Wall clock time and date at job start Mon Mar 30 2020 19:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46853 * 2 1 4 4 H 1.09000 * 109.47071 * 174.84423 * 3 2 1 5 5 C 1.50701 * 109.47489 * 54.83997 * 3 2 1 6 6 H 1.07997 * 120.00005 * 240.00065 * 5 3 2 7 7 C 1.37882 * 119.99617 * 59.99979 * 5 3 2 8 8 N 1.31509 * 119.99949 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 119.99908 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47355 * 59.99800 * 9 7 5 11 11 H 1.48502 * 109.47345 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.47210 * 300.00220 * 9 7 5 13 13 N 1.46900 * 109.47187 * 294.84109 * 3 2 1 14 14 C 1.46906 * 110.99888 * 273.82465 * 13 3 2 15 15 C 1.50708 * 109.46839 * 185.21550 * 14 13 3 16 16 C 1.33856 * 122.44593 * 90.02616 * 15 14 13 17 17 S 1.70608 * 110.96341 * 179.97438 * 16 15 14 18 18 C 1.75825 * 91.56419 * 359.97438 * 17 16 15 19 19 C 1.46397 * 125.46352 * 179.97438 * 18 17 16 20 20 O 1.21633 * 120.00033 * 180.02562 * 19 18 17 21 21 O 1.34903 * 119.99925 * 0.02562 * 19 18 17 22 22 C 1.36748 * 109.07571 * 359.75908 * 18 17 16 23 23 H 1.08994 * 109.47654 * 298.00823 * 1 2 3 24 24 H 1.08999 * 109.47171 * 58.00798 * 1 2 3 25 25 H 1.09004 * 109.47053 * 178.00408 * 1 2 3 26 26 H 1.08998 * 109.47280 * 240.00358 * 2 1 3 27 27 H 1.08993 * 109.46985 * 119.99531 * 2 1 3 28 28 H 0.96997 * 120.00066 * 180.02562 * 8 7 5 29 29 H 1.00898 * 111.00348 * 37.77987 * 13 3 2 30 30 H 1.09000 * 109.46813 * 305.20743 * 14 13 3 31 31 H 1.08996 * 109.47195 * 65.21725 * 14 13 3 32 32 H 1.08007 * 124.51605 * 359.97438 * 16 15 14 33 33 H 0.96694 * 116.99636 * 179.97438 * 21 19 18 34 34 H 1.08001 * 123.36228 * 180.24458 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1260 1.4439 0.0923 5 6 1.4360 2.1889 1.1616 6 1 0.8268 3.0628 0.9839 7 6 1.6612 1.7560 2.4512 8 7 2.4034 0.6921 2.6675 9 14 0.9120 2.6807 3.8909 10 1 -0.5677 2.6782 3.7649 11 1 1.3012 2.0177 5.1615 12 1 1.4064 4.0810 3.8911 13 7 1.6546 2.0981 -1.2568 14 6 2.6465 1.8421 -2.3098 15 6 2.2862 2.6316 -3.5419 16 6 2.7354 3.8743 -3.7554 17 16 2.1496 4.4894 -5.2350 18 6 1.2708 3.0018 -5.5608 19 6 0.4524 2.7409 -6.7464 20 8 -0.1149 1.6722 -6.8706 21 8 0.3276 3.6859 -7.7010 22 6 1.4780 2.1257 -4.5315 23 1 -0.3634 0.4825 0.9072 24 1 -0.3633 0.5445 -0.8716 25 1 -0.3633 -1.0271 -0.0358 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 2.5615 0.3874 3.5746 29 1 0.7337 1.8070 -1.5490 30 1 3.6336 2.1446 -1.9603 31 1 2.6558 0.7789 -2.5494 32 1 3.3826 4.4155 -3.0809 33 1 -0.2227 3.4675 -8.4655 34 1 1.0468 1.1361 -4.4979 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604980430.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:40:21 Heat of formation + Delta-G solvation = -63.311800 kcal Electronic energy + Delta-G solvation = -17870.279917 eV Core-core repulsion = 14894.606035 eV Total energy + Delta-G solvation = -2975.673882 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.087 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.20986 -38.41532 -36.30941 -35.98668 -32.56917 -30.97811 -29.68833 -26.89275 -25.52917 -24.48972 -23.19321 -21.17480 -19.34276 -19.21835 -18.39910 -17.57291 -16.33626 -15.80979 -15.78350 -14.84988 -14.77135 -14.31215 -13.61284 -13.41122 -13.08852 -12.93189 -12.56206 -12.41485 -12.14260 -11.79749 -11.72470 -11.39426 -11.07557 -10.89644 -10.82380 -10.64552 -10.53233 -9.99418 -9.83320 -9.56857 -9.03003 -8.91152 -8.42810 -8.34747 -7.25580 -5.97970 -3.99646 0.36460 1.45158 1.89937 2.21454 2.84085 2.90974 3.34042 3.38517 3.41823 4.44519 5.03170 5.12841 5.19074 5.33681 5.40768 5.55987 5.76543 5.97302 6.08165 6.23156 6.33428 6.36287 6.38106 6.52729 6.58741 6.89643 7.24519 7.26086 7.49352 7.68770 7.69278 7.87776 8.26301 8.50756 8.59432 9.05629 9.64043 11.08981 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.029965 B = 0.004098 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.191052 B = 6830.961765 C = 7193.416580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.146 4.146 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.679 5.679 14 C 0.114 3.886 15 C -0.108 4.108 16 C -0.199 4.199 17 S 0.226 5.774 18 C -0.280 4.280 19 C 0.561 3.439 20 O -0.511 6.511 21 O -0.515 6.515 22 C -0.024 4.024 23 H 0.065 0.935 24 H 0.030 0.970 25 H 0.022 0.978 26 H 0.011 0.989 27 H 0.093 0.907 28 H 0.260 0.740 29 H 0.328 0.672 30 H 0.076 0.924 31 H 0.031 0.969 32 H 0.174 0.826 33 H 0.415 0.585 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.201 5.292 -16.798 17.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.186 4.186 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.311 5.311 14 C -0.018 4.018 15 C -0.120 4.120 16 C -0.337 4.337 17 S 0.495 5.505 18 C -0.398 4.398 19 C 0.405 3.595 20 O -0.401 6.401 21 O -0.327 6.327 22 C -0.059 4.059 23 H 0.084 0.916 24 H 0.049 0.951 25 H 0.042 0.958 26 H 0.030 0.970 27 H 0.111 0.889 28 H 0.069 0.931 29 H 0.147 0.853 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.192 0.808 33 H 0.274 0.726 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.438 7.020 -16.928 18.331 hybrid contribution -1.099 -2.046 1.019 2.536 sum -0.661 4.974 -15.908 16.681 Atomic orbital electron populations 1.21568 0.97650 0.98032 1.01311 1.22115 0.95057 1.01069 1.00320 1.19236 0.96006 0.88646 0.85334 0.94864 1.21018 1.30615 1.11520 0.89613 0.92094 1.24904 0.95539 0.95167 0.98708 1.69865 1.38969 1.23980 1.20815 0.86630 0.79578 0.79965 0.81620 1.20393 1.21519 1.20365 1.60889 1.03689 1.63233 1.03244 1.20608 0.97724 0.95156 0.88269 1.18889 0.99801 0.95367 0.97966 1.25429 1.06314 0.99781 1.02195 1.83010 1.40568 1.13663 1.13215 1.23260 1.13594 1.02363 1.00597 1.19359 0.77844 0.80974 0.81300 1.90949 1.45613 1.25563 1.77970 1.84598 1.68694 1.46235 1.33173 1.20751 0.94880 0.99912 0.90380 0.91571 0.95113 0.95845 0.97032 0.88850 0.93055 0.85330 0.90512 0.95101 0.80843 0.72629 0.83015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.39 37.16 0.35 -2.37 16 2 C -0.15 -3.35 5.51 -26.73 -0.15 -3.50 16 3 C 0.22 5.16 2.33 -68.86 -0.16 4.99 16 4 H 0.03 0.88 7.70 -51.93 -0.40 0.48 16 5 C -0.49 -12.96 7.38 -34.44 -0.25 -13.22 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.54 5.26 -17.82 -0.09 1.45 16 8 N -0.90 -24.92 11.38 55.43 0.63 -24.29 16 9 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 13 N -0.68 -13.81 6.20 -109.21 -0.68 -14.49 16 14 C 0.11 1.94 5.76 -4.97 -0.03 1.91 16 15 C -0.11 -1.58 5.34 -106.46 -0.57 -2.15 16 16 C -0.20 -2.55 10.67 29.19 0.31 -2.23 16 17 S 0.23 2.50 22.92 -107.50 -2.46 0.03 16 18 C -0.28 -3.68 6.45 -36.84 -0.24 -3.92 16 19 C 0.56 7.16 8.30 34.01 0.28 7.44 16 20 O -0.51 -7.89 17.63 -19.37 -0.34 -8.23 16 21 O -0.51 -4.71 13.29 -41.05 -0.55 -5.26 16 22 C -0.02 -0.34 9.79 -40.42 -0.40 -0.74 16 23 H 0.07 1.54 7.12 -51.93 -0.37 1.17 16 24 H 0.03 0.59 6.36 -51.93 -0.33 0.26 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.01 0.24 7.52 -51.93 -0.39 -0.16 16 27 H 0.09 2.41 6.23 -51.93 -0.32 2.09 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.33 6.54 6.57 -39.29 -0.26 6.28 16 30 H 0.08 1.31 7.90 -51.93 -0.41 0.90 16 31 H 0.03 0.52 7.54 -51.93 -0.39 0.13 16 32 H 0.17 2.03 8.06 -52.48 -0.42 1.60 16 33 H 0.42 1.77 9.11 45.56 0.42 2.19 16 34 H 0.15 2.12 8.06 -52.49 -0.42 1.69 16 LS Contribution 304.90 15.07 4.59 4.59 Total: -1.00 -30.00 304.90 -8.04 -38.04 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -3.27 Total: 5.83 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -0.94 Total: -12.33 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: -0.05 Total: -38.78 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.89 Total: -13.49 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.46 Total: 0.03 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.00 -8.04 -38.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604980430.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.272 kcal (2) G-P(sol) polarization free energy of solvation -30.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds