + Delta-G solvation = -45.693073 kcal Electronic energy + Delta-G solvation = -21818.429892 eV Core-core repulsion = 18905.985090 eV Total energy + Delta-G solvation = -2912.444802 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.77189 -38.12366 -36.66149 -35.41828 -33.70997 -30.68385 -29.77046 -28.47483 -28.26521 -26.44667 -25.05929 -24.49695 -22.71432 -21.88686 -21.28419 -20.19488 -18.83814 -17.16502 -16.31570 -16.17770 -16.00221 -15.76701 -15.60068 -15.39576 -15.25846 -14.88788 -14.49717 -14.05575 -13.91556 -13.81201 -13.41181 -13.31475 -13.06046 -12.95605 -12.82000 -12.60183 -12.55533 -12.51267 -12.05290 -11.92080 -11.86833 -11.84444 -11.76269 -11.53283 -11.44331 -11.29158 -11.11648 -10.52813 -10.51269 -9.10091 -8.94062 -8.64903 -6.33418 1.52428 1.62295 1.78772 2.58013 3.06249 3.19518 3.24368 3.74973 3.88820 4.04795 4.07556 4.16329 4.19006 4.30262 4.36347 4.38014 4.45194 4.48228 4.50988 4.57604 4.67711 4.71125 4.78658 4.83063 4.87389 4.93178 4.94581 5.05583 5.08013 5.08635 5.11956 5.14070 5.16052 5.21828 5.29751 5.35192 5.42159 5.43682 5.52933 5.68268 6.04795 6.18423 6.23836 6.28994 6.32199 6.61342 6.63807 7.47559 8.75728 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.027935 B = 0.003851 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.070280 B = 7268.744010 C = 7843.749581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.065 4.065 3 H 0.051 0.949 4 C 0.017 3.983 5 C -0.603 4.603 6 H 0.051 0.949 7 C -0.043 4.043 8 N -0.943 5.943 9 Si 1.121 2.879 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.085 3.915 14 N -0.661 5.661 15 C 0.101 3.899 16 H 0.060 0.940 17 C -0.147 4.147 18 C -0.113 4.113 19 C -0.109 4.109 20 C -0.147 4.147 21 C 0.105 3.895 22 H 0.078 0.922 23 N -0.538 5.538 24 C 0.026 3.974 25 C 0.027 3.973 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.029 0.971 29 H -0.016 1.016 30 H -0.019 1.019 31 H 0.253 0.747 32 H 0.052 0.948 33 H 0.012 0.988 34 H 0.338 0.662 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.036 0.964 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.152 2.762 24.248 24.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.084 4.084 3 H 0.069 0.931 4 C -0.020 4.020 5 C -0.641 4.641 6 H 0.070 0.930 7 C -0.240 4.240 8 N -0.581 5.581 9 Si 0.943 3.057 10 H -0.194 1.194 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.044 4.044 14 N -0.290 5.290 15 C -0.010 4.010 16 H 0.079 0.921 17 C -0.186 4.186 18 C -0.151 4.151 19 C -0.147 4.147 20 C -0.187 4.187 21 C -0.004 4.004 22 H 0.096 0.904 23 N -0.260 5.260 24 C -0.122 4.122 25 C -0.121 4.121 26 H 0.088 0.912 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.002 0.998 30 H -0.001 1.001 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.030 0.970 34 H 0.156 0.844 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.055 0.945 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.872 2.677 22.166 22.511 hybrid contribution 1.327 -0.615 2.017 2.492 sum -1.545 2.061 24.183 24.320 Atomic orbital electron populations 1.21401 0.94561 0.99981 1.00335 1.20868 0.96727 0.98087 0.92730 0.93090 1.19186 0.93544 0.94799 0.94516 1.22479 1.37874 1.10324 0.93407 0.93036 1.27411 0.94054 0.97286 1.05212 1.70859 1.38233 1.16223 1.32789 0.82890 0.76586 0.74546 0.71727 1.19388 1.20532 1.20473 1.21763 0.95821 0.96957 0.89856 1.60423 1.63416 1.04990 1.00154 1.21571 0.91662 0.97989 0.89774 0.92139 1.22250 0.96669 1.01325 0.98397 1.21465 0.99574 1.00004 0.94092 1.21441 0.93820 1.01620 0.97842 1.22188 0.97468 1.00958 0.98053 1.21610 0.87181 0.99521 0.92095 0.90382 1.62005 1.05430 1.08862 1.49747 1.22350 1.01840 0.88078 0.99906 1.22377 0.96663 0.99886 0.93167 0.91214 0.94858 0.95151 0.99819 1.00111 0.93714 0.92933 0.97024 0.84423 0.93351 0.91100 0.92506 0.91123 0.90852 0.91419 0.91939 0.91087 0.94528 0.91771 0.93036 0.91441 0.91615 0.95054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.32 8.89 71.98 0.64 -3.68 16 2 C -0.07 -2.79 2.48 -10.79 -0.03 -2.81 16 3 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 4 C 0.02 0.92 3.76 29.84 0.11 1.03 16 5 C -0.60 -35.38 8.41 25.60 0.22 -35.17 16 6 H 0.05 2.96 7.06 -2.91 -0.02 2.94 16 7 C -0.04 -2.58 5.46 84.66 0.46 -2.11 16 8 N -0.94 -60.30 13.65 21.45 0.29 -60.01 16 9 Si 1.12 51.99 29.90 68.60 2.05 54.04 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 13 C 0.09 3.05 4.87 86.30 0.42 3.47 16 14 N -0.66 -18.98 5.54 -491.55 -2.72 -21.70 16 15 C 0.10 2.37 1.75 44.92 0.08 2.45 16 16 H 0.06 1.61 6.25 -2.39 -0.01 1.59 16 17 C -0.15 -3.04 5.17 30.59 0.16 -2.88 16 18 C -0.11 -1.88 5.92 30.59 0.18 -1.70 16 19 C -0.11 -1.53 5.92 30.59 0.18 -1.35 16 20 C -0.15 -2.33 4.43 30.60 0.14 -2.20 16 21 C 0.11 2.11 1.84 44.92 0.08 2.19 16 22 H 0.08 1.59 7.97 -2.38 -0.02 1.57 16 23 N -0.54 -11.86 4.79 -923.27 -4.42 -16.28 16 24 C 0.03 0.56 8.76 127.69 1.12 1.68 16 25 C 0.03 0.48 9.30 127.69 1.19 1.66 16 26 H 0.07 2.55 7.75 -2.38 -0.02 2.53 16 27 H 0.03 1.45 6.95 -2.39 -0.02 1.43 16 28 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 29 H -0.02 -0.96 8.01 -2.38 -0.02 -0.98 16 30 H -0.02 -1.12 8.01 -2.39 -0.02 -1.14 16 31 H 0.25 16.48 7.22 -92.70 -0.67 15.81 16 32 H 0.05 1.97 8.06 -2.38 -0.02 1.95 16 33 H 0.01 0.43 7.44 -2.39 -0.02 0.41 16 34 H 0.34 9.31 8.47 -89.69 -0.76 8.55 16 35 H 0.05 1.16 7.45 -2.39 -0.02 1.15 16 36 H 0.07 1.37 8.13 -2.39 -0.02 1.35 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 1.06 6.32 -2.38 -0.02 1.05 16 42 H 0.07 1.02 6.86 -2.39 -0.02 1.00 16 43 H 0.04 0.66 6.20 -2.38 -0.01 0.64 16 44 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.05 1.26 6.51 -2.39 -0.02 1.24 16 46 H 0.07 1.14 8.01 -2.38 -0.02 1.12 16 47 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.03 0.47 6.92 -2.39 -0.02 0.45 16 Total: -1.00 -65.89 356.88 0.38 -65.51 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.24 Total: 17.87 kcal Atomic # 6 Polarization: -44.37 SS G_CDS: 4.95 Total: -39.42 kcal Atomic # 7 Polarization: -91.14 SS G_CDS: -6.85 Total: -97.99 kcal Atomic # 14 Polarization: 51.99 SS G_CDS: 2.05 Total: 54.04 kcal Total: -65.89 0.38 -65.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330608026.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.813 kcal (2) G-P(sol) polarization free energy of solvation -65.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds