Wall clock time and date at job start Mon Mar 30 2020 19:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.34823 * 2 1 4 4 C 1.53992 * 110.31215 * 237.85834 * 2 1 3 5 5 N 1.47900 * 107.05744 * 242.30732 * 4 2 1 6 6 C 1.48534 * 105.82149 * 334.66806 * 5 4 2 7 7 C 1.54594 * 110.30740 * 122.13707 * 2 1 3 8 8 H 1.08996 * 110.87971 * 22.44952 * 7 2 1 9 9 C 1.52998 * 110.72694 * 259.23131 * 7 2 1 10 10 C 1.53007 * 109.47103 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.46960 * 180.02562 * 10 9 7 12 12 C 1.46902 * 110.99844 * 179.97438 * 11 10 9 13 13 C 1.52994 * 109.46988 * 179.97438 * 12 11 10 14 14 C 1.53010 * 109.47035 * 60.00401 * 13 12 11 15 15 C 1.52998 * 109.47671 * 300.00748 * 13 12 11 16 16 C 1.52996 * 109.47119 * 180.02562 * 13 12 11 17 17 C 1.50702 * 109.47159 * 180.02562 * 16 13 12 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 13 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 13 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48504 * 109.47196 * 60.00645 * 21 19 17 23 23 H 1.48504 * 109.46887 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47679 * 300.00280 * 21 19 17 25 25 H 1.08997 * 109.47077 * 297.85405 * 1 2 3 26 26 H 1.08998 * 109.47039 * 57.86383 * 1 2 3 27 27 H 1.09002 * 109.46591 * 177.85579 * 1 2 3 28 28 H 1.09001 * 109.91781 * 122.95186 * 4 2 1 29 29 H 1.08999 * 109.91217 * 1.66036 * 4 2 1 30 30 H 1.00904 * 111.00310 * 95.18033 * 5 4 2 31 31 H 1.09003 * 110.66733 * 280.77481 * 6 5 4 32 32 H 1.09004 * 110.81052 * 157.70886 * 6 5 4 33 33 H 1.09006 * 109.46819 * 60.04992 * 9 7 2 34 34 H 1.08991 * 109.47288 * 300.04973 * 9 7 2 35 35 H 1.08992 * 109.46843 * 60.00559 * 10 9 7 36 36 H 1.09000 * 109.46777 * 300.00378 * 10 9 7 37 37 H 1.00894 * 110.99685 * 303.95558 * 11 10 9 38 38 H 1.08998 * 109.46869 * 60.00380 * 12 11 10 39 39 H 1.08994 * 109.47040 * 300.00083 * 12 11 10 40 40 H 1.08994 * 109.47333 * 179.97438 * 14 13 12 41 41 H 1.09001 * 109.46866 * 299.99722 * 14 13 12 42 42 H 1.09000 * 109.46676 * 59.99462 * 14 13 12 43 43 H 1.09004 * 109.46610 * 299.99636 * 15 13 12 44 44 H 1.09001 * 109.47486 * 59.99509 * 15 13 12 45 45 H 1.09003 * 109.47277 * 180.02562 * 15 13 12 46 46 H 1.09004 * 109.47066 * 60.00422 * 16 13 12 47 47 H 1.08994 * 109.47405 * 300.00252 * 16 13 12 48 48 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9090 1.0220 0.0000 4 6 2.0646 -0.7683 -1.2228 5 7 2.8314 -1.9235 -0.7081 6 6 3.2856 -1.5347 0.6516 7 6 2.0665 -0.7712 1.2277 8 1 1.3187 -1.4681 1.6059 9 6 2.5052 0.1983 2.3269 10 6 3.0308 -0.5938 3.5258 11 7 3.4514 0.3371 4.5814 12 6 3.9625 -0.3897 5.7513 13 6 4.3903 0.6111 6.8266 14 6 3.1869 1.4611 7.2399 15 6 5.4888 1.5191 6.2702 16 6 4.9231 -0.1458 8.0447 17 6 5.3439 0.8400 9.1041 18 1 5.2411 1.9004 8.9265 19 6 5.8543 0.3881 10.3027 20 7 5.9790 -0.9031 10.5191 21 14 6.3686 1.6098 11.6187 22 1 5.1977 2.4328 12.0150 23 1 6.8813 0.8750 12.8030 24 1 7.4363 2.4929 11.0844 25 1 -0.3633 0.4801 0.9086 26 1 -0.3633 0.5466 -0.8702 27 1 -0.3632 -1.0270 -0.0385 28 1 2.7162 -0.1225 -1.8113 29 1 1.2328 -1.1176 -1.8345 30 1 2.2573 -2.7526 -0.6742 31 1 4.1564 -0.8816 0.5942 32 1 3.5066 -2.4165 1.2530 33 1 1.6542 0.8047 2.6374 34 1 3.2938 0.8470 1.9458 35 1 3.8816 -1.2003 3.2156 36 1 2.2419 -1.2423 3.9068 37 1 4.1363 0.9917 4.2344 38 1 4.8200 -0.9948 5.4570 39 1 3.1799 -1.0367 6.1474 40 1 3.4915 2.1738 8.0062 41 1 2.8078 2.0004 6.3718 42 1 2.4043 0.8142 7.6362 43 1 6.3461 0.9136 5.9758 44 1 5.1097 2.0584 5.4022 45 1 5.7939 2.2318 7.0365 46 1 5.7805 -0.7510 7.7500 47 1 4.1408 -0.7928 8.4413 48 1 6.3384 -1.2210 11.3621 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579453514.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:42:53 Heat of formation + Delta-G solvation = -34.224910 kcal Electronic energy + Delta-G solvation = -20909.800925 eV Core-core repulsion = 17997.853420 eV Total energy + Delta-G solvation = -2911.947505 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 268.221 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.52906 -37.65005 -34.96923 -32.64387 -32.21237 -31.20833 -27.46285 -26.74381 -26.30970 -25.83175 -24.58002 -22.90008 -22.00980 -20.94386 -19.99098 -17.82112 -16.68462 -16.22687 -15.74457 -15.46093 -14.92263 -14.59637 -14.13239 -14.00477 -13.73690 -13.31134 -13.08429 -12.90254 -12.55173 -12.49030 -12.36857 -12.17422 -11.97314 -11.60821 -11.41387 -11.29354 -10.98208 -10.90720 -10.86348 -10.78133 -10.69716 -10.63724 -10.46309 -10.22623 -10.10024 -9.66010 -8.99439 -8.87855 -8.81739 -8.30108 -8.05715 -5.94806 -3.94918 3.35572 3.40124 3.42380 3.92177 4.24790 4.35119 4.49088 4.60363 4.68759 4.89710 5.04587 5.15980 5.18595 5.29010 5.31655 5.38206 5.40881 5.51805 5.59122 5.65341 5.73603 5.75782 5.77836 5.80402 5.81710 5.96304 6.01349 6.13565 6.18480 6.28696 6.36103 6.44597 6.53179 6.68126 6.81067 6.84639 7.03144 7.22812 7.25202 7.27992 7.43213 7.69538 7.73402 7.87636 8.05547 8.50038 9.10270 9.67685 11.16892 Molecular weight = 268.22amu Principal moments of inertia in cm(-1) A = 0.046196 B = 0.002836 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.967265 B = 9872.134458 C =10083.963782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.121 4.121 3 H 0.079 0.921 4 C 0.045 3.955 5 N -0.677 5.677 6 C 0.045 3.955 7 C -0.118 4.118 8 H 0.076 0.924 9 C -0.103 4.103 10 C 0.058 3.942 11 N -0.688 5.688 12 C 0.070 3.930 13 C -0.059 4.059 14 C -0.115 4.115 15 C -0.129 4.129 16 C 0.034 3.966 17 C -0.507 4.507 18 H 0.058 0.942 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.888 3.112 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.278 1.278 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.335 0.665 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.025 0.975 36 H 0.066 0.934 37 H 0.337 0.663 38 H 0.022 0.978 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.042 0.958 42 H 0.038 0.962 43 H 0.040 0.960 44 H 0.033 0.967 45 H 0.064 0.936 46 H 0.012 0.988 47 H 0.014 0.986 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.944 0.438 -21.429 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.141 4.141 3 H 0.097 0.903 4 C -0.085 4.085 5 N -0.303 5.303 6 C -0.084 4.084 7 C -0.138 4.138 8 H 0.094 0.906 9 C -0.141 4.141 10 C -0.072 4.072 11 N -0.320 5.320 12 C -0.058 4.058 13 C -0.059 4.059 14 C -0.173 4.173 15 C -0.186 4.186 16 C -0.004 4.004 17 C -0.546 4.546 18 H 0.076 0.924 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.716 3.284 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.204 1.204 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.150 0.850 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.156 0.844 38 H 0.040 0.960 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.052 0.948 45 H 0.083 0.917 46 H 0.031 0.969 47 H 0.033 0.967 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.872 0.487 -21.417 23.187 hybrid contribution 0.331 0.176 1.099 1.161 sum -8.542 0.663 -20.318 22.050 Atomic orbital electron populations 1.21834 0.94648 1.01574 1.01932 1.22454 0.96152 1.00462 0.94990 0.90296 1.22834 0.96487 0.92689 0.96509 1.62720 1.40057 1.05465 1.22069 1.23227 0.97331 0.99604 0.88231 1.22797 0.98122 0.97761 0.95153 0.90551 1.21502 1.01290 0.97497 0.93840 1.21952 0.99003 0.94772 0.91457 1.60559 1.45765 1.18591 1.07066 1.22094 0.97302 0.95905 0.90523 1.20630 0.95019 0.95012 0.95256 1.21594 0.96733 0.99311 0.99636 1.21767 0.97798 0.99614 0.99416 1.19118 0.95645 0.95018 0.90585 1.21208 1.40847 0.93077 0.99419 0.92350 1.25020 0.96181 0.94969 0.98444 1.69960 1.46321 1.12726 1.24795 0.86722 0.78926 0.81335 0.81387 1.20314 1.21445 1.20359 0.92325 0.92663 0.92920 0.90785 0.91639 0.84964 0.90151 0.90705 0.91099 0.92073 0.95668 0.91538 0.84414 0.95960 0.91711 0.92726 0.93919 0.94245 0.94134 0.94820 0.91732 0.96943 0.96722 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.89 37.16 0.33 -0.65 16 2 C -0.12 -0.92 3.17 -89.26 -0.28 -1.20 16 3 H 0.08 0.63 7.85 -51.93 -0.41 0.23 16 4 C 0.04 0.34 7.18 -2.76 -0.02 0.32 16 5 N -0.68 -5.79 7.51 -110.08 -0.83 -6.61 16 6 C 0.05 0.40 6.17 -1.89 -0.01 0.39 16 7 C -0.12 -0.99 2.63 -88.76 -0.23 -1.23 16 8 H 0.08 0.67 7.87 -51.93 -0.41 0.26 16 9 C -0.10 -1.01 4.86 -26.73 -0.13 -1.14 16 10 C 0.06 0.69 5.53 -3.82 -0.02 0.67 16 11 N -0.69 -9.96 5.71 -113.78 -0.65 -10.61 16 12 C 0.07 1.23 4.65 -3.83 -0.02 1.21 16 13 C -0.06 -1.18 0.60 -154.51 -0.09 -1.28 16 14 C -0.12 -2.26 8.06 37.16 0.30 -1.97 16 15 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 16 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 17 C -0.51 -13.97 7.65 -34.44 -0.26 -14.24 16 18 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 19 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 21 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.43 7.68 -51.93 -0.40 0.03 16 30 H 0.34 2.46 8.92 -39.29 -0.35 2.11 16 31 H 0.08 0.77 8.02 -51.93 -0.42 0.36 16 32 H 0.07 0.65 8.04 -51.93 -0.42 0.23 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 35 H 0.03 0.30 7.42 -51.93 -0.39 -0.09 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.34 4.69 6.77 -39.29 -0.27 4.43 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 41 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 45 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 46 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 363.93 15.07 5.48 5.48 Total: -1.00 -29.08 363.93 -10.04 -39.12 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -9.40 Total: 1.25 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -0.36 Total: -19.02 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -0.74 Total: -43.53 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.08 -10.04 -39.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579453514.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.896 kcal (2) G-P(sol) polarization free energy of solvation -29.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds