Wall clock time and date at job start Mon Mar 30 2020 19:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46875 * 2 1 4 4 C 1.52995 * 109.47390 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46902 * 54.99525 * 4 3 2 6 6 C 1.53003 * 109.46843 * 294.99855 * 4 3 2 7 7 C 1.52996 * 109.47486 * 174.99689 * 4 3 2 8 8 N 1.46902 * 109.47411 * 294.59046 * 7 4 3 9 9 C 1.46898 * 110.99633 * 288.22663 * 8 7 4 10 10 C 1.53245 * 109.33962 * 172.74264 * 9 8 7 11 11 H 1.09003 * 109.62819 * 294.12394 * 10 9 8 12 12 C 1.52999 * 109.63137 * 173.53805 * 10 9 8 13 13 N 1.47083 * 108.51891 * 53.82600 * 10 9 8 14 14 C 1.36938 * 120.88002 * 128.79275 * 13 10 9 15 15 H 1.07998 * 120.00103 * 231.78810 * 14 13 10 16 16 C 1.38817 * 119.99779 * 51.78471 * 14 13 10 17 17 N 1.31614 * 119.99972 * 206.88504 * 16 14 13 18 18 Si 1.86800 * 119.99691 * 26.88670 * 16 14 13 19 19 H 1.48504 * 109.47130 * 94.32808 * 18 16 14 20 20 H 1.48501 * 109.46687 * 214.32581 * 18 16 14 21 21 H 1.48495 * 109.47236 * 334.32680 * 18 16 14 22 22 C 1.47078 * 118.23931 * 308.81938 * 13 10 9 23 23 H 1.09000 * 109.62825 * 170.89373 * 22 13 10 24 24 C 1.53002 * 109.62836 * 291.47361 * 22 13 10 25 25 C 1.46890 * 111.00094 * 163.92301 * 8 7 4 26 26 H 1.09005 * 109.46891 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47863 * 299.99979 * 1 2 3 28 28 H 1.08994 * 109.47388 * 60.00706 * 1 2 3 29 29 H 1.08994 * 109.47561 * 240.00267 * 2 1 3 30 30 H 1.09004 * 109.47250 * 119.99123 * 2 1 3 31 31 H 1.09003 * 109.47330 * 59.99607 * 3 2 1 32 32 H 1.09008 * 109.47080 * 299.99972 * 3 2 1 33 33 H 1.08997 * 109.47125 * 58.16529 * 6 4 3 34 34 H 1.09011 * 109.46797 * 178.16406 * 6 4 3 35 35 H 1.08994 * 109.47076 * 298.15832 * 6 4 3 36 36 H 1.09002 * 109.46768 * 54.59186 * 7 4 3 37 37 H 1.09003 * 109.47304 * 174.59025 * 7 4 3 38 38 H 1.08995 * 109.49412 * 292.70266 * 9 8 7 39 39 H 1.09004 * 109.49645 * 52.78664 * 9 8 7 40 40 H 1.09001 * 109.46561 * 292.76434 * 12 10 9 41 41 H 1.09002 * 109.46696 * 52.76004 * 12 10 9 42 42 H 1.08991 * 109.46877 * 172.76448 * 12 10 9 43 43 H 0.97001 * 120.00288 * 180.02562 * 17 16 14 44 44 H 1.09004 * 109.47139 * 179.03094 * 24 22 13 45 45 H 1.09006 * 109.46975 * 299.03039 * 24 22 13 46 46 H 1.08995 * 109.47055 * 59.02681 * 24 22 13 47 47 H 1.09002 * 109.49307 * 307.21202 * 25 8 7 48 48 H 1.08997 * 109.49616 * 67.26737 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4427 0.0006 5 1 3.9336 0.8530 -0.8409 6 6 4.0793 0.8333 1.3084 7 6 4.0799 2.8796 -0.1251 8 7 3.7003 3.4210 -1.4370 9 6 4.4904 2.8028 -2.5101 10 6 3.9441 3.2562 -3.8682 11 1 2.9369 2.8632 -4.0074 12 6 4.8575 2.7477 -4.9853 13 7 3.9081 4.7264 -3.8901 14 6 4.4716 5.4279 -4.9223 15 1 5.1736 6.2222 -4.7156 16 6 4.1406 5.1181 -6.2343 17 7 4.9950 5.3652 -7.2045 18 14 2.4825 4.3506 -6.6228 19 1 1.5170 5.4176 -6.9899 20 1 2.6290 3.4039 -7.7575 21 1 1.9834 3.6203 -5.4301 22 6 3.2513 5.4231 -2.7736 23 1 3.4440 6.4935 -2.8459 24 6 1.7442 5.1638 -2.8214 25 6 3.8249 4.8844 -1.4587 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3635 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 1.8934 -0.5137 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6765 1.9564 0.8900 32 1 1.6765 1.9564 -0.8901 33 1 3.6894 -0.1791 1.4136 34 1 5.1689 0.8035 1.2951 35 1 3.7428 1.4415 2.1479 36 1 3.6392 3.4917 0.6618 37 1 5.1655 2.8897 -0.0283 38 1 5.5324 3.1085 -2.4168 39 1 4.4210 1.7177 -2.4341 40 1 5.8232 3.2492 -4.9215 41 1 4.9987 1.6722 -4.8779 42 1 4.4013 2.9595 -5.9523 43 1 4.7636 5.1490 -8.1213 44 1 1.2622 5.6671 -1.9832 45 1 1.3389 5.5479 -3.7576 46 1 1.5578 4.0919 -2.7575 47 1 3.2729 5.3089 -0.6201 48 1 4.8762 5.1612 -1.3796 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350330382.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:42:11 Heat of formation + Delta-G solvation = 7.295001 kcal Electronic energy + Delta-G solvation = -22737.867379 eV Core-core repulsion = 19827.720313 eV Total energy + Delta-G solvation = -2910.147067 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.96736 -36.91532 -34.47968 -32.78854 -31.94894 -31.32560 -28.26062 -26.61901 -26.21321 -26.03376 -23.87535 -22.30750 -21.35636 -20.85047 -19.57912 -18.41964 -16.62513 -15.75510 -15.21591 -14.82377 -14.61386 -14.54446 -14.06288 -13.97060 -13.36743 -13.24691 -12.99699 -12.61960 -12.37472 -12.18040 -12.14283 -12.02511 -11.77374 -11.46182 -11.43847 -11.22485 -11.05426 -10.92110 -10.70938 -10.57661 -10.42928 -10.38159 -10.36653 -10.19562 -9.87667 -9.80536 -9.64656 -9.32581 -8.26871 -7.78722 -6.41012 -6.02939 -3.50990 3.40862 3.51807 3.61103 4.32884 4.57767 4.77167 4.97938 5.01594 5.07855 5.22414 5.28954 5.36876 5.44508 5.57851 5.66918 5.73952 5.76651 5.82565 5.84062 5.89267 5.93415 6.02034 6.03511 6.11087 6.15945 6.17385 6.20815 6.26416 6.29029 6.33570 6.47060 6.50696 6.54627 6.58071 6.61875 6.66317 6.79776 6.94189 7.09714 7.22442 7.43080 7.62412 7.68227 8.13024 8.56098 9.10937 9.73971 10.33363 11.11497 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.022360 B = 0.005902 C = 0.005567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.931617 B = 4742.756745 C = 5028.055705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.106 4.106 4 C -0.087 4.087 5 H 0.070 0.930 6 C -0.147 4.147 7 C 0.060 3.940 8 N -0.529 5.529 9 C 0.048 3.952 10 C 0.170 3.830 11 H 0.038 0.962 12 C -0.134 4.134 13 N -0.593 5.593 14 C -0.278 4.278 15 H 0.066 0.934 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.854 3.146 19 H -0.293 1.293 20 H -0.298 1.298 21 H -0.251 1.251 22 C 0.166 3.834 23 H 0.069 0.931 24 C -0.152 4.152 25 C 0.051 3.949 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.026 0.974 38 H 0.029 0.971 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.032 0.968 42 H 0.059 0.941 43 H 0.262 0.738 44 H 0.036 0.964 45 H 0.042 0.958 46 H 0.056 0.944 47 H 0.061 0.939 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.637 -8.707 15.038 17.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.143 4.143 4 C -0.106 4.106 5 H 0.088 0.912 6 C -0.205 4.205 7 C -0.069 4.069 8 N -0.253 5.253 9 C -0.081 4.081 10 C 0.064 3.936 11 H 0.055 0.945 12 C -0.192 4.192 13 N -0.317 5.317 14 C -0.406 4.406 15 H 0.083 0.917 16 C -0.140 4.140 17 N -0.527 5.527 18 Si 0.682 3.318 19 H -0.221 1.221 20 H -0.226 1.226 21 H -0.175 1.175 22 C 0.060 3.940 23 H 0.087 0.913 24 C -0.211 4.211 25 C -0.078 4.078 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.045 0.955 38 H 0.048 0.952 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.051 0.949 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.048 -8.799 14.754 17.906 hybrid contribution -0.079 -0.179 -0.272 0.335 sum -5.128 -8.979 14.482 17.795 Atomic orbital electron populations 1.21762 0.96323 1.01006 1.01779 1.21598 0.95488 0.97798 1.01438 1.21539 0.94366 0.95749 1.02678 1.21144 0.96151 0.95806 0.97531 0.91200 1.21860 1.00510 1.00633 0.97453 1.22134 0.97351 0.95414 0.91968 1.61855 1.55694 1.05397 1.02370 1.22701 0.94876 0.97571 0.92950 1.20803 0.96364 0.85242 0.91184 0.94471 1.21855 1.01350 0.97131 0.98883 1.44390 1.64769 0.99916 1.22660 1.18450 1.20478 1.17991 0.83718 0.91669 1.25810 0.96449 0.95930 0.95834 1.69969 1.33820 1.48449 1.00499 0.87301 0.87409 0.78982 0.78112 1.22058 1.22557 1.17529 1.20764 0.90740 0.95826 0.86696 0.91314 1.22125 0.97940 1.01664 0.99382 1.22568 0.98682 0.87288 0.99295 0.93323 0.93076 0.92636 0.92335 0.92488 0.92872 0.90277 0.92541 0.93184 0.92979 0.91607 0.95542 0.95225 0.92045 0.91285 0.94931 0.92213 0.92774 0.94503 0.93848 0.92452 0.92034 0.95419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 37.16 0.37 -1.12 16 2 C -0.13 -1.31 5.69 -26.73 -0.15 -1.47 16 3 C -0.11 -1.24 4.63 -26.73 -0.12 -1.37 16 4 C -0.09 -1.04 2.40 -90.62 -0.22 -1.25 16 5 H 0.07 0.91 6.46 -51.93 -0.34 0.57 16 6 C -0.15 -1.44 8.99 37.16 0.33 -1.11 16 7 C 0.06 0.80 4.36 -3.82 -0.02 0.79 16 8 N -0.53 -8.66 3.48 -234.32 -0.81 -9.48 16 9 C 0.05 0.87 4.76 -3.70 -0.02 0.86 16 10 C 0.17 3.65 2.05 -67.49 -0.14 3.51 16 11 H 0.04 0.85 6.03 -51.93 -0.31 0.54 16 12 C -0.13 -2.97 7.85 37.16 0.29 -2.68 16 13 N -0.59 -13.86 1.97 -156.99 -0.31 -14.16 16 14 C -0.28 -7.59 8.68 -15.06 -0.13 -7.72 16 15 H 0.07 1.96 8.06 -52.49 -0.42 1.54 16 16 C 0.06 1.75 3.71 -17.43 -0.06 1.69 16 17 N -0.89 -26.32 13.97 55.49 0.78 -25.55 16 18 Si 0.85 21.80 25.52 -169.99 -4.34 17.46 16 19 H -0.29 -7.66 7.11 56.52 0.40 -7.25 16 20 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 21 H -0.25 -6.19 5.29 56.52 0.30 -5.89 16 22 C 0.17 3.36 3.32 -67.49 -0.22 3.13 16 23 H 0.07 1.42 7.95 -51.93 -0.41 1.01 16 24 C -0.15 -2.88 9.21 37.16 0.34 -2.54 16 25 C 0.05 0.88 4.99 -3.70 -0.02 0.86 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.54 6.52 -51.93 -0.34 0.20 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.12 7.64 -51.92 -0.40 0.72 16 33 H 0.06 0.51 6.48 -51.93 -0.34 0.17 16 34 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.84 7.85 -51.93 -0.41 0.43 16 37 H 0.03 0.37 8.06 -51.93 -0.42 -0.05 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 1.01 6.38 -51.93 -0.33 0.68 16 40 H 0.07 1.64 7.67 -51.93 -0.40 1.25 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 1.45 3.91 -51.93 -0.20 1.25 16 43 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.06 1.12 7.06 -51.93 -0.37 0.75 16 47 H 0.06 0.93 7.93 -51.93 -0.41 0.52 16 48 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 348.99 15.07 5.26 5.26 Total: -1.00 -28.24 348.99 -8.60 -36.84 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -9.40 Total: -1.95 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 0.23 Total: -8.42 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.35 Total: -49.19 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.34 Total: 17.46 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.24 -8.60 -36.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350330382.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.136 kcal (2) G-P(sol) polarization free energy of solvation -28.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds