Wall clock time and date at job start Mon Mar 30 2020 19:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46875 * 2 1 4 4 C 1.52995 * 109.47390 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46902 * 54.99525 * 4 3 2 6 6 C 1.53003 * 109.46843 * 294.99855 * 4 3 2 7 7 C 1.52996 * 109.47486 * 174.99689 * 4 3 2 8 8 N 1.46902 * 109.47411 * 294.59046 * 7 4 3 9 9 C 1.46898 * 110.99633 * 288.22663 * 8 7 4 10 10 C 1.53245 * 109.33962 * 172.74264 * 9 8 7 11 11 H 1.09003 * 109.62819 * 294.12394 * 10 9 8 12 12 C 1.52999 * 109.63137 * 173.53805 * 10 9 8 13 13 N 1.47083 * 108.51891 * 53.82600 * 10 9 8 14 14 C 1.36938 * 120.88002 * 128.79275 * 13 10 9 15 15 H 1.07998 * 120.00103 * 231.78810 * 14 13 10 16 16 C 1.38817 * 119.99779 * 51.78471 * 14 13 10 17 17 N 1.31614 * 119.99972 * 206.88504 * 16 14 13 18 18 Si 1.86800 * 119.99691 * 26.88670 * 16 14 13 19 19 H 1.48504 * 109.47130 * 94.32808 * 18 16 14 20 20 H 1.48501 * 109.46687 * 214.32581 * 18 16 14 21 21 H 1.48495 * 109.47236 * 334.32680 * 18 16 14 22 22 C 1.47078 * 118.23931 * 308.81938 * 13 10 9 23 23 H 1.09000 * 109.62825 * 170.89373 * 22 13 10 24 24 C 1.53002 * 109.62836 * 291.47361 * 22 13 10 25 25 C 1.46890 * 111.00094 * 163.92301 * 8 7 4 26 26 H 1.09005 * 109.46891 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47863 * 299.99979 * 1 2 3 28 28 H 1.08994 * 109.47388 * 60.00706 * 1 2 3 29 29 H 1.08994 * 109.47561 * 240.00267 * 2 1 3 30 30 H 1.09004 * 109.47250 * 119.99123 * 2 1 3 31 31 H 1.09003 * 109.47330 * 59.99607 * 3 2 1 32 32 H 1.09008 * 109.47080 * 299.99972 * 3 2 1 33 33 H 1.08997 * 109.47125 * 58.16529 * 6 4 3 34 34 H 1.09011 * 109.46797 * 178.16406 * 6 4 3 35 35 H 1.08994 * 109.47076 * 298.15832 * 6 4 3 36 36 H 1.09002 * 109.46768 * 54.59186 * 7 4 3 37 37 H 1.09003 * 109.47304 * 174.59025 * 7 4 3 38 38 H 1.08995 * 109.49412 * 292.70266 * 9 8 7 39 39 H 1.09004 * 109.49645 * 52.78664 * 9 8 7 40 40 H 1.09001 * 109.46561 * 292.76434 * 12 10 9 41 41 H 1.09002 * 109.46696 * 52.76004 * 12 10 9 42 42 H 1.08991 * 109.46877 * 172.76448 * 12 10 9 43 43 H 0.97001 * 120.00288 * 180.02562 * 17 16 14 44 44 H 1.09004 * 109.47139 * 179.03094 * 24 22 13 45 45 H 1.09006 * 109.46975 * 299.03039 * 24 22 13 46 46 H 1.08995 * 109.47055 * 59.02681 * 24 22 13 47 47 H 1.09002 * 109.49307 * 307.21202 * 25 8 7 48 48 H 1.08997 * 109.49616 * 67.26737 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4427 0.0006 5 1 3.9336 0.8530 -0.8409 6 6 4.0793 0.8333 1.3084 7 6 4.0799 2.8796 -0.1251 8 7 3.7003 3.4210 -1.4370 9 6 4.4904 2.8028 -2.5101 10 6 3.9441 3.2562 -3.8682 11 1 2.9369 2.8632 -4.0074 12 6 4.8575 2.7477 -4.9853 13 7 3.9081 4.7264 -3.8901 14 6 4.4716 5.4279 -4.9223 15 1 5.1736 6.2222 -4.7156 16 6 4.1406 5.1181 -6.2343 17 7 4.9950 5.3652 -7.2045 18 14 2.4825 4.3506 -6.6228 19 1 1.5170 5.4176 -6.9899 20 1 2.6290 3.4039 -7.7575 21 1 1.9834 3.6203 -5.4301 22 6 3.2513 5.4231 -2.7736 23 1 3.4440 6.4935 -2.8459 24 6 1.7442 5.1638 -2.8214 25 6 3.8249 4.8844 -1.4587 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3635 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 1.8934 -0.5137 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6765 1.9564 0.8900 32 1 1.6765 1.9564 -0.8901 33 1 3.6894 -0.1791 1.4136 34 1 5.1689 0.8035 1.2951 35 1 3.7428 1.4415 2.1479 36 1 3.6392 3.4917 0.6618 37 1 5.1655 2.8897 -0.0283 38 1 5.5324 3.1085 -2.4168 39 1 4.4210 1.7177 -2.4341 40 1 5.8232 3.2492 -4.9215 41 1 4.9987 1.6722 -4.8779 42 1 4.4013 2.9595 -5.9523 43 1 4.7636 5.1490 -8.1213 44 1 1.2622 5.6671 -1.9832 45 1 1.3389 5.5479 -3.7576 46 1 1.5578 4.0919 -2.7575 47 1 3.2729 5.3089 -0.6201 48 1 4.8762 5.1612 -1.3796 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350330382.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:42:10 Heat of formation + Delta-G solvation = -8.049391 kcal Electronic energy + Delta-G solvation = -22738.532762 eV Core-core repulsion = 19827.720313 eV Total energy + Delta-G solvation = -2910.812449 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.41761 -38.10384 -35.92813 -34.33138 -33.62480 -32.67653 -30.03222 -27.73633 -27.58938 -27.20280 -25.62387 -23.73130 -22.69051 -22.13630 -20.56312 -20.21029 -18.52128 -17.29710 -16.45288 -16.23211 -16.18208 -15.82097 -15.52952 -15.18705 -14.94427 -14.68750 -14.24890 -14.09871 -13.88189 -13.61110 -13.53326 -13.08967 -13.02826 -12.86599 -12.64407 -12.57515 -12.45161 -12.39879 -12.23463 -12.19387 -11.84629 -11.76406 -11.65492 -11.48017 -11.33227 -11.27298 -11.12414 -10.94318 -10.39044 -9.15667 -8.34501 -8.21578 -5.67396 1.33715 1.41364 1.54235 2.44479 2.99103 3.04990 3.43333 3.84578 4.10402 4.16140 4.20994 4.25947 4.33944 4.48314 4.49581 4.57163 4.58886 4.59932 4.65041 4.73751 4.79508 4.84682 4.86045 4.89624 4.89970 4.92835 4.98032 5.05204 5.13451 5.16856 5.18972 5.24032 5.34774 5.35175 5.36035 5.39176 5.46098 5.56638 5.64378 5.65064 5.74011 5.98658 6.25257 6.30812 6.36665 7.14176 7.66931 8.27196 8.96364 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.022360 B = 0.005902 C = 0.005567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.931617 B = 4742.756745 C = 5028.055705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.100 4.100 4 C -0.083 4.083 5 H 0.059 0.941 6 C -0.141 4.141 7 C 0.061 3.939 8 N -0.529 5.529 9 C 0.061 3.939 10 C 0.167 3.833 11 H 0.033 0.967 12 C -0.129 4.129 13 N -0.604 5.604 14 C -0.267 4.267 15 H 0.024 0.976 16 C 0.026 3.974 17 N -0.931 5.931 18 Si 0.909 3.091 19 H -0.300 1.300 20 H -0.300 1.300 21 H -0.237 1.237 22 C 0.157 3.843 23 H 0.056 0.944 24 C -0.140 4.140 25 C 0.061 3.939 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.024 0.976 38 H 0.014 0.986 39 H 0.083 0.917 40 H 0.041 0.959 41 H 0.068 0.932 42 H 0.035 0.965 43 H 0.262 0.738 44 H 0.069 0.931 45 H 0.021 0.979 46 H 0.053 0.947 47 H 0.092 0.908 48 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.089 -10.458 17.753 21.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.138 4.138 4 C -0.102 4.102 5 H 0.077 0.923 6 C -0.199 4.199 7 C -0.066 4.066 8 N -0.253 5.253 9 C -0.068 4.068 10 C 0.062 3.938 11 H 0.050 0.950 12 C -0.187 4.187 13 N -0.329 5.329 14 C -0.397 4.397 15 H 0.041 0.959 16 C -0.174 4.174 17 N -0.573 5.573 18 Si 0.737 3.263 19 H -0.228 1.228 20 H -0.227 1.227 21 H -0.160 1.160 22 C 0.051 3.949 23 H 0.074 0.926 24 C -0.199 4.199 25 C -0.069 4.069 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.043 0.957 38 H 0.033 0.967 39 H 0.102 0.898 40 H 0.060 0.940 41 H 0.087 0.913 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.041 0.959 46 H 0.072 0.928 47 H 0.110 0.890 48 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -6.517 -10.565 17.512 21.465 hybrid contribution 0.430 0.396 -1.043 1.196 sum -6.088 -10.169 16.468 20.290 Atomic orbital electron populations 1.21757 0.95960 1.01590 1.01532 1.21574 0.95807 0.96951 1.01730 1.21464 0.94146 0.96403 1.01787 1.21110 0.96234 0.94516 0.98365 0.92289 1.21809 1.00597 1.01158 0.96348 1.22222 0.97441 0.96598 0.90355 1.61856 1.55270 1.04707 1.03443 1.22459 0.93841 0.98826 0.91695 1.20840 0.95990 0.83927 0.93016 0.94985 1.21777 0.99714 0.99260 0.97966 1.44500 1.65171 1.00793 1.22479 1.18218 1.19387 1.17029 0.85035 0.95853 1.26196 0.98628 0.96946 0.95592 1.70059 1.35410 1.50947 1.00857 0.86426 0.83660 0.78046 0.78194 1.22846 1.22744 1.16037 1.20925 0.91792 0.95173 0.86997 0.92582 1.21978 0.96627 1.01591 0.99673 1.22418 0.98011 0.88066 0.98368 0.92382 0.92432 0.93771 0.93072 0.91135 0.92159 0.92676 0.91537 0.93058 0.92124 0.90154 0.95740 0.96745 0.89846 0.93986 0.91328 0.94645 0.92834 0.91220 0.95935 0.92805 0.88990 0.96856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.91 71.98 0.71 -1.87 16 2 C -0.12 -2.21 5.69 30.59 0.17 -2.03 16 3 C -0.10 -2.05 4.63 30.59 0.14 -1.91 16 4 C -0.08 -1.71 2.40 -10.80 -0.03 -1.73 16 5 H 0.06 1.35 6.46 -2.38 -0.02 1.33 16 6 C -0.14 -2.26 8.99 71.98 0.65 -1.61 16 7 C 0.06 1.46 4.36 86.30 0.38 1.84 16 8 N -0.53 -16.04 3.48 -895.26 -3.11 -19.15 16 9 C 0.06 2.11 4.76 86.39 0.41 2.53 16 10 C 0.17 7.05 2.05 44.96 0.09 7.14 16 11 H 0.03 1.42 6.03 -2.39 -0.01 1.40 16 12 C -0.13 -5.69 7.85 71.98 0.56 -5.12 16 13 N -0.60 -28.36 1.97 -650.61 -1.28 -29.64 16 14 C -0.27 -15.08 8.68 84.03 0.73 -14.35 16 15 H 0.02 1.51 8.06 -2.91 -0.02 1.49 16 16 C 0.03 1.49 3.71 84.86 0.31 1.80 16 17 N -0.93 -57.11 13.97 21.65 0.30 -56.80 16 18 Si 0.91 45.86 25.52 68.60 1.75 47.61 16 19 H -0.30 -15.41 7.11 99.48 0.71 -14.70 16 20 H -0.30 -15.12 7.11 99.48 0.71 -14.42 16 21 H -0.24 -11.27 5.29 99.48 0.53 -10.74 16 22 C 0.16 6.20 3.32 44.96 0.15 6.35 16 23 H 0.06 2.33 7.95 -2.39 -0.02 2.31 16 24 C -0.14 -5.01 9.21 71.98 0.66 -4.35 16 25 C 0.06 1.97 4.99 86.39 0.43 2.40 16 26 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.08 6.52 -2.39 -0.02 1.07 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.41 7.64 -2.38 -0.02 1.39 16 33 H 0.07 0.95 6.48 -2.39 -0.02 0.93 16 34 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 1.72 7.85 -2.39 -0.02 1.70 16 37 H 0.02 0.61 8.06 -2.39 -0.02 0.59 16 38 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.08 2.53 6.38 -2.38 -0.02 2.52 16 40 H 0.04 2.03 7.67 -2.39 -0.02 2.02 16 41 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.03 1.72 3.91 -2.39 -0.01 1.71 16 43 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 45 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 46 H 0.05 1.97 7.06 -2.39 -0.02 1.95 16 47 H 0.09 2.46 7.93 -2.39 -0.02 2.44 16 48 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -62.50 348.99 3.74 -58.76 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.70 Total: 10.15 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: 5.38 Total: -10.92 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -4.09 Total: -105.60 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.75 Total: 47.61 kcal Total: -62.50 3.74 -58.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350330382.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.710 kcal (2) G-P(sol) polarization free energy of solvation -62.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds