Wall clock time and date at job start Mon Mar 30 2020 19:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.46857 * 2 1 4 4 C 1.53002 * 109.47081 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46880 * 304.99622 * 4 3 2 6 6 C 1.53000 * 109.47235 * 64.99590 * 4 3 2 7 7 C 1.53001 * 109.47243 * 185.00011 * 4 3 2 8 8 N 1.46905 * 109.47285 * 175.51317 * 7 4 3 9 9 C 1.46898 * 110.99936 * 168.84117 * 8 7 4 10 10 C 1.52782 * 109.42266 * 187.11497 * 9 8 7 11 11 H 1.08995 * 109.45780 * 66.17323 * 10 9 8 12 12 C 1.53001 * 109.55741 * 186.61191 * 10 9 8 13 13 N 1.47081 * 108.76210 * 306.42171 * 10 9 8 14 14 C 1.36937 * 120.88387 * 231.12340 * 13 10 9 15 15 H 1.07994 * 120.00085 * 127.94276 * 14 13 10 16 16 C 1.38810 * 119.99588 * 307.94330 * 14 13 10 17 17 N 1.31625 * 120.00341 * 340.93705 * 16 14 13 18 18 Si 1.86801 * 119.99836 * 160.94165 * 16 14 13 19 19 H 1.48506 * 109.47076 * 269.99439 * 18 16 14 20 20 H 1.48496 * 109.47438 * 29.99930 * 18 16 14 21 21 H 1.48501 * 109.47289 * 150.00214 * 18 16 14 22 22 C 1.47083 * 118.23664 * 50.85291 * 13 10 9 23 23 H 1.09006 * 109.62585 * 68.99451 * 22 13 10 24 24 C 1.53003 * 109.62970 * 189.37635 * 22 13 10 25 25 C 1.46895 * 110.99567 * 293.14152 * 8 7 4 26 26 H 1.08995 * 109.47613 * 60.00460 * 1 2 3 27 27 H 1.09005 * 109.47426 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47635 * 299.99805 * 1 2 3 29 29 H 1.08999 * 109.47635 * 240.00195 * 2 1 3 30 30 H 1.09004 * 109.47740 * 119.99669 * 2 1 3 31 31 H 1.08994 * 109.47468 * 60.00018 * 3 2 1 32 32 H 1.08998 * 109.47117 * 299.99561 * 3 2 1 33 33 H 1.09001 * 109.47343 * 182.18656 * 6 4 3 34 34 H 1.08994 * 109.47533 * 302.18819 * 6 4 3 35 35 H 1.08999 * 109.47138 * 62.19353 * 6 4 3 36 36 H 1.09001 * 109.47303 * 55.51037 * 7 4 3 37 37 H 1.09000 * 109.46960 * 295.51165 * 7 4 3 38 38 H 1.09003 * 109.49140 * 307.21542 * 9 8 7 39 39 H 1.09000 * 109.49593 * 67.26501 * 9 8 7 40 40 H 1.09002 * 109.46930 * 187.63489 * 12 10 9 41 41 H 1.09001 * 109.46863 * 307.63583 * 12 10 9 42 42 H 1.08997 * 109.46942 * 67.63508 * 12 10 9 43 43 H 0.96996 * 119.99968 * 175.08907 * 17 16 14 44 44 H 1.08996 * 109.46802 * 59.99646 * 24 22 13 45 45 H 1.08997 * 109.47232 * 180.02562 * 24 22 13 46 46 H 1.09011 * 109.46924 * 300.00101 * 24 22 13 47 47 H 1.09003 * 109.49602 * 52.78660 * 25 8 7 48 48 H 1.09001 * 109.49544 * 292.70543 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9335 0.8531 0.8410 6 6 4.0794 0.8331 -1.3082 7 6 4.0799 2.8796 0.1251 8 7 5.5450 2.8716 0.2325 9 6 6.0907 4.2279 0.0893 10 6 7.6158 4.1582 0.0289 11 1 7.9199 3.6461 -0.8840 12 6 8.1943 5.5745 0.0457 13 7 8.1019 3.4120 1.1994 14 6 9.0835 3.9271 2.0033 15 1 8.9323 3.9844 3.0710 16 6 10.2729 4.3756 1.4457 17 7 10.6246 3.9813 0.2401 18 14 11.3746 5.5388 2.4063 19 1 10.9936 6.9425 2.1062 20 1 11.2163 5.2830 3.8604 21 1 12.7899 5.3160 2.0157 22 6 7.5016 2.1004 1.4870 23 1 7.7975 1.3859 0.7188 24 6 7.9743 1.6079 2.8563 25 6 5.9769 2.2538 1.4933 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 5.1687 0.7975 -1.2924 34 1 3.6844 -0.1770 -1.4165 35 1 3.7481 1.4447 -2.1475 36 1 3.6527 3.3402 1.0159 37 1 3.7833 3.4488 -0.7559 38 1 5.7093 4.6786 -0.8270 39 1 5.7903 4.8331 0.9446 40 1 9.2686 5.5303 -0.1334 41 1 7.7200 6.1700 -0.7344 42 1 8.0064 6.0321 1.0170 43 1 11.4186 4.3494 -0.1782 44 1 7.6713 2.3207 3.6232 45 1 7.5283 0.6359 3.0666 46 1 9.0605 1.5162 2.8543 47 1 5.5130 1.2727 1.5953 48 1 5.6784 2.8863 2.3293 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350330383.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:42:14 Heat of formation + Delta-G solvation = -10.138633 kcal Electronic energy + Delta-G solvation = -22248.049021 eV Core-core repulsion = 19337.145975 eV Total energy + Delta-G solvation = -2910.903046 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.26681 -38.10752 -35.98997 -34.46261 -33.54570 -32.29203 -29.48784 -27.84705 -27.41584 -27.33811 -26.01524 -23.63469 -22.07580 -21.89745 -20.88709 -20.48854 -18.10021 -17.06737 -16.60234 -16.17938 -16.10284 -15.97061 -15.64719 -15.20095 -14.76086 -14.48367 -14.33035 -14.10306 -13.57948 -13.35678 -13.29387 -13.14433 -12.98035 -12.79722 -12.61426 -12.50517 -12.38581 -12.36468 -12.25787 -12.06839 -12.01118 -11.78201 -11.62607 -11.54204 -11.42808 -11.22916 -11.18747 -10.97344 -10.09410 -9.14139 -8.36527 -7.66669 -5.55751 1.43947 1.47364 1.53923 2.50216 3.03646 3.26218 3.60057 3.85633 4.03020 4.15054 4.27004 4.29471 4.34618 4.44573 4.54118 4.56840 4.60851 4.68121 4.73391 4.77398 4.81293 4.86080 4.86568 4.94802 4.96296 4.97503 5.01518 5.03557 5.03980 5.13068 5.24576 5.26936 5.28667 5.38056 5.46548 5.49004 5.53505 5.59713 5.66424 5.71045 5.77503 5.85739 6.28786 6.37710 6.58389 7.26890 7.85033 8.58487 9.17304 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.037663 B = 0.004319 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.248544 B = 6480.680918 C = 6768.779844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.107 4.107 4 C -0.082 4.082 5 H 0.063 0.937 6 C -0.131 4.131 7 C 0.062 3.938 8 N -0.540 5.540 9 C 0.057 3.943 10 C 0.198 3.802 11 H -0.001 1.001 12 C -0.135 4.135 13 N -0.595 5.595 14 C -0.260 4.260 15 H 0.045 0.955 16 C -0.005 4.005 17 N -0.907 5.907 18 Si 0.936 3.064 19 H -0.279 1.279 20 H -0.269 1.269 21 H -0.295 1.295 22 C 0.163 3.837 23 H 0.005 0.995 24 C -0.119 4.119 25 C 0.063 3.937 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.026 0.974 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.019 0.981 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.038 0.962 43 H 0.250 0.750 44 H 0.045 0.955 45 H 0.070 0.930 46 H 0.038 0.962 47 H 0.085 0.915 48 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.320 -4.810 -0.551 17.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.145 4.145 4 C -0.101 4.101 5 H 0.082 0.918 6 C -0.188 4.188 7 C -0.066 4.066 8 N -0.264 5.264 9 C -0.072 4.072 10 C 0.092 3.908 11 H 0.017 0.983 12 C -0.193 4.193 13 N -0.321 5.321 14 C -0.390 4.390 15 H 0.062 0.938 16 C -0.204 4.204 17 N -0.549 5.549 18 Si 0.763 3.237 19 H -0.206 1.206 20 H -0.194 1.194 21 H -0.221 1.221 22 C 0.057 3.943 23 H 0.023 0.977 24 C -0.177 4.177 25 C -0.066 4.066 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.037 0.963 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.089 0.911 46 H 0.057 0.943 47 H 0.103 0.897 48 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -16.954 -5.119 -1.002 17.739 hybrid contribution 0.888 1.247 0.861 1.756 sum -16.066 -3.873 -0.141 16.527 Atomic orbital electron populations 1.21764 0.95311 1.01874 1.01861 1.21555 0.96181 0.96345 1.02082 1.21574 0.93457 0.97452 1.02036 1.21123 0.95433 0.94741 0.98790 0.91842 1.21664 1.00599 1.00164 0.96401 1.22223 0.86431 0.97764 1.00160 1.61840 1.09705 1.19764 1.35046 1.22482 0.96458 0.88896 0.99375 1.20109 0.89917 0.91699 0.89057 0.98317 1.21873 1.02789 0.95434 0.99237 1.44314 1.42099 1.15707 1.29957 1.18816 0.92656 1.37280 0.90290 0.93792 1.26020 0.96624 1.00498 0.97217 1.70282 1.25631 1.41764 1.17238 0.85794 0.78197 0.80190 0.79503 1.20563 1.19409 1.22130 1.20699 0.91155 0.87465 0.94940 0.97720 1.21586 1.00451 0.99757 0.95927 1.22481 0.96208 0.98715 0.89238 0.92568 0.92329 0.92797 0.91677 0.92382 0.92168 0.91628 0.94058 0.92103 0.93103 0.95583 0.90782 0.90584 0.96314 0.91969 0.93340 0.94283 0.94079 0.93581 0.91124 0.94319 0.89711 0.96380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.12 -1.99 5.69 30.59 0.17 -1.82 16 3 C -0.11 -1.94 4.68 30.60 0.14 -1.79 16 4 C -0.08 -1.88 2.32 -10.79 -0.03 -1.90 16 5 H 0.06 1.55 6.26 -2.39 -0.01 1.53 16 6 C -0.13 -3.11 8.86 71.98 0.64 -2.47 16 7 C 0.06 1.68 4.36 86.30 0.38 2.06 16 8 N -0.54 -18.90 4.09 -896.18 -3.67 -22.57 16 9 C 0.06 2.21 4.88 86.23 0.42 2.63 16 10 C 0.20 9.41 3.11 44.81 0.14 9.55 16 11 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 12 C -0.14 -6.29 7.93 71.98 0.57 -5.72 16 13 N -0.60 -30.10 2.83 -651.47 -1.84 -31.94 16 14 C -0.26 -14.07 6.79 84.03 0.57 -13.49 16 15 H 0.04 2.42 7.13 -2.91 -0.02 2.40 16 16 C 0.00 -0.25 3.36 84.86 0.28 0.03 16 17 N -0.91 -52.91 11.64 21.65 0.25 -52.65 16 18 Si 0.94 43.78 29.60 68.60 2.03 45.81 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 21 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 22 C 0.16 7.19 3.66 44.96 0.16 7.35 16 23 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 24 C -0.12 -4.73 8.18 71.98 0.59 -4.14 16 25 C 0.06 2.27 4.76 86.38 0.41 2.68 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 1.04 6.52 -2.39 -0.02 1.03 16 30 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.04 1.21 7.80 -2.39 -0.02 1.19 16 34 H 0.06 1.24 6.46 -2.39 -0.02 1.22 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.03 0.71 8.11 -2.39 -0.02 0.69 16 37 H 0.07 1.91 7.95 -2.39 -0.02 1.89 16 38 H 0.08 2.62 7.98 -2.39 -0.02 2.60 16 39 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.06 3.25 4.90 -2.39 -0.01 3.24 16 41 H 0.05 1.92 8.13 -2.39 -0.02 1.90 16 42 H 0.04 1.82 7.67 -2.39 -0.02 1.80 16 43 H 0.25 14.12 8.32 -92.71 -0.77 13.35 16 44 H 0.05 1.81 7.60 -2.39 -0.02 1.80 16 45 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.04 1.71 7.65 -2.38 -0.02 1.69 16 47 H 0.08 2.66 6.14 -2.39 -0.01 2.65 16 48 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -60.26 354.28 2.81 -57.45 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.87 Total: 12.27 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 5.17 Total: -8.37 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -5.26 Total: -107.16 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -60.26 2.81 -57.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350330383.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.312 kcal (2) G-P(sol) polarization free energy of solvation -60.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds