Wall clock time and date at job start Mon Mar 30 2020 19:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.46857 * 2 1 4 4 C 1.53002 * 109.47081 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46880 * 304.99622 * 4 3 2 6 6 C 1.53000 * 109.47235 * 64.99590 * 4 3 2 7 7 C 1.53001 * 109.47243 * 185.00011 * 4 3 2 8 8 N 1.46905 * 109.47285 * 175.51317 * 7 4 3 9 9 C 1.46898 * 110.99936 * 168.84117 * 8 7 4 10 10 C 1.52782 * 109.42266 * 187.11497 * 9 8 7 11 11 H 1.08995 * 109.45780 * 66.17323 * 10 9 8 12 12 C 1.53001 * 109.55741 * 186.61191 * 10 9 8 13 13 N 1.47081 * 108.76210 * 306.42171 * 10 9 8 14 14 C 1.36937 * 120.88387 * 231.12340 * 13 10 9 15 15 H 1.07994 * 120.00085 * 127.94276 * 14 13 10 16 16 C 1.38810 * 119.99588 * 307.94330 * 14 13 10 17 17 N 1.31625 * 120.00341 * 340.93705 * 16 14 13 18 18 Si 1.86801 * 119.99836 * 160.94165 * 16 14 13 19 19 H 1.48506 * 109.47076 * 269.99439 * 18 16 14 20 20 H 1.48496 * 109.47438 * 29.99930 * 18 16 14 21 21 H 1.48501 * 109.47289 * 150.00214 * 18 16 14 22 22 C 1.47083 * 118.23664 * 50.85291 * 13 10 9 23 23 H 1.09006 * 109.62585 * 68.99451 * 22 13 10 24 24 C 1.53003 * 109.62970 * 189.37635 * 22 13 10 25 25 C 1.46895 * 110.99567 * 293.14152 * 8 7 4 26 26 H 1.08995 * 109.47613 * 60.00460 * 1 2 3 27 27 H 1.09005 * 109.47426 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47635 * 299.99805 * 1 2 3 29 29 H 1.08999 * 109.47635 * 240.00195 * 2 1 3 30 30 H 1.09004 * 109.47740 * 119.99669 * 2 1 3 31 31 H 1.08994 * 109.47468 * 60.00018 * 3 2 1 32 32 H 1.08998 * 109.47117 * 299.99561 * 3 2 1 33 33 H 1.09001 * 109.47343 * 182.18656 * 6 4 3 34 34 H 1.08994 * 109.47533 * 302.18819 * 6 4 3 35 35 H 1.08999 * 109.47138 * 62.19353 * 6 4 3 36 36 H 1.09001 * 109.47303 * 55.51037 * 7 4 3 37 37 H 1.09000 * 109.46960 * 295.51165 * 7 4 3 38 38 H 1.09003 * 109.49140 * 307.21542 * 9 8 7 39 39 H 1.09000 * 109.49593 * 67.26501 * 9 8 7 40 40 H 1.09002 * 109.46930 * 187.63489 * 12 10 9 41 41 H 1.09001 * 109.46863 * 307.63583 * 12 10 9 42 42 H 1.08997 * 109.46942 * 67.63508 * 12 10 9 43 43 H 0.96996 * 119.99968 * 175.08907 * 17 16 14 44 44 H 1.08996 * 109.46802 * 59.99646 * 24 22 13 45 45 H 1.08997 * 109.47232 * 180.02562 * 24 22 13 46 46 H 1.09011 * 109.46924 * 300.00101 * 24 22 13 47 47 H 1.09003 * 109.49602 * 52.78660 * 25 8 7 48 48 H 1.09001 * 109.49544 * 292.70543 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9335 0.8531 0.8410 6 6 4.0794 0.8331 -1.3082 7 6 4.0799 2.8796 0.1251 8 7 5.5450 2.8716 0.2325 9 6 6.0907 4.2279 0.0893 10 6 7.6158 4.1582 0.0289 11 1 7.9199 3.6461 -0.8840 12 6 8.1943 5.5745 0.0457 13 7 8.1019 3.4120 1.1994 14 6 9.0835 3.9271 2.0033 15 1 8.9323 3.9844 3.0710 16 6 10.2729 4.3756 1.4457 17 7 10.6246 3.9813 0.2401 18 14 11.3746 5.5388 2.4063 19 1 10.9936 6.9425 2.1062 20 1 11.2163 5.2830 3.8604 21 1 12.7899 5.3160 2.0157 22 6 7.5016 2.1004 1.4870 23 1 7.7975 1.3859 0.7188 24 6 7.9743 1.6079 2.8563 25 6 5.9769 2.2538 1.4933 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 5.1687 0.7975 -1.2924 34 1 3.6844 -0.1770 -1.4165 35 1 3.7481 1.4447 -2.1475 36 1 3.6527 3.3402 1.0159 37 1 3.7833 3.4488 -0.7559 38 1 5.7093 4.6786 -0.8270 39 1 5.7903 4.8331 0.9446 40 1 9.2686 5.5303 -0.1334 41 1 7.7200 6.1700 -0.7344 42 1 8.0064 6.0321 1.0170 43 1 11.4186 4.3494 -0.1782 44 1 7.6713 2.3207 3.6232 45 1 7.5283 0.6359 3.0666 46 1 9.0605 1.5162 2.8543 47 1 5.5130 1.2727 1.5953 48 1 5.6784 2.8863 2.3293 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350330383.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:42:15 Heat of formation + Delta-G solvation = 4.231858 kcal Electronic energy + Delta-G solvation = -22247.425869 eV Core-core repulsion = 19337.145975 eV Total energy + Delta-G solvation = -2910.279894 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -38.74884 -36.85846 -34.55492 -32.71765 -32.13184 -30.78119 -27.66482 -26.62171 -26.25050 -25.76341 -24.28739 -22.29374 -20.87452 -20.39238 -19.38962 -19.00093 -16.18819 -15.61745 -15.21579 -14.79210 -14.58597 -14.44324 -14.18244 -13.77616 -13.38568 -13.19964 -12.87801 -12.79696 -12.27518 -12.02427 -11.85923 -11.61491 -11.57918 -11.43646 -11.32877 -11.06969 -10.92700 -10.82806 -10.57654 -10.49341 -10.44496 -10.40969 -10.29856 -10.28764 -9.98908 -9.69672 -9.66974 -9.31130 -8.05958 -7.67724 -6.31894 -5.64717 -3.46436 3.35516 3.44009 3.45171 4.37970 4.49523 4.84663 4.87580 5.03870 5.15532 5.29873 5.33093 5.39913 5.52334 5.59786 5.69134 5.78698 5.81807 5.87919 5.91786 5.94626 6.00795 6.07524 6.17571 6.19423 6.20535 6.26316 6.30862 6.34599 6.43906 6.48721 6.52921 6.56616 6.66398 6.69732 6.80869 6.90214 7.02261 7.20893 7.28389 7.62290 7.66276 7.80086 7.83993 7.94394 8.66373 9.28048 9.81939 10.60367 11.24348 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.037663 B = 0.004319 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.248544 B = 6480.680918 C = 6768.779844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.114 4.114 4 C -0.088 4.088 5 H 0.070 0.930 6 C -0.136 4.136 7 C 0.060 3.940 8 N -0.530 5.530 9 C 0.044 3.956 10 C 0.200 3.800 11 H 0.035 0.965 12 C -0.143 4.143 13 N -0.580 5.580 14 C -0.258 4.258 15 H 0.051 0.949 16 C 0.033 3.967 17 N -0.874 5.874 18 Si 0.880 3.120 19 H -0.284 1.284 20 H -0.276 1.276 21 H -0.290 1.290 22 C 0.172 3.828 23 H 0.031 0.969 24 C -0.130 4.130 25 C 0.048 3.952 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.022 0.978 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.023 0.977 40 H 0.089 0.911 41 H 0.020 0.980 42 H 0.045 0.955 43 H 0.253 0.747 44 H 0.047 0.953 45 H 0.034 0.966 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.062 -4.683 -1.017 15.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.107 4.107 5 H 0.088 0.912 6 C -0.193 4.193 7 C -0.069 4.069 8 N -0.254 5.254 9 C -0.085 4.085 10 C 0.094 3.906 11 H 0.052 0.948 12 C -0.201 4.201 13 N -0.304 5.304 14 C -0.388 4.388 15 H 0.069 0.931 16 C -0.168 4.168 17 N -0.514 5.514 18 Si 0.709 3.291 19 H -0.210 1.210 20 H -0.201 1.201 21 H -0.217 1.217 22 C 0.066 3.934 23 H 0.049 0.951 24 C -0.188 4.188 25 C -0.081 4.081 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.041 0.959 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.041 0.959 40 H 0.107 0.893 41 H 0.039 0.961 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.053 0.947 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -14.670 -4.988 -1.480 15.566 hybrid contribution 0.206 1.266 1.041 1.652 sum -14.465 -3.722 -0.439 14.942 Atomic orbital electron populations 1.21780 0.96310 1.01263 1.01590 1.21570 0.95305 0.97238 1.02146 1.21637 0.95444 0.96515 1.01606 1.21167 0.93841 0.96436 0.99245 0.91210 1.21723 1.02494 0.99005 0.96093 1.22140 0.89001 0.96058 0.99656 1.61873 1.07278 1.20859 1.35386 1.22759 0.99315 0.87794 0.98655 1.20166 0.87240 0.92232 0.90956 0.94768 1.22011 1.04275 0.95056 0.98797 1.44033 1.41986 1.14451 1.29968 1.18700 0.92209 1.37584 0.90277 0.93142 1.25481 0.95563 0.99235 0.96551 1.70176 1.25070 1.40473 1.15705 0.86672 0.80157 0.81855 0.80434 1.21010 1.20088 1.21657 1.20534 0.88844 0.89191 0.94817 0.95135 1.21707 1.02091 0.97954 0.97082 1.22713 0.98790 0.97500 0.89130 0.92913 0.93046 0.92973 0.91693 0.92198 0.92457 0.92193 0.91251 0.93673 0.93492 0.95943 0.91632 0.92499 0.95867 0.89292 0.96098 0.93560 0.93707 0.93416 0.94679 0.91637 0.92080 0.95843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.15 0.37 -0.87 16 2 C -0.13 -1.17 5.69 -26.73 -0.15 -1.33 16 3 C -0.11 -1.20 4.68 -26.73 -0.13 -1.32 16 4 C -0.09 -1.11 2.32 -90.62 -0.21 -1.32 16 5 H 0.07 0.94 6.26 -51.93 -0.33 0.62 16 6 C -0.14 -1.74 8.86 37.16 0.33 -1.41 16 7 C 0.06 0.88 4.36 -3.82 -0.02 0.87 16 8 N -0.53 -9.61 4.09 -234.61 -0.96 -10.57 16 9 C 0.04 0.87 4.88 -3.94 -0.02 0.85 16 10 C 0.20 4.69 3.11 -67.73 -0.21 4.48 16 11 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 12 C -0.14 -3.32 7.93 37.16 0.29 -3.02 16 13 N -0.58 -14.41 2.83 -157.27 -0.44 -14.85 16 14 C -0.26 -6.87 6.79 -15.06 -0.10 -6.97 16 15 H 0.05 1.37 7.13 -52.49 -0.37 1.00 16 16 C 0.03 0.90 3.36 -17.43 -0.06 0.84 16 17 N -0.87 -24.78 11.64 55.49 0.65 -24.13 16 18 Si 0.88 21.04 29.60 -169.99 -5.03 16.01 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 C 0.17 3.78 3.66 -67.49 -0.25 3.53 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 24 C -0.13 -2.61 8.18 37.16 0.30 -2.30 16 25 C 0.05 0.90 4.76 -3.70 -0.02 0.88 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.61 6.52 -51.93 -0.34 0.27 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.05 7.80 -51.93 -0.40 0.65 16 34 H 0.04 0.51 6.46 -51.93 -0.34 0.17 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.02 0.34 8.11 -51.93 -0.42 -0.09 16 37 H 0.07 0.94 7.95 -51.93 -0.41 0.52 16 38 H 0.06 1.03 7.98 -51.93 -0.41 0.62 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.09 2.29 4.90 -51.93 -0.25 2.03 16 41 H 0.02 0.41 8.13 -51.93 -0.42 -0.01 16 42 H 0.05 1.08 7.67 -51.93 -0.40 0.69 16 43 H 0.25 6.93 8.32 -40.82 -0.34 6.60 16 44 H 0.05 0.96 7.60 -51.93 -0.39 0.56 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.06 1.44 7.65 -51.92 -0.40 1.04 16 47 H 0.06 1.02 6.14 -51.93 -0.32 0.71 16 48 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 354.28 15.07 5.34 5.34 Total: -1.00 -27.63 354.28 -9.74 -37.37 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -9.42 Total: -2.06 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 0.14 Total: -7.10 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.76 Total: -49.56 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.63 -9.74 -37.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350330383.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.601 kcal (2) G-P(sol) polarization free energy of solvation -27.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds