Wall clock time and date at job start Mon Mar 30 2020 19:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46945 * 2 1 4 4 C 1.52996 * 109.47185 * 239.99581 * 2 1 3 5 5 C 1.50703 * 109.47171 * 65.00087 * 4 2 1 6 6 H 1.08004 * 119.99521 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99893 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00073 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99650 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47558 * 59.99840 * 9 7 5 11 11 H 1.48496 * 109.47128 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47043 * 299.99840 * 9 7 5 13 13 C 1.53006 * 109.47234 * 119.99498 * 2 1 3 14 14 N 1.46898 * 109.47006 * 295.00220 * 13 2 1 15 15 C 1.46955 * 111.00152 * 293.79671 * 14 13 2 16 16 C 1.53056 * 109.36311 * 176.81210 * 15 14 13 17 17 N 1.46959 * 109.36372 * 58.40247 * 16 15 14 18 18 C 1.46898 * 110.99735 * 176.80935 * 17 16 15 19 19 C 1.53003 * 109.46890 * 183.80152 * 18 17 16 20 20 C 1.52997 * 109.47333 * 303.79932 * 18 17 16 21 21 C 1.53002 * 109.47137 * 63.80262 * 18 17 16 22 22 C 1.46955 * 110.88047 * 300.67727 * 17 16 15 23 23 C 1.46960 * 111.00062 * 169.99567 * 14 13 2 24 24 H 1.09002 * 109.47112 * 60.00472 * 1 2 3 25 25 H 1.09006 * 109.47389 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47743 * 299.99957 * 1 2 3 27 27 H 1.09004 * 109.46864 * 184.99545 * 4 2 1 28 28 H 1.08995 * 109.47184 * 304.99824 * 4 2 1 29 29 H 0.97001 * 119.99516 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.47002 * 55.00002 * 13 2 1 31 31 H 1.08993 * 109.46955 * 175.00440 * 13 2 1 32 32 H 1.08996 * 109.48813 * 296.77807 * 15 14 13 33 33 H 1.08997 * 109.48926 * 56.84659 * 15 14 13 34 34 H 1.09002 * 109.49102 * 298.43551 * 16 15 14 35 35 H 1.09001 * 109.48776 * 178.36940 * 16 15 14 36 36 H 1.08990 * 109.47134 * 59.99819 * 19 18 17 37 37 H 1.09000 * 109.46939 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.46956 * 299.99673 * 19 18 17 39 39 H 1.09000 * 109.47331 * 60.00068 * 20 18 17 40 40 H 1.09000 * 109.47273 * 180.02562 * 20 18 17 41 41 H 1.09007 * 109.47153 * 300.00112 * 20 18 17 42 42 H 1.08999 * 109.47112 * 59.99509 * 21 18 17 43 43 H 1.09000 * 109.47148 * 179.97438 * 21 18 17 44 44 H 1.09000 * 109.46796 * 299.99485 * 21 18 17 45 45 H 1.08996 * 109.48813 * 299.35639 * 22 17 16 46 46 H 1.09002 * 109.50479 * 179.29910 * 22 17 16 47 47 H 1.09001 * 109.48962 * 303.15857 * 23 14 13 48 48 H 1.09002 * 109.48474 * 63.22198 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2491 5 6 1.6413 0.0569 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9933 -0.4020 -3.7282 8 7 2.6773 -1.5185 -3.8509 9 14 1.4997 0.5631 -5.2496 10 1 2.0918 1.9235 -5.1866 11 1 1.9946 -0.1370 -6.4620 12 1 0.0198 0.6697 -5.3096 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0376 2.4456 15 6 2.3371 1.3365 2.4913 16 6 1.8465 2.1269 3.7067 17 7 2.1076 1.3535 4.9287 18 6 1.7190 2.1123 6.1250 19 6 2.0921 1.3163 7.3773 20 6 2.4515 3.4554 6.1374 21 6 0.2085 2.3553 6.1064 22 6 1.4219 0.0546 4.8831 23 6 1.9124 -0.7358 3.6677 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3635 0.5138 0.8900 27 1 3.1263 -0.7994 -1.2055 28 1 1.6054 -1.7198 -1.2950 29 1 2.9245 -1.8414 -4.7315 30 1 1.6054 -1.7197 1.2953 31 1 3.1262 -0.7993 1.2057 32 1 3.4124 1.1774 2.5709 33 1 2.1182 1.8955 1.5815 34 1 0.7759 2.3096 3.6138 35 1 2.3749 3.0788 3.7589 36 1 3.1681 1.1432 7.3905 37 1 1.8033 1.8791 8.2649 38 1 1.5702 0.3594 7.3685 39 1 2.1857 4.0225 5.2453 40 1 2.1635 4.0182 7.0253 41 1 3.5277 3.2823 6.1507 42 1 -0.3134 1.3983 6.0976 43 1 -0.0800 2.9179 6.9943 44 1 -0.0573 2.9224 5.2143 45 1 0.3465 0.2137 4.8034 46 1 1.6405 -0.5045 5.7929 47 1 1.3840 -1.6877 3.6155 48 1 2.9830 -0.9184 3.7606 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336723053.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:41:57 Heat of formation + Delta-G solvation = -24.904740 kcal Electronic energy + Delta-G solvation = -21786.392944 eV Core-core repulsion = 18874.849592 eV Total energy + Delta-G solvation = -2911.543352 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.92189 -38.65001 -36.34285 -34.35904 -32.69214 -32.08452 -29.02565 -28.24050 -28.21437 -27.86523 -25.88676 -24.18908 -24.00480 -21.32809 -20.44496 -19.60974 -18.52372 -17.37112 -16.60091 -16.20805 -15.83472 -15.81218 -15.70830 -15.48579 -15.12724 -14.65143 -14.48389 -14.21694 -14.10476 -13.50173 -13.29145 -13.17912 -12.87670 -12.72681 -12.72452 -12.69498 -12.61187 -12.45632 -12.39643 -12.19471 -12.00318 -11.89446 -11.81946 -11.59115 -11.40462 -11.23346 -11.03895 -10.82780 -10.52291 -9.31096 -9.11186 -8.16992 -6.26319 1.40140 1.43087 1.50727 2.42263 2.91025 2.97997 3.16284 3.85777 3.90694 4.00535 4.06834 4.20926 4.26782 4.31492 4.36858 4.45662 4.50588 4.52698 4.58424 4.73532 4.77199 4.82462 4.84938 4.88274 4.89410 4.94983 4.96093 5.01925 5.04224 5.04658 5.08839 5.11997 5.27752 5.29312 5.39114 5.46342 5.49037 5.49902 5.55605 5.80340 5.88936 6.05394 6.10334 6.26310 6.28829 6.34139 6.89335 7.41882 8.95011 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.038483 B = 0.003509 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.414587 B = 7976.431066 C = 8233.286929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.071 4.071 3 H 0.053 0.947 4 C 0.034 3.966 5 C -0.529 4.529 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.074 3.926 14 N -0.535 5.535 15 C 0.055 3.945 16 C 0.063 3.937 17 N -0.536 5.536 18 C 0.097 3.903 19 C -0.135 4.135 20 C -0.139 4.139 21 C -0.176 4.176 22 C 0.061 3.939 23 C 0.055 3.945 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.062 0.938 27 H -0.017 1.017 28 H -0.010 1.010 29 H 0.262 0.738 30 H 0.068 0.932 31 H 0.016 0.984 32 H 0.027 0.973 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.089 0.911 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.049 0.951 45 H 0.041 0.959 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.056 7.622 23.231 24.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.090 4.090 3 H 0.071 0.929 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.079 0.921 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.054 4.054 14 N -0.260 5.260 15 C -0.073 4.073 16 C -0.065 4.065 17 N -0.261 5.261 18 C 0.008 3.992 19 C -0.193 4.193 20 C -0.196 4.196 21 C -0.235 4.235 22 C -0.067 4.067 23 C -0.073 4.073 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.002 0.998 28 H 0.008 0.992 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.112 0.888 47 H 0.101 0.899 48 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.976 7.508 23.125 24.495 hybrid contribution 0.118 -0.044 -1.367 1.373 sum -2.858 7.464 21.758 23.180 Atomic orbital electron populations 1.21440 0.94635 1.00340 1.00250 1.21016 0.96681 0.98384 0.92875 0.92898 1.18997 0.93918 0.94702 0.92736 1.21604 1.34495 1.08583 0.92065 0.92125 1.25956 0.95226 0.96103 1.02652 1.70099 1.40228 1.23004 1.24340 0.85560 0.78963 0.78774 0.78129 1.19233 1.21009 1.19180 1.22015 0.96636 0.97049 0.89699 1.62180 1.57825 1.04101 1.01883 1.22188 0.95676 0.90873 0.98550 1.22141 0.99346 0.96630 0.88372 1.62428 1.57800 1.03856 1.02008 1.21178 0.93362 0.94253 0.90358 1.21860 1.01822 0.99842 0.95756 1.21905 1.00487 0.95003 1.02247 1.22438 0.96711 1.01916 1.02416 1.22173 0.96495 0.90442 0.97544 1.22217 0.98980 0.96899 0.89217 0.94377 0.94509 0.91887 0.99849 0.99153 0.92933 0.91368 0.96604 0.95507 0.90880 0.94187 0.89237 0.92428 0.90915 0.92429 0.92721 0.90837 0.92406 0.92709 0.90905 0.93195 0.94062 0.88785 0.89935 0.95205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.28 8.89 71.98 0.64 -3.64 16 2 C -0.07 -2.99 2.26 -10.79 -0.02 -3.01 16 3 H 0.05 2.26 6.28 -2.38 -0.01 2.24 16 4 C 0.03 1.83 4.45 29.85 0.13 1.96 16 5 C -0.53 -30.42 8.41 25.60 0.22 -30.21 16 6 H 0.06 3.35 7.06 -2.91 -0.02 3.32 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 8 N -0.94 -58.01 13.29 21.45 0.28 -57.72 16 9 Si 0.96 44.96 29.54 68.60 2.03 46.98 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 C 0.07 2.67 4.35 86.31 0.38 3.05 16 14 N -0.54 -16.13 4.16 -895.71 -3.73 -19.86 16 15 C 0.06 1.59 5.42 86.31 0.47 2.06 16 16 C 0.06 1.46 4.83 86.31 0.42 1.87 16 17 N -0.54 -11.23 4.53 -846.20 -3.83 -15.06 16 18 C 0.10 1.59 0.71 3.53 0.00 1.59 16 19 C -0.14 -1.87 8.25 71.98 0.59 -1.27 16 20 C -0.14 -2.06 8.12 71.98 0.58 -1.47 16 21 C -0.18 -2.75 7.78 71.98 0.56 -2.19 16 22 C 0.06 1.28 4.82 86.31 0.42 1.70 16 23 C 0.05 1.39 5.61 86.31 0.48 1.88 16 24 H 0.04 1.58 6.95 -2.39 -0.02 1.57 16 25 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.06 2.18 7.75 -2.39 -0.02 2.16 16 27 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 28 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 29 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 30 H 0.07 2.45 8.03 -2.39 -0.02 2.43 16 31 H 0.02 0.61 8.12 -2.39 -0.02 0.59 16 32 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 2.26 6.25 -2.39 -0.01 2.24 16 34 H 0.04 0.96 6.57 -2.39 -0.02 0.95 16 35 H 0.09 1.87 6.06 -2.39 -0.01 1.85 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.06 0.78 6.34 -2.39 -0.02 0.76 16 39 H 0.05 0.85 6.28 -2.39 -0.01 0.83 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 42 H 0.05 0.90 6.48 -2.39 -0.02 0.89 16 43 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.05 0.88 6.56 -2.39 -0.02 0.86 16 45 H 0.04 0.90 6.48 -2.39 -0.02 0.89 16 46 H 0.09 1.66 6.14 -2.39 -0.01 1.64 16 47 H 0.08 1.96 8.07 -2.39 -0.02 1.94 16 48 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -63.54 351.31 0.97 -62.57 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.89 Total: 10.44 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: 5.33 Total: -27.35 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -7.28 Total: -92.64 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -63.54 0.97 -62.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336723053.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.668 kcal (2) G-P(sol) polarization free energy of solvation -63.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds