Wall clock time and date at job start Mon Mar 30 2020 19:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47013 * 2 1 4 4 C 1.52999 * 109.47116 * 184.52266 * 3 2 1 5 5 C 1.53005 * 109.47280 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46997 * 304.51773 * 3 2 1 7 7 N 1.46900 * 109.46952 * 300.00305 * 6 3 2 8 8 C 1.52997 * 109.47444 * 64.51913 * 3 2 1 9 9 N 1.46897 * 109.47128 * 64.87356 * 8 3 2 10 10 C 1.46853 * 110.99585 * 245.49010 * 9 8 3 11 11 C 1.53042 * 109.52011 * 174.16159 * 10 9 8 12 12 C 1.53118 * 109.28204 * 59.17501 * 11 10 9 13 13 C 1.53116 * 109.15884 * 302.34742 * 12 11 10 14 14 H 1.08997 * 109.50423 * 297.70992 * 13 12 11 15 15 C 1.50702 * 109.53406 * 177.61456 * 13 12 11 16 16 H 1.08003 * 120.00030 * 271.95167 * 15 13 12 17 17 C 1.37872 * 120.00006 * 91.95051 * 15 13 12 18 18 N 1.31523 * 119.99836 * 182.02875 * 17 15 13 19 19 Si 1.86794 * 120.00253 * 2.03428 * 17 15 13 20 20 H 1.48505 * 109.47498 * 85.11277 * 19 17 15 21 21 H 1.48505 * 109.47504 * 205.11569 * 19 17 15 22 22 H 1.48505 * 109.47169 * 325.11381 * 19 17 15 23 23 C 1.46845 * 111.00307 * 121.27953 * 9 8 3 24 24 H 1.09002 * 109.46827 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47263 * 300.00132 * 1 2 3 26 26 H 1.08996 * 109.46838 * 60.00462 * 1 2 3 27 27 H 1.08996 * 109.47263 * 239.99868 * 2 1 3 28 28 H 1.09003 * 109.47169 * 119.99328 * 2 1 3 29 29 H 1.09000 * 109.46970 * 299.99623 * 4 3 2 30 30 H 1.08999 * 109.47396 * 59.99733 * 4 3 2 31 31 H 1.09000 * 109.47062 * 299.99874 * 5 4 3 32 32 H 1.08999 * 109.46873 * 59.99719 * 5 4 3 33 33 H 1.08994 * 109.47028 * 179.97438 * 5 4 3 34 34 H 1.08994 * 109.47033 * 180.02562 * 6 3 2 35 35 H 1.09005 * 109.46610 * 59.99828 * 6 3 2 36 36 H 1.00902 * 111.00277 * 56.04512 * 7 6 3 37 37 H 1.00908 * 110.99973 * 179.97438 * 7 6 3 38 38 H 1.09001 * 109.47304 * 184.87455 * 8 3 2 39 39 H 1.09003 * 109.47109 * 304.86826 * 8 3 2 40 40 H 1.09006 * 109.46064 * 294.17091 * 10 9 8 41 41 H 1.08994 * 109.46563 * 54.14631 * 10 9 8 42 42 H 1.09004 * 109.49929 * 299.23236 * 11 10 9 43 43 H 1.09001 * 109.53300 * 179.14028 * 11 10 9 44 44 H 1.08995 * 109.52287 * 182.44195 * 12 11 10 45 45 H 1.09003 * 109.57078 * 62.28302 * 12 11 10 46 46 H 0.96997 * 119.99639 * 180.02562 * 18 17 15 47 47 H 1.08997 * 109.45822 * 305.85050 * 23 9 8 48 48 H 1.08996 * 109.45958 * 65.82328 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5658 1.4440 -0.1137 5 6 4.0757 2.8866 -0.1144 6 6 1.4393 2.1958 -1.1886 7 7 1.8378 1.5354 -2.4388 8 6 1.6249 2.1302 1.3021 9 7 2.2950 1.4785 2.4353 10 6 1.3211 0.8148 3.3115 11 6 2.0615 0.0274 4.3951 12 6 2.9371 0.9857 5.2073 13 6 3.9095 1.6994 4.2642 14 1 4.5661 0.9664 3.7955 15 6 4.7359 2.6877 5.0461 16 1 4.3762 3.6954 5.1934 17 6 5.9511 2.3055 5.5734 18 7 6.6539 3.1559 6.2896 19 14 6.5996 0.5801 5.2707 20 1 7.3154 0.5414 3.9701 21 1 7.5343 0.2040 6.3616 22 1 5.4645 -0.3769 5.2396 23 6 3.1157 2.4384 3.1845 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 3.9937 0.9074 0.7330 30 1 3.8615 0.9541 -1.0414 31 1 3.6477 3.4229 -0.9613 32 1 3.7800 3.3769 0.8131 33 1 5.1627 2.8876 -0.1950 34 1 1.8029 3.2233 -1.1889 35 1 0.3523 2.1946 -1.1076 36 1 1.5688 0.5629 -2.4358 37 1 1.4529 2.0143 -3.2393 38 1 1.9123 3.1811 1.2657 39 1 0.5447 2.0531 1.4254 40 1 0.6834 1.5649 3.7794 41 1 0.7078 0.1332 2.7223 42 1 2.6889 -0.7320 3.9284 43 1 1.3387 -0.4528 5.0547 44 1 3.4993 0.4226 5.9522 45 1 2.3070 1.7219 5.7063 46 1 7.5090 2.8871 6.6602 47 1 3.8056 2.9359 2.5029 48 1 2.4695 3.1807 3.6529 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577051606.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:42:44 Heat of formation + Delta-G solvation = -38.733963 kcal Electronic energy + Delta-G solvation = -22868.686483 eV Core-core repulsion = 19956.543451 eV Total energy + Delta-G solvation = -2912.143032 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.76346 -38.71425 -35.27946 -34.00903 -33.14965 -32.69061 -31.79824 -28.83961 -26.91008 -26.09243 -25.55444 -23.42701 -22.76698 -22.61247 -20.38253 -19.10513 -18.78447 -17.22765 -16.87469 -16.57907 -16.03423 -15.91069 -15.30827 -15.14797 -14.79663 -14.63792 -14.57234 -14.22020 -14.06720 -13.67607 -13.52524 -13.40876 -12.98828 -12.93181 -12.80637 -12.69200 -12.53282 -12.25902 -12.12584 -11.81634 -11.71233 -11.57993 -11.34439 -11.16261 -11.10711 -10.97367 -10.91790 -10.70532 -10.58764 -9.37732 -9.00979 -8.28019 -6.30822 1.35638 1.36391 1.48390 2.36471 3.01790 3.13969 3.84807 3.93016 4.07594 4.09058 4.19511 4.21742 4.30468 4.41661 4.50321 4.58152 4.63609 4.66595 4.70544 4.72232 4.76026 4.81571 4.84044 4.87209 4.92262 4.96878 5.07353 5.10891 5.21836 5.24588 5.27320 5.28609 5.37147 5.46586 5.49433 5.58193 5.61186 5.66582 5.68560 5.80315 5.86163 6.23214 6.34994 6.42731 6.47674 6.74986 6.77773 7.35557 8.89161 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.023139 B = 0.005963 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.791244 B = 4694.436840 C = 5199.344114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.036 4.036 4 C -0.089 4.089 5 C -0.149 4.149 6 C 0.073 3.927 7 N -0.850 5.850 8 C 0.059 3.941 9 N -0.532 5.532 10 C 0.063 3.937 11 C -0.112 4.112 12 C -0.111 4.111 13 C 0.022 3.978 14 H 0.030 0.970 15 C -0.512 4.512 16 H 0.027 0.973 17 C 0.015 3.985 18 N -0.952 5.952 19 Si 0.940 3.060 20 H -0.271 1.271 21 H -0.290 1.290 22 H -0.243 1.243 23 C 0.085 3.915 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.036 0.964 34 H 0.062 0.938 35 H 0.036 0.964 36 H 0.344 0.656 37 H 0.346 0.654 38 H 0.047 0.953 39 H 0.064 0.936 40 H 0.023 0.977 41 H 0.092 0.908 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.035 0.965 45 H 0.039 0.961 46 H 0.264 0.736 47 H 0.061 0.939 48 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.688 -7.636 -16.195 23.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C -0.037 4.037 4 C -0.127 4.127 5 C -0.206 4.206 6 C -0.058 4.058 7 N -0.382 5.382 8 C -0.069 4.069 9 N -0.256 5.256 10 C -0.064 4.064 11 C -0.150 4.150 12 C -0.150 4.150 13 C 0.002 3.998 14 H 0.048 0.952 15 C -0.551 4.551 16 H 0.046 0.954 17 C -0.182 4.182 18 N -0.593 5.593 19 Si 0.765 3.235 20 H -0.196 1.196 21 H -0.217 1.217 22 H -0.167 1.167 23 C -0.043 4.043 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -13.491 -7.785 -16.063 22.375 hybrid contribution -0.527 0.472 0.809 1.074 sum -14.018 -7.313 -15.254 21.970 Atomic orbital electron populations 1.21874 0.95464 1.01733 1.01611 1.21446 0.95756 0.95452 1.01879 1.20463 0.95177 0.95578 0.92519 1.21200 0.94812 0.96090 1.00614 1.21863 0.99831 0.98054 1.00889 1.21771 0.96946 0.97669 0.89418 1.58649 1.68358 1.07328 1.03821 1.22239 0.97262 0.96490 0.90894 1.61821 1.23344 1.30834 1.09587 1.22179 0.93073 0.97135 0.94046 1.21615 0.98656 0.97742 0.96990 1.21756 0.97573 0.97524 0.98117 1.19055 0.93803 0.94289 0.92604 0.95192 1.21278 1.03366 0.97734 1.32685 0.95428 1.25860 0.96921 1.01115 0.94314 1.70060 1.14604 1.37750 1.36866 0.85850 0.78842 0.81091 0.77747 1.19632 1.21667 1.16680 1.22028 0.94836 0.92585 0.94821 0.92317 0.93069 0.92350 0.91764 0.92291 0.93653 0.91820 0.91942 0.94027 0.94494 0.91916 0.94546 0.84204 0.84060 0.93480 0.91784 0.95848 0.88967 0.92153 0.90427 0.94568 0.94194 0.92691 0.92041 0.97548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.02 71.98 0.65 -1.69 16 2 C -0.11 -2.12 4.29 30.60 0.13 -1.99 16 3 C -0.04 -0.80 0.22 -52.18 -0.01 -0.81 16 4 C -0.09 -2.46 4.62 30.60 0.14 -2.31 16 5 C -0.15 -4.31 9.14 71.98 0.66 -3.65 16 6 C 0.07 1.33 4.92 86.31 0.42 1.76 16 7 N -0.85 -13.40 8.84 -186.71 -1.65 -15.05 16 8 C 0.06 1.53 3.73 86.30 0.32 1.85 16 9 N -0.53 -16.77 2.94 -896.36 -2.64 -19.41 16 10 C 0.06 1.80 4.90 86.33 0.42 2.22 16 11 C -0.11 -3.57 6.09 30.65 0.19 -3.38 16 12 C -0.11 -4.64 5.14 30.67 0.16 -4.48 16 13 C 0.02 1.02 1.83 -11.49 -0.02 1.00 16 14 H 0.03 1.45 5.61 -2.39 -0.01 1.43 16 15 C -0.51 -29.64 8.87 25.60 0.23 -29.42 16 16 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 17 C 0.01 0.86 5.47 84.65 0.46 1.32 16 18 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 19 Si 0.94 45.74 26.48 68.60 1.82 47.56 16 20 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 22 H -0.24 -10.99 6.38 99.48 0.63 -10.36 16 23 C 0.08 3.44 4.41 86.33 0.38 3.83 16 24 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.05 0.85 5.58 -2.39 -0.01 0.84 16 26 H 0.06 0.79 6.35 -2.39 -0.02 0.77 16 27 H 0.06 1.18 6.81 -2.39 -0.02 1.16 16 28 H 0.06 1.40 7.02 -2.39 -0.02 1.39 16 29 H 0.04 1.49 7.48 -2.39 -0.02 1.48 16 30 H 0.06 1.69 7.60 -2.39 -0.02 1.67 16 31 H 0.06 1.59 6.43 -2.39 -0.02 1.58 16 32 H 0.04 1.33 4.20 -2.39 -0.01 1.32 16 33 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.27 6.43 -2.39 -0.02 1.25 16 35 H 0.04 0.58 6.35 -2.38 -0.02 0.57 16 36 H 0.34 4.83 7.14 -89.69 -0.64 4.19 16 37 H 0.35 4.22 9.08 -89.69 -0.81 3.40 16 38 H 0.05 1.32 6.12 -2.39 -0.01 1.31 16 39 H 0.06 1.45 5.74 -2.39 -0.01 1.44 16 40 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 41 H 0.09 2.14 6.49 -2.39 -0.02 2.12 16 42 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 43 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.04 1.58 7.20 -2.39 -0.02 1.56 16 45 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.26 15.80 8.31 -92.71 -0.77 15.02 16 47 H 0.06 2.61 5.67 -2.39 -0.01 2.60 16 48 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 Total: -1.00 -64.80 336.13 1.38 -63.42 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -0.58 Total: 19.56 kcal Atomic # 6 Polarization: -39.88 SS G_CDS: 4.13 Total: -35.75 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -3.99 Total: -94.78 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.82 Total: 47.56 kcal Total: -64.80 1.38 -63.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577051606.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.687 kcal (2) G-P(sol) polarization free energy of solvation -64.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds