Wall clock time and date at job start Mon Mar 30 2020 19:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39457 * 120.20567 * 112.45572 * 3 2 1 5 5 C 1.38233 * 119.94135 * 180.29555 * 4 3 2 6 6 F 1.35098 * 119.82032 * 179.69809 * 5 4 3 7 7 C 1.38735 * 120.35725 * 359.67065 * 5 4 3 8 8 C 1.37983 * 120.41690 * 0.02687 * 7 5 4 9 9 C 1.39255 * 120.04922 * 359.97438 * 8 7 5 10 10 C 1.48098 * 120.17926 * 180.02562 * 9 8 7 11 11 C 1.40105 * 119.99643 * 312.89971 * 10 9 8 12 12 N 1.32170 * 120.28969 * 180.02562 * 11 10 9 13 13 C 1.31884 * 120.29090 * 359.72654 * 12 11 10 14 14 C 1.40856 * 119.97805 * 0.55174 * 13 12 11 15 15 C 1.41331 * 120.14291 * 179.73044 * 14 13 12 16 16 H 1.07997 * 119.99919 * 205.70985 * 15 14 13 17 17 C 1.40051 * 119.99850 * 25.71369 * 15 14 13 18 18 N 1.30723 * 120.00118 * 17.73710 * 17 15 14 19 19 Si 1.86793 * 119.99856 * 197.74271 * 17 15 14 20 20 H 1.48498 * 109.47414 * 265.01661 * 19 17 15 21 21 H 1.48508 * 109.47203 * 25.01401 * 19 17 15 22 22 H 1.48494 * 109.47485 * 145.01329 * 19 17 15 23 23 N 1.32599 * 119.99274 * 132.92411 * 10 9 8 24 24 H 1.08002 * 120.03263 * 359.97438 * 4 3 2 25 25 H 1.07998 * 119.78892 * 180.02562 * 7 5 4 26 26 H 1.08006 * 119.97848 * 179.97438 * 8 7 5 27 27 H 1.08005 * 119.85624 * 0.02562 * 11 10 9 28 28 H 1.08003 * 120.01261 * 180.27997 * 13 12 11 29 29 H 0.97008 * 120.00148 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 0.4613 -1.1138 5 6 4.6518 0.4538 -1.1103 6 9 5.3287 0.8949 -2.1930 7 6 5.3476 -0.0038 -0.0007 8 6 4.6686 -0.4571 1.1116 9 6 3.2761 -0.4571 1.1266 10 6 2.5444 -0.9424 2.3192 11 6 2.9128 -2.1519 2.9229 12 7 2.2635 -2.5907 3.9872 13 6 1.2665 -1.8913 4.4934 14 6 0.8824 -0.6767 3.8924 15 6 -0.1892 0.0728 4.4286 16 1 -0.7530 0.7396 3.7931 17 6 -0.5198 -0.0493 5.7840 18 7 0.3404 -0.5641 6.6229 19 14 -2.1902 0.5236 6.3931 20 1 -2.0795 1.9114 6.9097 21 1 -3.1643 0.4887 5.2727 22 1 -2.6548 -0.3739 7.4811 23 7 1.5403 -0.2324 2.8152 24 1 2.7332 0.8188 -1.9805 25 1 6.4276 -0.0052 -0.0077 26 1 5.2174 -0.8121 1.9714 27 1 3.7311 -2.7281 2.5168 28 1 0.7419 -2.2519 5.3659 29 1 0.1113 -0.6490 7.5617 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242580721.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:41:33 Heat of formation + Delta-G solvation = 40.256723 kcal Electronic energy + Delta-G solvation = -18617.281641 eV Core-core repulsion = 15419.487322 eV Total energy + Delta-G solvation = -3197.794319 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.066 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.94768 -39.77952 -38.52482 -35.91099 -34.31792 -32.94588 -31.60343 -31.37064 -28.84252 -26.31773 -24.27102 -23.55880 -22.11409 -21.35263 -19.08803 -17.88190 -16.67527 -16.22491 -15.93893 -15.79712 -15.64037 -15.34269 -14.94866 -13.99360 -13.76731 -13.47629 -13.41923 -13.00180 -12.86601 -12.46232 -12.03886 -11.86811 -11.77100 -11.43865 -11.33628 -11.24803 -11.02114 -10.52359 -10.03108 -9.92246 -9.46618 -9.11323 -8.72906 -7.87849 -7.48566 -7.16434 -4.82964 0.68239 1.01346 2.27042 2.62718 2.94180 2.97309 3.04036 3.11110 3.13608 3.71982 3.90492 4.01438 4.31954 4.39088 4.67087 4.77055 4.88888 5.20963 5.47601 5.59363 5.75146 5.87812 5.88465 6.04415 6.06232 6.27242 6.45865 6.67820 6.80895 6.84062 7.05060 7.45145 7.93393 8.03005 8.29727 8.33826 8.96933 9.43687 9.82290 Molecular weight = 269.07amu Principal moments of inertia in cm(-1) A = 0.028398 B = 0.005039 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.759436 B = 5555.788679 C = 6117.098285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C 0.259 3.741 3 C 0.026 3.974 4 C -0.111 4.111 5 C 0.089 3.911 6 F -0.138 7.138 7 C -0.126 4.126 8 C -0.077 4.077 9 C 0.030 3.970 10 C 0.110 3.890 11 C -0.078 4.078 12 N -0.442 5.442 13 C 0.022 3.978 14 C 0.228 3.772 15 C -0.417 4.417 16 H 0.092 0.908 17 C 0.076 3.924 18 N -0.780 5.780 19 Si 0.924 3.076 20 H -0.266 1.266 21 H -0.256 1.256 22 H -0.271 1.271 23 N -0.511 5.511 24 H 0.144 0.856 25 H 0.142 0.858 26 H 0.146 0.854 27 H 0.134 0.866 28 H 0.160 0.840 29 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.394 0.995 -7.845 10.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.074 5.074 2 C -0.056 4.056 3 C 0.022 3.978 4 C -0.132 4.132 5 C 0.069 3.931 6 F -0.117 7.117 7 C -0.145 4.145 8 C -0.096 4.096 9 C 0.026 3.974 10 C -0.034 4.034 11 C -0.235 4.235 12 N -0.153 5.153 13 C -0.149 4.149 14 C 0.100 3.900 15 C -0.451 4.451 16 H 0.110 0.890 17 C -0.146 4.146 18 N -0.405 5.405 19 Si 0.747 3.253 20 H -0.191 1.191 21 H -0.180 1.180 22 H -0.195 1.195 23 N -0.229 5.229 24 H 0.162 0.838 25 H 0.160 0.840 26 H 0.164 0.836 27 H 0.151 0.849 28 H 0.177 0.823 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.715 0.938 -7.662 9.605 hybrid contribution -0.005 0.387 0.320 0.502 sum 5.710 1.325 -7.342 9.395 Atomic orbital electron populations 1.81135 1.11868 1.06893 1.07460 1.25090 0.92221 0.94670 0.93669 1.15708 0.85205 1.02481 0.94424 1.20959 0.92435 1.01103 0.98738 1.17386 0.89424 1.01425 0.84834 1.91504 1.79999 1.87311 1.52891 1.21210 1.01106 0.99988 0.92240 1.21053 0.92251 0.98159 0.98171 1.18790 0.92584 0.94585 0.91460 1.20254 0.95224 0.93849 0.94050 1.22620 1.05142 0.97675 0.98014 1.67923 1.06129 1.32708 1.08550 1.23870 0.96258 0.92934 1.01861 1.19291 0.91504 0.91146 0.88054 1.19388 1.10427 1.21350 0.93899 0.89033 1.26044 0.99016 0.93146 0.96413 1.69711 1.33981 1.31691 1.05165 0.86023 0.80741 0.79338 0.79237 1.19088 1.17952 1.19529 1.69042 1.07269 1.31316 1.15284 0.83843 0.83973 0.83622 0.84869 0.82313 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -8.51 18.54 41.84 0.78 -7.73 15 2 C 0.26 4.97 13.50 -22.47 -0.30 4.67 15 3 C 0.03 0.42 5.76 -106.58 -0.61 -0.20 15 4 C -0.11 -1.39 9.72 -39.13 -0.38 -1.77 15 5 C 0.09 1.03 7.29 -39.40 -0.29 0.74 15 6 F -0.14 -1.57 17.26 2.25 0.04 -1.53 15 7 C -0.13 -1.34 10.00 -39.49 -0.39 -1.74 15 8 C -0.08 -1.00 9.42 -39.30 -0.37 -1.37 15 9 C 0.03 0.51 5.66 -104.54 -0.59 -0.08 15 10 C 0.11 2.38 5.87 -82.79 -0.49 1.89 15 11 C -0.08 -1.69 10.63 -16.71 -0.18 -1.86 15 12 N -0.44 -10.77 10.47 -12.03 -0.13 -10.90 15 13 C 0.02 0.58 9.87 -16.54 -0.16 0.41 15 14 C 0.23 6.07 6.40 -84.84 -0.54 5.52 15 15 C -0.42 -10.86 9.28 -37.73 -0.35 -11.21 15 16 H 0.09 2.40 7.91 -52.49 -0.42 1.98 15 17 C 0.08 1.79 5.13 -17.34 -0.09 1.70 15 18 N -0.78 -18.75 11.02 55.55 0.61 -18.14 15 19 Si 0.92 17.74 29.59 -169.99 -5.03 12.71 15 20 H -0.27 -5.03 7.11 56.52 0.40 -4.63 15 21 H -0.26 -4.99 7.11 56.52 0.40 -4.59 15 22 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 23 N -0.51 -12.85 9.15 -7.53 -0.07 -12.92 15 24 H 0.14 1.49 8.06 -52.49 -0.42 1.07 15 25 H 0.14 1.10 8.06 -52.49 -0.42 0.68 15 26 H 0.15 1.66 7.98 -52.48 -0.42 1.24 15 27 H 0.13 2.39 7.98 -52.48 -0.42 1.97 15 28 H 0.16 4.10 6.24 -52.48 -0.33 3.78 15 29 H 0.29 6.23 8.29 -40.82 -0.34 5.89 15 LS Contribution 280.40 15.07 4.23 4.23 Total: -1.00 -28.90 280.40 -5.88 -34.78 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -1.56 Total: 2.81 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -4.75 Total: -3.29 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 1.19 Total: -49.69 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.90 -5.88 -34.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242580721.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.036 kcal (2) G-P(sol) polarization free energy of solvation -28.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds