Wall clock time and date at job start Mon Mar 30 2020 19:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47102 * 2 1 4 4 C 1.52998 * 109.47248 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47171 * 54.99855 * 4 3 2 6 6 C 1.52998 * 109.47264 * 294.99937 * 4 3 2 7 7 C 1.52995 * 109.47415 * 174.99992 * 4 3 2 8 8 N 1.46899 * 109.47311 * 179.87957 * 7 4 3 9 9 C 1.46902 * 111.00173 * 50.71608 * 8 7 4 10 10 C 1.52782 * 109.42148 * 187.11326 * 9 8 7 11 11 H 1.09002 * 109.45704 * 66.18276 * 10 9 8 12 12 C 1.52998 * 109.55542 * 186.60815 * 10 9 8 13 13 N 1.47080 * 108.76726 * 306.42412 * 10 9 8 14 14 C 1.36940 * 120.87833 * 231.12453 * 13 10 9 15 15 H 1.07997 * 119.99685 * 127.53720 * 14 13 10 16 16 C 1.38815 * 119.99762 * 307.53364 * 14 13 10 17 17 N 1.31617 * 120.00288 * 345.56631 * 16 14 13 18 18 Si 1.86801 * 119.99657 * 165.56925 * 16 14 13 19 19 H 1.48500 * 109.47154 * 179.97438 * 18 16 14 20 20 H 1.48489 * 109.47216 * 300.00009 * 18 16 14 21 21 H 1.48504 * 109.47202 * 60.00247 * 18 16 14 22 22 C 1.47068 * 118.23610 * 50.85327 * 13 10 9 23 23 H 1.09002 * 109.63247 * 68.99747 * 22 13 10 24 24 C 1.53005 * 109.62922 * 189.37677 * 22 13 10 25 25 C 1.46903 * 111.00138 * 175.01628 * 8 7 4 26 26 H 1.09002 * 109.47117 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47412 * 300.00499 * 1 2 3 28 28 H 1.08995 * 109.46833 * 60.00457 * 1 2 3 29 29 H 1.08999 * 109.47412 * 239.99501 * 2 1 3 30 30 H 1.09004 * 109.47072 * 119.99567 * 2 1 3 31 31 H 1.08999 * 109.47395 * 59.99490 * 3 2 1 32 32 H 1.08995 * 109.46903 * 299.99499 * 3 2 1 33 33 H 1.09005 * 109.47268 * 59.99526 * 6 4 3 34 34 H 1.08999 * 109.47396 * 180.02562 * 6 4 3 35 35 H 1.09007 * 109.46959 * 300.00047 * 6 4 3 36 36 H 1.08994 * 109.47605 * 59.87442 * 7 4 3 37 37 H 1.09010 * 109.46595 * 299.87662 * 7 4 3 38 38 H 1.09004 * 109.48877 * 307.21350 * 9 8 7 39 39 H 1.08999 * 109.49340 * 67.26434 * 9 8 7 40 40 H 1.08995 * 109.47434 * 187.75508 * 12 10 9 41 41 H 1.09007 * 109.47102 * 307.75539 * 12 10 9 42 42 H 1.09002 * 109.47287 * 67.75167 * 12 10 9 43 43 H 0.97001 * 120.00183 * 175.06946 * 17 16 14 44 44 H 1.09009 * 109.46927 * 59.99957 * 24 22 13 45 45 H 1.09002 * 109.47157 * 179.97438 * 24 22 13 46 46 H 1.09000 * 109.47002 * 300.00017 * 24 22 13 47 47 H 1.09002 * 109.49333 * 52.78237 * 25 8 7 48 48 H 1.08997 * 109.51307 * 292.71913 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0795 0.8331 1.3083 7 6 4.0801 2.8795 -0.1251 8 7 5.5491 2.8797 -0.1216 9 6 6.0781 1.9214 -1.1013 10 6 7.5946 1.8208 -0.9456 11 1 7.8317 1.3777 0.0216 12 6 8.1680 0.9526 -2.0674 13 7 8.1691 3.1724 -1.0242 14 6 9.2061 3.4469 -1.8754 15 1 9.1319 4.2719 -2.5684 16 6 10.3526 2.6648 -1.8474 17 7 10.5709 1.8529 -0.8348 18 14 11.5857 2.7648 -3.2470 19 1 12.7145 1.8377 -2.9794 20 1 10.9222 2.3834 -4.5195 21 1 12.1012 4.1534 -3.3544 22 6 7.5963 4.2227 -0.1688 23 1 7.8366 4.0170 0.8744 24 6 8.1713 5.5827 -0.5698 25 6 6.0759 4.2303 -0.3592 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9562 -0.8900 33 1 3.7161 -0.1906 1.3979 34 1 5.1695 0.8336 1.3090 35 1 3.7157 1.4228 2.1499 36 1 3.7146 3.4696 0.7152 37 1 3.7189 3.3129 -1.0578 38 1 5.6280 0.9431 -0.9326 39 1 5.8400 2.2625 -2.1088 40 1 9.2256 0.7677 -1.8793 41 1 7.6336 0.0031 -2.1013 42 1 8.0532 1.4683 -3.0208 43 1 11.3343 1.2546 -0.8486 44 1 7.9238 5.7890 -1.6112 45 1 7.7449 6.3591 0.0653 46 1 9.2546 5.5688 -0.4497 47 1 5.6242 4.9265 0.3475 48 1 5.8383 4.5399 -1.3769 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350330384.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:42:19 Heat of formation + Delta-G solvation = 7.364309 kcal Electronic energy + Delta-G solvation = -22347.627049 eV Core-core repulsion = 19437.482988 eV Total energy + Delta-G solvation = -2910.144061 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -38.83860 -36.83102 -34.55065 -32.86855 -31.80350 -30.88552 -27.67592 -26.65482 -26.23336 -25.66869 -24.28875 -22.33752 -20.90210 -20.38964 -19.34047 -18.91218 -16.16225 -15.68293 -15.21392 -14.73834 -14.66104 -14.43588 -14.14056 -13.69064 -13.44821 -13.10797 -12.98369 -12.75313 -12.27482 -11.96024 -11.83996 -11.62070 -11.55135 -11.41221 -11.31118 -11.02378 -10.90803 -10.76910 -10.72165 -10.48275 -10.43117 -10.41386 -10.27376 -10.13727 -10.05431 -9.67510 -9.64319 -9.27282 -8.03792 -7.66119 -6.28459 -5.64394 -3.47411 3.36392 3.42486 3.44571 4.40703 4.49535 4.84014 4.88432 5.04557 5.18009 5.32302 5.33970 5.39777 5.52617 5.61471 5.70270 5.79547 5.83876 5.87461 5.94949 5.96597 5.99769 6.07762 6.18150 6.19481 6.23350 6.26331 6.32033 6.35378 6.44893 6.48267 6.56478 6.57913 6.67597 6.70307 6.86424 6.95676 7.05804 7.20257 7.28532 7.65629 7.70754 7.82434 7.84787 7.99112 8.66618 9.29523 9.82209 10.60411 11.25908 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.029056 B = 0.004682 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.434473 B = 5978.756384 C = 6504.617630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.113 4.113 4 C -0.094 4.094 5 H 0.072 0.928 6 C -0.138 4.138 7 C 0.061 3.939 8 N -0.530 5.530 9 C 0.038 3.962 10 C 0.202 3.798 11 H 0.034 0.966 12 C -0.147 4.147 13 N -0.580 5.580 14 C -0.255 4.255 15 H 0.050 0.950 16 C 0.031 3.969 17 N -0.877 5.877 18 Si 0.885 3.115 19 H -0.289 1.289 20 H -0.281 1.281 21 H -0.280 1.280 22 C 0.173 3.827 23 H 0.031 0.969 24 C -0.130 4.130 25 C 0.049 3.951 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.065 0.935 37 H 0.021 0.979 38 H 0.065 0.935 39 H 0.021 0.979 40 H 0.095 0.905 41 H 0.018 0.982 42 H 0.043 0.957 43 H 0.254 0.746 44 H 0.047 0.953 45 H 0.034 0.966 46 H 0.065 0.935 47 H 0.057 0.943 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.867 -1.189 1.876 15.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.112 4.112 5 H 0.090 0.910 6 C -0.195 4.195 7 C -0.068 4.068 8 N -0.254 5.254 9 C -0.091 4.091 10 C 0.096 3.904 11 H 0.052 0.948 12 C -0.205 4.205 13 N -0.305 5.305 14 C -0.385 4.385 15 H 0.068 0.932 16 C -0.170 4.170 17 N -0.518 5.518 18 Si 0.714 3.286 19 H -0.215 1.215 20 H -0.207 1.207 21 H -0.206 1.206 22 C 0.066 3.934 23 H 0.049 0.951 24 C -0.188 4.188 25 C -0.080 4.080 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.039 0.961 40 H 0.113 0.887 41 H 0.037 0.963 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.054 0.946 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -14.511 -1.397 2.422 14.778 hybrid contribution 0.292 0.233 -1.579 1.623 sum -14.219 -1.164 0.843 14.292 Atomic orbital electron populations 1.21779 0.96296 1.01273 1.01571 1.21572 0.95318 0.97234 1.02187 1.21625 0.95317 0.96541 1.01599 1.21265 0.94160 0.96406 0.99409 0.91003 1.21750 1.02682 0.98989 0.96058 1.22131 0.89144 0.96160 0.99331 1.61947 1.05182 1.07661 1.50597 1.22885 0.99320 0.94804 0.92092 1.20155 0.86727 0.86603 0.96893 0.94835 1.22087 1.04522 0.95659 0.98228 1.44020 1.37129 1.04381 1.44960 1.18677 0.92104 1.15792 1.11919 0.93233 1.25525 0.95923 0.99698 0.95889 1.70091 1.28996 1.24754 1.27959 0.86686 0.81190 0.77784 0.82977 1.21521 1.20677 1.20556 1.20524 0.88804 0.89702 0.94336 0.95086 1.21711 1.01897 0.95349 0.99882 1.22659 0.98418 0.88889 0.98033 0.93034 0.92908 0.92984 0.92190 0.91672 0.92149 0.92471 0.93646 0.91066 0.93336 0.91607 0.96068 0.91700 0.96101 0.88705 0.96343 0.93788 0.93605 0.93412 0.94650 0.91644 0.92446 0.95753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.13 -1.22 5.69 -26.73 -0.15 -1.37 16 3 C -0.11 -1.21 4.68 -26.73 -0.13 -1.34 16 4 C -0.09 -1.22 1.88 -90.62 -0.17 -1.39 16 5 H 0.07 1.01 6.17 -51.92 -0.32 0.69 16 6 C -0.14 -1.82 8.62 37.16 0.32 -1.50 16 7 C 0.06 0.90 4.59 -3.83 -0.02 0.88 16 8 N -0.53 -9.67 4.03 -234.61 -0.94 -10.61 16 9 C 0.04 0.75 4.18 -3.93 -0.02 0.74 16 10 C 0.20 4.75 3.05 -67.73 -0.21 4.54 16 11 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 12 C -0.15 -3.42 7.93 37.16 0.29 -3.13 16 13 N -0.58 -14.46 2.83 -157.28 -0.45 -14.91 16 14 C -0.25 -6.79 6.80 -15.06 -0.10 -6.89 16 15 H 0.05 1.34 7.11 -52.49 -0.37 0.97 16 16 C 0.03 0.83 3.59 -17.43 -0.06 0.77 16 17 N -0.88 -24.77 11.24 55.49 0.62 -24.14 16 18 Si 0.89 21.06 29.58 -169.99 -5.03 16.03 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.17 3.80 3.66 -67.50 -0.25 3.55 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 24 C -0.13 -2.61 8.18 37.16 0.30 -2.30 16 25 C 0.05 0.94 4.90 -3.70 -0.02 0.92 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.64 6.56 -51.93 -0.34 0.29 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.04 0.53 6.56 -51.93 -0.34 0.19 16 34 H 0.07 1.12 7.12 -51.93 -0.37 0.76 16 35 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.02 0.32 8.13 -51.92 -0.42 -0.10 16 38 H 0.06 1.17 5.40 -51.93 -0.28 0.89 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 2.45 4.75 -51.93 -0.25 2.21 16 41 H 0.02 0.36 8.13 -51.92 -0.42 -0.06 16 42 H 0.04 1.04 7.66 -51.93 -0.40 0.64 16 43 H 0.25 6.95 8.32 -40.82 -0.34 6.61 16 44 H 0.05 0.95 7.61 -51.92 -0.40 0.56 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 1.43 7.65 -51.93 -0.40 1.03 16 47 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 351.79 15.07 5.30 5.30 Total: -1.00 -27.57 351.79 -9.68 -37.25 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -9.36 Total: -1.49 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 0.17 Total: -7.44 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.77 Total: -49.66 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.57 -9.68 -37.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350330384.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.614 kcal (2) G-P(sol) polarization free energy of solvation -27.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds