Wall clock time and date at job start Mon Mar 30 2020 19:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99973 * 2 1 4 4 H 1.48496 * 109.46836 * 239.99873 * 3 2 1 5 5 H 1.48498 * 109.46855 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46981 * 120.00147 * 3 2 1 7 7 C 1.37871 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99737 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00324 * 359.97438 * 7 2 1 10 10 S 1.80998 * 109.46987 * 180.02562 * 9 7 2 11 11 C 1.76203 * 100.00060 * 180.02562 * 10 9 7 12 12 N 1.36344 * 120.88306 * 359.97361 * 11 10 9 13 13 H 0.97005 * 119.74168 * 0.02562 * 12 11 10 14 14 C 1.36026 * 120.51438 * 179.97438 * 12 11 10 15 15 N 1.30034 * 122.48662 * 0.02562 * 14 12 11 16 16 C 1.35531 * 121.06431 * 0.02562 * 15 14 12 17 17 N 1.32664 * 133.94042 * 179.97438 * 16 15 14 18 18 C 1.33213 * 110.60075 * 180.02562 * 17 16 15 19 19 Cl 1.73604 * 125.06867 * 180.02562 * 18 17 16 20 20 C 1.36209 * 109.86451 * 359.97438 * 18 17 16 21 21 C 1.39788 * 120.88921 * 180.02562 * 11 10 9 22 22 H 0.97004 * 120.00249 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.46827 * 60.00211 * 9 7 2 24 24 H 1.08998 * 109.47040 * 300.00454 * 9 7 2 25 25 H 1.07997 * 118.74994 * 180.29879 * 14 12 11 26 26 H 1.07999 * 126.82063 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 16 2.4271 -3.8749 -0.0005 11 6 1.3070 -5.2351 -0.0013 12 7 -0.0411 -5.0315 -0.0012 13 1 -0.3912 -4.1268 -0.0010 14 6 -0.8990 -6.0871 -0.0023 15 7 -0.4883 -7.3209 -0.0031 16 6 0.8341 -7.6178 -0.0022 17 7 1.5231 -8.7514 -0.0022 18 6 2.8321 -8.5044 -0.0006 19 17 4.0758 -9.7156 -0.0007 20 6 3.0493 -7.1597 0.0000 21 6 1.7769 -6.5516 -0.0010 22 1 -0.4851 0.8401 -0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6245 -2.5570 0.8896 25 1 -1.9614 -5.8931 -0.0071 26 1 4.0060 -6.6586 0.0016 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001640008939.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:43:07 Heat of formation + Delta-G solvation = 79.718582 kcal Electronic energy + Delta-G solvation = -15003.895976 eV Core-core repulsion = 12235.760084 eV Total energy + Delta-G solvation = -2768.135892 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 269.008 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.54783 -38.77293 -36.13181 -34.29979 -33.68299 -30.81899 -29.31045 -28.50532 -24.69127 -23.84202 -23.22504 -20.56120 -18.48280 -18.19743 -17.34451 -16.73826 -16.01172 -15.54407 -15.00412 -14.08194 -13.85302 -13.56948 -13.24168 -13.12888 -13.01272 -12.79504 -11.67778 -11.32702 -11.21503 -11.06044 -11.03826 -10.94779 -10.26012 -10.17814 -9.91540 -9.10813 -8.92081 -8.81087 -7.96086 -7.21843 -6.69982 -4.79728 0.24493 1.19512 1.29278 2.16049 2.36785 2.91735 3.00416 3.06176 3.08900 3.23408 3.95707 3.96208 3.96397 4.52347 4.69157 4.90236 5.17196 5.53856 6.03091 6.12069 6.15491 6.16998 6.32339 6.69364 6.92767 7.18124 7.35192 7.79680 8.21387 8.29287 8.89402 10.40860 Molecular weight = 269.01amu Principal moments of inertia in cm(-1) A = 0.033051 B = 0.004459 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.966476 B = 6278.142046 C = 7109.965483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.531 4.531 8 H 0.074 0.926 9 C 0.025 3.975 10 S 0.002 5.998 11 C 0.229 3.771 12 N -0.581 5.581 13 H 0.435 0.565 14 C 0.311 3.689 15 N -0.449 5.449 16 C 0.271 3.729 17 N -0.494 5.494 18 C 0.119 3.881 19 Cl -0.039 7.039 20 C -0.184 4.184 21 C -0.214 4.214 22 H 0.274 0.726 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.217 0.783 26 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.208 -5.124 -0.003 5.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.132 4.132 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.570 4.570 8 H 0.092 0.908 9 C -0.122 4.122 10 S 0.249 5.751 11 C -0.009 4.009 12 N -0.194 5.194 13 H 0.277 0.723 14 C 0.019 3.981 15 N -0.164 5.164 16 C 0.014 3.986 17 N -0.212 5.212 18 C -0.038 4.038 19 Cl -0.010 7.010 20 C -0.210 4.210 21 C -0.234 4.234 22 H 0.083 0.917 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.233 0.767 26 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.156 -6.740 -0.004 6.741 hybrid contribution -0.154 2.534 0.002 2.539 sum 0.002 -4.206 -0.003 4.206 Atomic orbital electron populations 1.69861 1.06257 1.28584 1.47379 1.24952 0.95123 0.99687 0.93414 0.86261 0.79453 0.80884 0.79386 1.19516 1.20659 1.19511 1.20378 0.93548 0.87610 1.55470 0.90785 1.21793 0.95616 0.93150 1.01626 1.86745 1.11609 0.93999 1.82717 1.24103 0.86760 1.00697 0.89355 1.43393 1.04797 1.13361 1.57844 0.72263 1.24940 0.96412 0.80882 0.95911 1.67484 1.15947 1.16833 1.16139 1.19213 0.87452 0.89394 1.02567 1.69182 1.02160 1.27047 1.22838 1.20967 0.88586 0.87454 1.06757 1.98313 1.48578 1.56931 1.97215 1.20861 0.95820 0.91895 1.12374 1.19134 0.97803 0.90512 1.15951 0.91655 0.92795 0.92803 0.76675 0.83974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.19 13.29 55.43 0.74 -20.45 15 2 C 0.08 1.74 5.46 -17.82 -0.10 1.65 15 3 Si 0.91 18.26 29.54 -169.99 -5.02 13.24 15 4 H -0.27 -5.38 7.11 56.52 0.40 -4.97 15 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 15 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 7 C -0.53 -12.03 9.13 -34.44 -0.31 -12.35 15 8 H 0.07 1.67 7.71 -52.49 -0.40 1.27 15 9 C 0.03 0.48 4.10 36.01 0.15 0.63 15 10 S 0.00 0.03 21.95 -107.50 -2.36 -2.33 15 11 C 0.23 3.63 7.12 -14.97 -0.11 3.53 15 12 N -0.58 -7.37 5.25 -12.02 -0.06 -7.43 15 13 H 0.43 4.83 6.28 -40.82 -0.26 4.57 15 14 C 0.31 3.65 12.33 -89.86 -1.11 2.55 15 15 N -0.45 -7.38 10.48 -13.30 -0.14 -7.51 15 16 C 0.27 5.24 8.44 -156.84 -1.32 3.92 15 17 N -0.49 -10.26 11.21 -9.73 -0.11 -10.36 15 18 C 0.12 2.25 7.63 -17.68 -0.13 2.12 15 19 Cl -0.04 -0.61 29.29 -51.86 -1.52 -2.13 15 20 C -0.18 -3.30 10.85 -39.26 -0.43 -3.72 15 21 C -0.21 -3.87 6.10 -106.69 -0.65 -4.52 15 22 H 0.27 6.26 8.31 -40.82 -0.34 5.92 15 23 H 0.05 1.03 7.71 -51.92 -0.40 0.63 15 24 H 0.05 1.03 7.71 -51.92 -0.40 0.63 15 25 H 0.22 1.30 8.06 -52.49 -0.42 0.88 15 26 H 0.14 2.27 8.06 -52.49 -0.42 1.84 15 LS Contribution 267.32 15.07 4.03 4.03 Total: -1.00 -28.67 267.32 -9.90 -38.57 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -1.44 Total: 0.60 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -4.01 Total: -6.21 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.42 Total: -45.77 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.02 Total: 13.24 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.36 Total: -2.33 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.52 Total: -2.13 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.67 -9.90 -38.57 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001640008939.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.287 kcal (2) G-P(sol) polarization free energy of solvation -28.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds