Wall clock time and date at job start Mon Mar 30 2020 19:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46945 * 2 1 4 4 C 1.52996 * 109.47185 * 239.99581 * 2 1 3 5 5 C 1.50703 * 109.47171 * 65.00087 * 4 2 1 6 6 H 1.08004 * 119.99521 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99893 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00073 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99650 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47558 * 59.99840 * 9 7 5 11 11 H 1.48496 * 109.47128 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47043 * 299.99840 * 9 7 5 13 13 C 1.53006 * 109.47234 * 119.99498 * 2 1 3 14 14 N 1.46898 * 109.47006 * 295.00220 * 13 2 1 15 15 C 1.46955 * 111.00152 * 293.79671 * 14 13 2 16 16 C 1.53056 * 109.36311 * 176.81210 * 15 14 13 17 17 N 1.46959 * 109.36372 * 58.40247 * 16 15 14 18 18 C 1.46898 * 110.99735 * 176.80935 * 17 16 15 19 19 C 1.53003 * 109.46890 * 183.80152 * 18 17 16 20 20 C 1.52997 * 109.47333 * 303.79932 * 18 17 16 21 21 C 1.53002 * 109.47137 * 63.80262 * 18 17 16 22 22 C 1.46955 * 110.88047 * 300.67727 * 17 16 15 23 23 C 1.46960 * 111.00062 * 169.99567 * 14 13 2 24 24 H 1.09002 * 109.47112 * 60.00472 * 1 2 3 25 25 H 1.09006 * 109.47389 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47743 * 299.99957 * 1 2 3 27 27 H 1.09004 * 109.46864 * 184.99545 * 4 2 1 28 28 H 1.08995 * 109.47184 * 304.99824 * 4 2 1 29 29 H 0.97001 * 119.99516 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.47002 * 55.00002 * 13 2 1 31 31 H 1.08993 * 109.46955 * 175.00440 * 13 2 1 32 32 H 1.08996 * 109.48813 * 296.77807 * 15 14 13 33 33 H 1.08997 * 109.48926 * 56.84659 * 15 14 13 34 34 H 1.09002 * 109.49102 * 298.43551 * 16 15 14 35 35 H 1.09001 * 109.48776 * 178.36940 * 16 15 14 36 36 H 1.08990 * 109.47134 * 59.99819 * 19 18 17 37 37 H 1.09000 * 109.46939 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.46956 * 299.99673 * 19 18 17 39 39 H 1.09000 * 109.47331 * 60.00068 * 20 18 17 40 40 H 1.09000 * 109.47273 * 180.02562 * 20 18 17 41 41 H 1.09007 * 109.47153 * 300.00112 * 20 18 17 42 42 H 1.08999 * 109.47112 * 59.99509 * 21 18 17 43 43 H 1.09000 * 109.47148 * 179.97438 * 21 18 17 44 44 H 1.09000 * 109.46796 * 299.99485 * 21 18 17 45 45 H 1.08996 * 109.48813 * 299.35639 * 22 17 16 46 46 H 1.09002 * 109.50479 * 179.29910 * 22 17 16 47 47 H 1.09001 * 109.48962 * 303.15857 * 23 14 13 48 48 H 1.09002 * 109.48474 * 63.22198 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2491 5 6 1.6413 0.0569 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9933 -0.4020 -3.7282 8 7 2.6773 -1.5185 -3.8509 9 14 1.4997 0.5631 -5.2496 10 1 2.0918 1.9235 -5.1866 11 1 1.9946 -0.1370 -6.4620 12 1 0.0198 0.6697 -5.3096 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0376 2.4456 15 6 2.3371 1.3365 2.4913 16 6 1.8465 2.1269 3.7067 17 7 2.1076 1.3535 4.9287 18 6 1.7190 2.1123 6.1250 19 6 2.0921 1.3163 7.3773 20 6 2.4515 3.4554 6.1374 21 6 0.2085 2.3553 6.1064 22 6 1.4219 0.0546 4.8831 23 6 1.9124 -0.7358 3.6677 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3635 0.5138 0.8900 27 1 3.1263 -0.7994 -1.2055 28 1 1.6054 -1.7198 -1.2950 29 1 2.9245 -1.8414 -4.7315 30 1 1.6054 -1.7197 1.2953 31 1 3.1262 -0.7993 1.2057 32 1 3.4124 1.1774 2.5709 33 1 2.1182 1.8955 1.5815 34 1 0.7759 2.3096 3.6138 35 1 2.3749 3.0788 3.7589 36 1 3.1681 1.1432 7.3905 37 1 1.8033 1.8791 8.2649 38 1 1.5702 0.3594 7.3685 39 1 2.1857 4.0225 5.2453 40 1 2.1635 4.0182 7.0253 41 1 3.5277 3.2823 6.1507 42 1 -0.3134 1.3983 6.0976 43 1 -0.0800 2.9179 6.9943 44 1 -0.0573 2.9224 5.2143 45 1 0.3465 0.2137 4.8034 46 1 1.6405 -0.5045 5.7929 47 1 1.3840 -1.6877 3.6155 48 1 2.9830 -0.9184 3.7606 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336723053.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:41:58 Heat of formation + Delta-G solvation = -6.971284 kcal Electronic energy + Delta-G solvation = -21785.615291 eV Core-core repulsion = 18874.849592 eV Total energy + Delta-G solvation = -2910.765699 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.95852 -37.40999 -34.75726 -32.54561 -31.39437 -31.02839 -27.54019 -27.52482 -27.16771 -26.40760 -24.28423 -23.16174 -22.28221 -20.26784 -18.80240 -18.70070 -16.64662 -16.13308 -15.09390 -14.87960 -14.78453 -14.58890 -14.51603 -14.25722 -13.99788 -13.71667 -13.17812 -12.74652 -12.54367 -12.34253 -12.07668 -11.96968 -11.94788 -11.79044 -11.48302 -11.34452 -11.20845 -11.16639 -10.91490 -10.82155 -10.70138 -10.56807 -10.44480 -10.25140 -10.14796 -9.54255 -9.08749 -8.92068 -8.31795 -8.29591 -7.92649 -5.94699 -3.95711 3.36212 3.40481 3.43004 3.76998 4.20809 4.50924 4.59693 4.72187 4.91829 5.00608 5.16607 5.27742 5.35101 5.37460 5.41102 5.46679 5.49295 5.52083 5.58510 5.65564 5.68934 5.73275 5.77826 5.81840 5.89163 5.96256 5.98647 6.08691 6.10036 6.19519 6.23153 6.25555 6.44146 6.59807 6.74143 7.01380 7.04778 7.10297 7.19421 7.25256 7.45853 7.50942 7.73067 7.89602 8.05832 8.50049 9.10518 9.67415 11.16866 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.038483 B = 0.003509 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.414587 B = 7976.431066 C = 8233.286929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.081 4.081 3 H 0.055 0.945 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.062 3.938 14 N -0.536 5.536 15 C 0.055 3.945 16 C 0.054 3.946 17 N -0.528 5.528 18 C 0.100 3.900 19 C -0.139 4.139 20 C -0.141 4.141 21 C -0.181 4.181 22 C 0.054 3.946 23 C 0.056 3.944 24 H 0.052 0.948 25 H 0.038 0.962 26 H 0.040 0.960 27 H 0.012 0.988 28 H 0.015 0.985 29 H 0.260 0.740 30 H 0.067 0.933 31 H 0.028 0.972 32 H 0.037 0.963 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.044 0.956 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 6.296 21.812 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.260 5.260 15 C -0.073 4.073 16 C -0.074 4.074 17 N -0.253 5.253 18 C 0.011 3.989 19 C -0.196 4.196 20 C -0.198 4.198 21 C -0.239 4.239 22 C -0.073 4.073 23 C -0.072 4.072 24 H 0.071 0.929 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.030 0.970 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.990 6.170 21.680 22.628 hybrid contribution -0.221 0.387 -0.978 1.075 sum -2.211 6.556 20.702 21.828 Atomic orbital electron populations 1.21566 0.95844 1.00428 0.99999 1.21218 0.95867 0.99040 0.93807 0.92649 1.19117 0.95879 0.95536 0.90461 1.21203 1.34585 1.08251 0.91011 0.92662 1.25017 0.95353 0.95102 0.99060 1.69958 1.39050 1.21277 1.23439 0.86697 0.78889 0.80115 0.82528 1.20318 1.21394 1.20286 1.22295 0.97613 0.97114 0.89525 1.62201 1.57926 1.03853 1.02050 1.22184 0.96253 0.91147 0.97706 1.22264 0.99632 0.96579 0.88945 1.62415 1.57514 1.03691 1.01643 1.21053 0.92965 0.93947 0.90936 1.21881 1.02181 0.99724 0.95822 1.21915 1.00956 0.95337 1.01629 1.22486 0.97189 1.02088 1.02172 1.22222 0.96827 0.90372 0.97926 1.22124 0.99152 0.96392 0.89557 0.92871 0.94278 0.94084 0.96978 0.96640 0.93068 0.91419 0.95337 0.94482 0.89650 0.93838 0.90360 0.91875 0.92466 0.92538 0.92333 0.92435 0.91841 0.92290 0.92360 0.92247 0.93816 0.90558 0.90696 0.94527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.89 37.15 0.33 -2.07 16 2 C -0.08 -1.67 2.26 -90.62 -0.21 -1.88 16 3 H 0.06 1.17 6.28 -51.93 -0.33 0.84 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.49 8.41 -34.44 -0.29 -14.78 16 6 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 9 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.06 1.10 4.35 -3.82 -0.02 1.09 16 14 N -0.54 -8.23 4.16 -234.47 -0.98 -9.21 16 15 C 0.06 0.81 5.42 -3.77 -0.02 0.78 16 16 C 0.05 0.65 4.83 -3.76 -0.02 0.64 16 17 N -0.53 -5.99 4.53 -218.81 -0.99 -6.98 16 18 C 0.10 0.94 0.71 -131.60 -0.09 0.84 16 19 C -0.14 -1.14 8.25 37.16 0.31 -0.83 16 20 C -0.14 -1.20 8.12 37.16 0.30 -0.90 16 21 C -0.18 -1.63 7.78 37.16 0.29 -1.34 16 22 C 0.05 0.62 4.82 -3.77 -0.02 0.60 16 23 C 0.06 0.74 5.61 -3.77 -0.02 0.72 16 24 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.04 0.74 7.75 -51.93 -0.40 0.33 16 27 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.07 1.21 8.03 -51.93 -0.42 0.79 16 31 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.09 1.32 6.25 -51.93 -0.32 1.00 16 34 H 0.04 0.56 6.57 -51.93 -0.34 0.22 16 35 H 0.08 0.87 6.06 -51.93 -0.31 0.56 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.46 6.34 -51.93 -0.33 0.13 16 39 H 0.06 0.51 6.28 -51.93 -0.33 0.18 16 40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.56 6.48 -51.93 -0.34 0.22 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 45 H 0.04 0.53 6.48 -51.93 -0.34 0.19 16 46 H 0.08 0.77 6.14 -51.93 -0.32 0.45 16 47 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 48 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 351.31 15.07 5.29 5.29 Total: -1.00 -29.54 351.31 -9.68 -39.22 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -9.05 Total: -3.65 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 0.32 Total: -15.02 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: -1.23 Total: -42.70 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.54 -9.68 -39.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336723053.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.245 kcal (2) G-P(sol) polarization free energy of solvation -29.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds