Wall clock time and date at job start Mon Mar 30 2020 19:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 120.00172 * 2 1 4 4 H 1.48498 * 109.47116 * 269.99812 * 3 2 1 5 5 H 1.48498 * 109.47361 * 29.99905 * 3 2 1 6 6 H 1.48499 * 109.47392 * 149.99885 * 3 2 1 7 7 C 1.38819 * 119.99564 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00397 * 0.02562 * 7 2 1 9 9 N 1.36933 * 119.99685 * 179.97438 * 7 2 1 10 10 C 1.46495 * 120.00288 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47716 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47535 * 179.97438 * 11 10 9 13 13 N 1.46494 * 109.47001 * 180.02562 * 12 11 10 14 14 C 1.34784 * 119.99635 * 180.02562 * 13 12 11 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99961 * 180.02562 * 14 13 12 17 17 C 1.50697 * 109.47266 * 180.02562 * 16 14 13 18 18 C 1.33630 * 126.03963 * 89.99962 * 17 16 14 19 19 N 1.31783 * 114.50354 * 180.02562 * 18 17 16 20 20 C 1.29025 * 117.12171 * 359.97438 * 19 18 17 21 21 S 1.70976 * 110.16656 * 359.72929 * 20 19 18 22 22 H 0.97003 * 120.00208 * 0.02562 * 1 2 3 23 23 H 0.97003 * 119.99793 * 0.02562 * 9 7 2 24 24 H 1.09005 * 109.46784 * 60.00109 * 10 9 7 25 25 H 1.09004 * 109.47419 * 300.00466 * 10 9 7 26 26 H 1.09005 * 109.46889 * 60.00193 * 11 10 9 27 27 H 1.08996 * 109.47223 * 300.00972 * 11 10 9 28 28 H 1.09005 * 109.46767 * 60.00250 * 12 11 10 29 29 H 1.09002 * 109.47113 * 300.00590 * 12 11 10 30 30 H 0.96995 * 120.00292 * 0.27801 * 13 12 11 31 31 H 1.09004 * 109.46932 * 300.00223 * 16 14 13 32 32 H 1.08997 * 109.47392 * 59.99562 * 16 14 13 33 33 H 1.08005 * 122.74961 * 359.97438 * 18 17 16 34 34 H 1.08003 * 124.92050 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2023 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3795 -1.2023 0.0000 10 6 4.1120 -2.4709 0.0011 11 6 5.6163 -2.1915 -0.0004 12 6 6.3813 -3.5165 0.0014 13 7 7.8215 -3.2488 0.0006 14 6 8.6974 -4.2733 0.0014 15 8 8.2930 -5.4167 0.0033 16 6 10.1790 -3.9980 0.0011 17 6 10.9325 -5.3031 0.0015 18 6 11.3254 -5.9844 -1.0788 19 7 11.9706 -7.1028 -0.8149 20 6 12.1441 -7.4025 0.4280 21 16 11.4578 -6.1963 1.4266 22 1 -0.4850 0.8401 -0.0004 23 1 3.8645 -0.3622 -0.0004 24 1 3.8484 -3.0435 -0.8882 25 1 3.8490 -3.0416 0.8918 26 1 5.8803 -1.6187 0.8887 27 1 5.8789 -1.6210 -0.8912 28 1 6.1173 -4.0896 -0.8874 29 1 6.1185 -4.0866 0.8926 30 1 8.1449 -2.3343 0.0031 31 1 10.4423 -3.4271 -0.8894 32 1 10.4424 -3.4257 0.8905 33 1 11.1296 -5.6466 -2.0858 34 1 12.6537 -8.2849 0.7858 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160486708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:41:44 Heat of formation + Delta-G solvation = 16.626248 kcal Electronic energy + Delta-G solvation = -16986.780225 eV Core-core repulsion = 14046.865468 eV Total energy + Delta-G solvation = -2939.914757 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.26286 -39.43866 -36.26804 -34.53370 -33.22273 -31.99721 -30.17000 -28.14273 -25.69140 -24.54190 -22.30524 -21.40025 -20.81688 -20.21777 -18.42521 -17.69854 -17.12059 -16.42286 -15.97925 -15.50391 -14.75043 -14.70025 -14.44014 -14.20914 -13.92925 -13.48746 -13.33389 -12.99303 -12.82986 -12.38934 -12.05632 -11.55202 -11.24600 -11.07881 -10.88780 -10.75170 -10.23119 -10.14135 -9.96212 -9.62808 -9.53959 -9.23027 -9.20136 -8.93574 -7.27914 -5.79649 -3.16050 0.37762 1.04686 1.43295 2.40951 2.51739 3.05334 3.33463 3.35752 3.42017 4.00627 4.28969 4.55617 4.60533 4.63880 4.89775 4.93017 5.00241 5.14709 5.35579 5.44479 5.50584 5.73877 5.82926 5.87324 5.90526 6.08657 6.28258 6.64213 6.67232 7.28244 7.39198 7.96255 8.00669 8.39046 9.17582 9.89572 10.08890 11.38685 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.058379 B = 0.002581 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.506138 B =10846.958510 C =10996.136023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.160 3.840 11 C -0.141 4.141 12 C 0.122 3.878 13 N -0.727 5.727 14 C 0.510 3.490 15 O -0.530 6.530 16 C -0.065 4.065 17 C -0.200 4.200 18 C 0.044 3.956 19 N -0.470 5.470 20 C 0.015 3.985 21 S 0.134 5.866 22 H 0.260 0.740 23 H 0.361 0.639 24 H 0.030 0.970 25 H 0.030 0.970 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.401 0.599 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.174 0.826 34 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.983 -8.575 1.974 29.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.193 4.193 3 Si 0.718 3.282 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.403 5.403 10 C 0.032 3.968 11 C -0.180 4.180 12 C -0.001 4.001 13 N -0.379 5.379 14 C 0.294 3.706 15 O -0.405 6.405 16 C -0.107 4.107 17 C -0.321 4.321 18 C -0.107 4.107 19 N -0.184 5.184 20 C -0.282 4.282 21 S 0.387 5.613 22 H 0.070 0.930 23 H 0.193 0.807 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.235 0.765 31 H 0.135 0.865 32 H 0.126 0.874 33 H 0.191 0.809 34 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 27.595 -9.777 2.648 29.395 hybrid contribution 0.447 1.909 -0.841 2.134 sum 28.042 -7.867 1.806 29.180 Atomic orbital electron populations 1.69705 1.05108 1.25871 1.57439 1.24702 0.95286 0.97291 1.02004 0.86504 0.79125 0.84872 0.77734 1.21065 1.21686 1.20402 1.19070 0.80557 0.94841 1.43147 0.89145 1.42682 1.04131 1.02132 1.91316 1.20497 0.87624 0.89539 0.99103 1.21995 0.97208 0.96171 1.02601 1.21358 0.78036 0.97940 1.02786 1.46043 1.07192 1.09237 1.75462 1.20410 0.87975 0.85458 0.76735 1.90753 1.80027 1.21235 1.48531 1.20053 0.91157 0.93469 1.06055 1.25285 1.08253 1.02987 0.95600 1.21698 0.98365 0.90584 1.00090 1.66307 1.16052 1.16770 1.19229 1.28359 1.04367 1.04160 0.91335 1.83998 1.49648 1.16333 1.11341 0.93008 0.80693 0.95162 0.95224 0.91330 0.91287 0.91093 0.91152 0.76485 0.86547 0.87429 0.80893 0.78473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.36 13.97 55.49 0.78 -28.58 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.89 21.80 27.73 -169.99 -4.71 17.09 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.33 6.52 56.52 0.37 -5.97 16 7 C -0.25 -7.00 10.47 -15.06 -0.16 -7.16 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 9 N -0.76 -17.78 5.41 -59.91 -0.32 -18.10 16 10 C 0.16 2.97 6.26 -4.05 -0.03 2.95 16 11 C -0.14 -1.90 5.44 -26.73 -0.15 -2.04 16 12 C 0.12 1.48 5.67 -4.04 -0.02 1.46 16 13 N -0.73 -6.93 5.56 -60.29 -0.33 -7.27 16 14 C 0.51 5.45 7.82 -10.98 -0.09 5.37 16 15 O -0.53 -8.11 16.03 5.56 0.09 -8.02 16 16 C -0.06 -0.44 6.24 -29.04 -0.18 -0.63 16 17 C -0.20 -1.81 5.09 -35.92 -0.18 -1.99 16 18 C 0.04 0.44 11.25 -19.19 -0.22 0.22 16 19 N -0.47 -5.12 10.54 -15.75 -0.17 -5.28 16 20 C 0.02 0.13 12.23 51.58 0.63 0.76 16 21 S 0.13 1.09 23.22 -107.50 -2.50 -1.41 16 22 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 23 H 0.36 8.11 5.53 -40.82 -0.23 7.89 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.40 2.61 8.47 -40.82 -0.35 2.27 16 31 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.17 1.42 8.06 -52.48 -0.42 1.00 16 34 H 0.20 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 310.80 15.07 4.68 4.68 Total: -1.00 -36.09 310.80 -7.36 -43.45 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -4.39 Total: 4.51 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -0.48 Total: -1.07 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -0.05 Total: -59.23 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.09 Total: -8.02 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.09 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.50 Total: -1.41 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -36.09 -7.36 -43.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160486708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.081 kcal (2) G-P(sol) polarization free energy of solvation -36.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds