Wall clock time and date at job start Mon Mar 30 2020 19:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86795 * 120.00374 * 2 1 4 4 H 1.48500 * 109.47333 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47227 * 299.99894 * 3 2 1 6 6 H 1.48504 * 109.47445 * 59.99726 * 3 2 1 7 7 C 1.40128 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00117 * 180.02562 * 7 2 1 9 9 C 1.46158 * 119.99562 * 0.02562 * 7 2 1 10 10 O 1.21745 * 120.00349 * 0.02562 * 9 7 2 11 11 N 1.34787 * 119.99534 * 179.97438 * 9 7 2 12 12 C 1.39586 * 119.99809 * 185.27350 * 11 9 7 13 13 C 1.39185 * 119.99219 * 213.35701 * 12 11 9 14 14 C 1.38099 * 120.24954 * 180.02562 * 13 12 11 15 15 C 1.38239 * 120.22461 * 359.97438 * 14 13 12 16 16 Cl 1.73604 * 120.00790 * 179.97438 * 15 14 13 17 17 C 1.39802 * 119.98167 * 359.97438 * 15 14 13 18 18 C 1.47659 * 120.12402 * 180.02562 * 17 15 14 19 19 O 1.21481 * 119.99635 * 359.72634 * 18 17 15 20 20 O 1.34723 * 120.00492 * 179.97438 * 18 17 15 21 21 C 1.38709 * 119.99072 * 33.62997 * 12 11 9 22 22 H 0.97004 * 119.99564 * 0.02562 * 1 2 3 23 23 H 0.97001 * 119.99655 * 5.27393 * 11 9 7 24 24 H 1.08001 * 119.87154 * 359.97379 * 13 12 11 25 25 H 1.07997 * 119.88599 * 179.97438 * 14 13 12 26 26 H 0.96698 * 116.99991 * 180.02562 * 20 18 17 27 27 H 1.07997 * 120.11874 * 0.02562 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 3.7004 1.3462 0.0006 5 1 1.8818 2.3964 -1.2125 6 1 1.8817 2.3965 1.2125 7 6 2.0070 -1.2136 0.0005 8 1 3.0869 -1.2136 0.0010 9 6 1.2760 -2.4792 0.0005 10 8 0.0586 -2.4792 -0.0004 11 7 1.9499 -3.6466 0.0005 12 6 1.2563 -4.8528 -0.1106 13 6 1.7280 -5.9891 0.5404 14 6 1.0463 -7.1853 0.4336 15 6 -0.1099 -7.2626 -0.3202 16 17 -0.9620 -8.7694 -0.4510 17 6 -0.5928 -6.1269 -0.9771 18 6 -1.8277 -6.2057 -1.7827 19 8 -2.4235 -7.2600 -1.8796 20 8 -2.2912 -5.1097 -2.4143 21 6 0.1004 -4.9201 -0.8743 22 1 -0.4850 0.8401 -0.0004 23 1 2.9168 -3.6483 0.0778 24 1 2.6309 -5.9352 1.1304 25 1 1.4177 -8.0635 0.9408 26 1 -3.1034 -5.2103 -2.9294 27 1 -0.2644 -4.0406 -1.3839 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608178069.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:43:00 Heat of formation + Delta-G solvation = -127.607321 kcal Electronic energy + Delta-G solvation = -17607.746473 eV Core-core repulsion = 14355.574633 eV Total energy + Delta-G solvation = -3252.171840 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 269.029 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.56629 -40.54189 -38.84973 -37.41680 -37.02097 -35.25365 -34.51795 -32.50553 -30.63177 -28.19133 -25.84094 -24.19108 -22.70171 -21.40713 -19.76275 -18.98851 -18.60829 -17.60055 -17.41795 -16.73654 -16.66116 -16.38161 -15.79083 -15.13011 -14.70579 -14.58695 -14.25751 -14.12878 -13.41623 -13.09631 -12.97766 -12.82880 -12.69789 -12.58074 -12.51440 -12.45688 -11.98492 -11.09974 -11.02581 -10.79875 -10.23897 -9.88727 -8.87283 -8.36725 -6.93759 -0.47479 0.20129 1.11403 1.38734 1.42740 1.45940 1.59976 2.02827 2.21304 2.33248 2.66811 2.83825 3.55609 3.69519 3.97324 4.15824 4.25762 4.45104 4.79600 4.87628 5.07419 5.26412 5.28571 5.44224 5.52480 5.77564 6.15233 6.21063 6.79276 6.94041 7.30215 8.33445 8.56630 Molecular weight = 269.03amu Principal moments of inertia in cm(-1) A = 0.033354 B = 0.004979 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.279295 B = 5621.707840 C = 6339.132359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.030 3.970 3 Si 0.999 3.001 4 H -0.244 1.244 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.560 4.560 8 H 0.097 0.903 9 C 0.527 3.473 10 O -0.604 6.604 11 N -0.687 5.687 12 C 0.157 3.843 13 C -0.105 4.105 14 C -0.085 4.085 15 C -0.027 4.027 16 Cl -0.044 7.044 17 C -0.121 4.121 18 C 0.526 3.474 19 O -0.515 6.515 20 O -0.510 6.510 21 C -0.082 4.082 22 H 0.277 0.723 23 H 0.414 0.586 24 H 0.176 0.824 25 H 0.181 0.819 26 H 0.431 0.569 27 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.823 -10.416 -0.563 11.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.166 1.166 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.596 4.596 8 H 0.115 0.885 9 C 0.334 3.666 10 O -0.489 6.489 11 N -0.332 5.332 12 C 0.059 3.941 13 C -0.126 4.126 14 C -0.103 4.103 15 C -0.056 4.056 16 Cl -0.015 7.015 17 C -0.124 4.124 18 C 0.370 3.630 19 O -0.406 6.406 20 O -0.324 6.324 21 C -0.104 4.104 22 H 0.087 0.913 23 H 0.251 0.749 24 H 0.193 0.807 25 H 0.198 0.802 26 H 0.292 0.708 27 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.940 -10.587 -0.397 11.304 hybrid contribution -0.395 0.765 -0.480 0.985 sum 3.545 -9.822 -0.877 10.479 Atomic orbital electron populations 1.70150 1.09528 1.29300 1.34950 1.26976 0.95514 1.04980 0.91208 0.84940 0.79535 0.75302 0.78407 1.16649 1.19601 1.19539 1.21427 0.95155 0.89332 1.53637 0.88535 1.18770 0.87205 0.83809 0.76793 1.90637 1.15618 1.86995 1.55650 1.43744 1.10561 1.03313 1.75588 1.18197 0.93699 0.87895 0.94352 1.21498 1.02498 0.90363 0.98267 1.21130 0.92063 0.99529 0.97615 1.21004 0.96291 0.86775 1.01500 1.98371 1.76905 1.29323 1.96852 1.18791 0.95927 0.94154 1.03508 1.20756 0.84249 0.80968 0.76982 1.90908 1.58761 1.30135 1.60778 1.84663 1.46975 1.38678 1.62072 1.21374 0.95734 0.96042 0.97234 0.91276 0.74871 0.80668 0.80161 0.70755 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.76 11.82 21.85 0.26 -46.50 15 2 C 0.03 1.55 5.50 85.33 0.47 2.02 15 3 Si 1.00 38.06 29.56 68.60 2.03 40.09 15 4 H -0.24 -8.46 7.11 99.48 0.71 -7.75 15 5 H -0.27 -10.09 7.11 99.48 0.71 -9.39 15 6 H -0.27 -10.04 7.11 99.48 0.71 -9.33 15 7 C -0.56 -29.01 9.54 24.79 0.24 -28.78 15 8 H 0.10 4.37 7.85 -2.91 -0.02 4.35 15 9 C 0.53 28.06 7.47 86.30 0.64 28.70 15 10 O -0.60 -37.44 12.71 -4.49 -0.06 -37.50 15 11 N -0.69 -27.85 5.32 -307.61 -1.64 -29.49 15 12 C 0.16 5.85 6.27 38.25 0.24 6.09 15 13 C -0.11 -2.79 9.95 22.46 0.22 -2.57 15 14 C -0.08 -2.08 9.81 22.24 0.22 -1.86 15 15 C -0.03 -0.85 6.36 22.65 0.14 -0.70 15 16 Cl -0.04 -1.28 26.01 -2.72 -0.07 -1.35 15 17 C -0.12 -4.47 5.87 -20.10 -0.12 -4.59 15 18 C 0.53 18.91 8.26 70.31 0.58 19.49 15 19 O -0.52 -18.81 14.74 19.90 0.29 -18.52 15 20 O -0.51 -16.76 12.68 -56.33 -0.71 -17.47 15 21 C -0.08 -3.43 8.21 22.70 0.19 -3.24 15 22 H 0.28 14.49 8.29 -92.70 -0.77 13.72 15 23 H 0.41 13.37 8.79 -92.71 -0.82 12.56 15 24 H 0.18 3.24 8.06 -2.91 -0.02 3.21 15 25 H 0.18 2.93 8.06 -2.91 -0.02 2.90 15 26 H 0.43 8.99 9.11 -74.06 -0.67 8.31 15 27 H 0.12 6.06 5.98 -2.91 -0.02 6.05 15 Total: -1.00 -74.23 267.54 2.70 -71.53 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: -0.23 Total: 24.64 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: 2.83 Total: 14.57 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -1.38 Total: -75.99 kcal Atomic # 8 Polarization: -73.01 SS G_CDS: -0.48 Total: -73.49 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.09 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.07 Total: -1.35 kcal Total: -74.23 2.70 -71.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608178069.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.080 kcal (2) G-P(sol) polarization free energy of solvation -74.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds