Wall clock time and date at job start Mon Mar 30 2020 19:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47013 * 2 1 4 4 C 1.52999 * 109.47116 * 184.52266 * 3 2 1 5 5 C 1.53005 * 109.47280 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46997 * 304.51773 * 3 2 1 7 7 N 1.46900 * 109.46952 * 300.00305 * 6 3 2 8 8 C 1.52997 * 109.47444 * 64.51913 * 3 2 1 9 9 N 1.46897 * 109.47128 * 64.87356 * 8 3 2 10 10 C 1.46853 * 110.99585 * 245.49010 * 9 8 3 11 11 C 1.53042 * 109.52011 * 174.16159 * 10 9 8 12 12 C 1.53118 * 109.28204 * 59.17501 * 11 10 9 13 13 C 1.53116 * 109.15884 * 302.34742 * 12 11 10 14 14 H 1.08997 * 109.50423 * 297.70992 * 13 12 11 15 15 C 1.50702 * 109.53406 * 177.61456 * 13 12 11 16 16 H 1.08003 * 120.00030 * 271.95167 * 15 13 12 17 17 C 1.37872 * 120.00006 * 91.95051 * 15 13 12 18 18 N 1.31523 * 119.99836 * 182.02875 * 17 15 13 19 19 Si 1.86794 * 120.00253 * 2.03428 * 17 15 13 20 20 H 1.48505 * 109.47498 * 85.11277 * 19 17 15 21 21 H 1.48505 * 109.47504 * 205.11569 * 19 17 15 22 22 H 1.48505 * 109.47169 * 325.11381 * 19 17 15 23 23 C 1.46845 * 111.00307 * 121.27953 * 9 8 3 24 24 H 1.09002 * 109.46827 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47263 * 300.00132 * 1 2 3 26 26 H 1.08996 * 109.46838 * 60.00462 * 1 2 3 27 27 H 1.08996 * 109.47263 * 239.99868 * 2 1 3 28 28 H 1.09003 * 109.47169 * 119.99328 * 2 1 3 29 29 H 1.09000 * 109.46970 * 299.99623 * 4 3 2 30 30 H 1.08999 * 109.47396 * 59.99733 * 4 3 2 31 31 H 1.09000 * 109.47062 * 299.99874 * 5 4 3 32 32 H 1.08999 * 109.46873 * 59.99719 * 5 4 3 33 33 H 1.08994 * 109.47028 * 179.97438 * 5 4 3 34 34 H 1.08994 * 109.47033 * 180.02562 * 6 3 2 35 35 H 1.09005 * 109.46610 * 59.99828 * 6 3 2 36 36 H 1.00902 * 111.00277 * 56.04512 * 7 6 3 37 37 H 1.00908 * 110.99973 * 179.97438 * 7 6 3 38 38 H 1.09001 * 109.47304 * 184.87455 * 8 3 2 39 39 H 1.09003 * 109.47109 * 304.86826 * 8 3 2 40 40 H 1.09006 * 109.46064 * 294.17091 * 10 9 8 41 41 H 1.08994 * 109.46563 * 54.14631 * 10 9 8 42 42 H 1.09004 * 109.49929 * 299.23236 * 11 10 9 43 43 H 1.09001 * 109.53300 * 179.14028 * 11 10 9 44 44 H 1.08995 * 109.52287 * 182.44195 * 12 11 10 45 45 H 1.09003 * 109.57078 * 62.28302 * 12 11 10 46 46 H 0.96997 * 119.99639 * 180.02562 * 18 17 15 47 47 H 1.08997 * 109.45822 * 305.85050 * 23 9 8 48 48 H 1.08996 * 109.45958 * 65.82328 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5658 1.4440 -0.1137 5 6 4.0757 2.8866 -0.1144 6 6 1.4393 2.1958 -1.1886 7 7 1.8378 1.5354 -2.4388 8 6 1.6249 2.1302 1.3021 9 7 2.2950 1.4785 2.4353 10 6 1.3211 0.8148 3.3115 11 6 2.0615 0.0274 4.3951 12 6 2.9371 0.9857 5.2073 13 6 3.9095 1.6994 4.2642 14 1 4.5661 0.9664 3.7955 15 6 4.7359 2.6877 5.0461 16 1 4.3762 3.6954 5.1934 17 6 5.9511 2.3055 5.5734 18 7 6.6539 3.1559 6.2896 19 14 6.5996 0.5801 5.2707 20 1 7.3154 0.5414 3.9701 21 1 7.5343 0.2040 6.3616 22 1 5.4645 -0.3769 5.2396 23 6 3.1157 2.4384 3.1845 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 3.9937 0.9074 0.7330 30 1 3.8615 0.9541 -1.0414 31 1 3.6477 3.4229 -0.9613 32 1 3.7800 3.3769 0.8131 33 1 5.1627 2.8876 -0.1950 34 1 1.8029 3.2233 -1.1889 35 1 0.3523 2.1946 -1.1076 36 1 1.5688 0.5629 -2.4358 37 1 1.4529 2.0143 -3.2393 38 1 1.9123 3.1811 1.2657 39 1 0.5447 2.0531 1.4254 40 1 0.6834 1.5649 3.7794 41 1 0.7078 0.1332 2.7223 42 1 2.6889 -0.7320 3.9284 43 1 1.3387 -0.4528 5.0547 44 1 3.4993 0.4226 5.9522 45 1 2.3070 1.7219 5.7063 46 1 7.5090 2.8871 6.6602 47 1 3.8056 2.9359 2.5029 48 1 2.4695 3.1807 3.6529 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577051606.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:42:45 Heat of formation + Delta-G solvation = -20.047332 kcal Electronic energy + Delta-G solvation = -22867.876170 eV Core-core repulsion = 19956.543451 eV Total energy + Delta-G solvation = -2911.332719 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.57996 -37.38208 -33.61870 -32.53270 -32.09495 -31.39644 -30.13363 -27.73974 -25.00086 -24.95561 -24.52647 -22.02493 -21.62278 -21.11091 -18.72479 -17.95210 -16.78681 -16.32356 -15.58519 -15.32780 -14.83755 -14.31817 -14.06921 -13.70769 -13.56671 -13.45318 -12.87214 -12.75980 -12.57473 -12.50192 -12.45265 -12.06408 -11.91828 -11.69920 -11.30898 -11.17820 -11.03692 -10.92508 -10.61272 -10.55483 -10.18833 -10.12118 -10.00686 -9.94740 -9.76823 -9.42159 -9.17810 -8.87151 -8.64243 -8.46542 -7.66141 -6.02961 -4.02095 3.35458 3.42915 3.47353 4.27771 4.48408 4.73263 4.91509 5.03024 5.05719 5.28061 5.32071 5.44014 5.53356 5.56289 5.57990 5.62903 5.72699 5.75514 5.85340 5.89290 5.93154 5.98234 6.06566 6.07671 6.22146 6.24844 6.29859 6.40707 6.43354 6.48223 6.51458 6.57572 6.65711 6.72877 6.85573 6.91202 6.94875 6.98063 7.09961 7.37137 7.38715 7.54430 7.67534 7.74935 7.94591 8.58119 9.01767 9.61193 11.10439 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.023139 B = 0.005963 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.791244 B = 4694.436840 C = 5199.344114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.042 4.042 4 C -0.095 4.095 5 C -0.153 4.153 6 C 0.066 3.934 7 N -0.844 5.844 8 C 0.059 3.941 9 N -0.533 5.533 10 C 0.063 3.937 11 C -0.120 4.120 12 C -0.113 4.113 13 C 0.022 3.978 14 H 0.037 0.963 15 C -0.511 4.511 16 H 0.069 0.931 17 C 0.072 3.928 18 N -0.904 5.904 19 Si 0.877 3.123 20 H -0.276 1.276 21 H -0.293 1.293 22 H -0.262 1.262 23 C 0.071 3.929 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.023 0.977 36 H 0.338 0.662 37 H 0.334 0.666 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.023 0.977 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.048 0.952 46 H 0.263 0.737 47 H 0.073 0.927 48 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.554 -5.397 -14.138 19.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.044 4.044 4 C -0.133 4.133 5 C -0.210 4.210 6 C -0.065 4.065 7 N -0.374 5.374 8 C -0.070 4.070 9 N -0.257 5.257 10 C -0.065 4.065 11 C -0.158 4.158 12 C -0.152 4.152 13 C 0.003 3.997 14 H 0.055 0.945 15 C -0.549 4.549 16 H 0.088 0.912 17 C -0.129 4.129 18 N -0.542 5.542 19 Si 0.705 3.295 20 H -0.202 1.202 21 H -0.219 1.219 22 H -0.187 1.187 23 C -0.056 4.056 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.041 0.959 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.041 0.959 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.091 0.909 48 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -11.325 -5.539 -13.981 18.826 hybrid contribution -1.166 -0.327 0.185 1.225 sum -12.492 -5.866 -13.796 19.514 Atomic orbital electron populations 1.21928 0.97099 1.00917 1.01293 1.21508 0.94442 0.96668 1.02345 1.20537 0.96658 0.94567 0.92607 1.21281 0.93236 0.97017 1.01724 1.21904 1.00411 0.97518 1.01180 1.21919 0.96394 0.98442 0.89737 1.58711 1.67990 1.06839 1.03877 1.22166 0.96529 0.96973 0.91310 1.61867 1.22580 1.31844 1.09404 1.22104 0.93381 0.96872 0.94157 1.21673 0.98694 0.98684 0.96705 1.21890 0.97656 0.97105 0.98506 1.19107 0.93490 0.95248 0.91840 0.94508 1.20976 1.02731 0.98479 1.32702 0.91245 1.25027 0.96551 0.96911 0.94446 1.69914 1.13873 1.35384 1.35003 0.86862 0.79000 0.85797 0.77821 1.20203 1.21938 1.18678 1.22392 0.94868 0.92638 0.95690 0.93315 0.92613 0.93505 0.92568 0.90469 0.90903 0.92222 0.93407 0.92393 0.93447 0.91083 0.95917 0.84871 0.85425 0.92518 0.93579 0.95910 0.92015 0.92094 0.93226 0.93107 0.93361 0.92768 0.90893 0.96221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.02 37.16 0.34 -1.19 16 2 C -0.11 -1.28 4.29 -26.73 -0.11 -1.40 16 3 C -0.04 -0.52 0.22 -154.51 -0.03 -0.55 16 4 C -0.10 -1.36 4.62 -26.73 -0.12 -1.48 16 5 C -0.15 -2.23 9.14 37.16 0.34 -1.89 16 6 C 0.07 0.70 4.92 -3.82 -0.02 0.68 16 7 N -0.84 -7.96 8.84 -10.37 -0.09 -8.05 16 8 C 0.06 0.82 3.73 -3.83 -0.01 0.80 16 9 N -0.53 -8.76 2.94 -234.67 -0.69 -9.45 16 10 C 0.06 0.98 4.90 -3.83 -0.02 0.96 16 11 C -0.12 -2.06 6.09 -26.65 -0.16 -2.22 16 12 C -0.11 -2.39 5.14 -26.61 -0.14 -2.53 16 13 C 0.02 0.52 1.83 -91.69 -0.17 0.35 16 14 H 0.04 0.89 5.61 -51.93 -0.29 0.60 16 15 C -0.51 -14.19 8.87 -34.44 -0.31 -14.49 16 16 H 0.07 2.10 8.06 -52.48 -0.42 1.68 16 17 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 18 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 19 Si 0.88 21.89 26.48 -169.99 -4.50 17.38 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 22 H -0.26 -6.27 6.38 56.52 0.36 -5.90 16 23 C 0.07 1.42 4.41 -3.83 -0.02 1.40 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.59 5.58 -51.93 -0.29 0.30 16 26 H 0.05 0.42 6.35 -51.93 -0.33 0.09 16 27 H 0.06 0.61 6.81 -51.93 -0.35 0.26 16 28 H 0.08 1.04 7.02 -51.93 -0.36 0.67 16 29 H 0.07 1.22 7.48 -51.93 -0.39 0.83 16 30 H 0.06 0.84 7.60 -51.93 -0.39 0.45 16 31 H 0.05 0.63 6.43 -51.93 -0.33 0.30 16 32 H 0.06 0.91 4.20 -51.93 -0.22 0.69 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.80 6.43 -51.93 -0.33 0.47 16 35 H 0.02 0.23 6.35 -51.93 -0.33 -0.10 16 36 H 0.34 2.97 7.14 -39.29 -0.28 2.69 16 37 H 0.33 2.57 9.08 -39.29 -0.36 2.21 16 38 H 0.06 0.82 6.12 -51.93 -0.32 0.50 16 39 H 0.05 0.60 5.74 -51.93 -0.30 0.30 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.85 6.49 -51.93 -0.34 0.51 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.05 1.13 7.20 -51.93 -0.37 0.76 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.07 1.49 5.67 -51.93 -0.29 1.20 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 336.13 15.07 5.07 5.07 Total: -1.00 -28.92 336.13 -8.42 -37.34 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -8.44 Total: 4.22 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -0.54 Total: -19.58 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: -0.01 Total: -44.44 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.50 Total: 17.38 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.92 -8.42 -37.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577051606.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.296 kcal (2) G-P(sol) polarization free energy of solvation -28.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds