Wall clock time and date at job start Mon Mar 30 2020 19:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46493 * 109.47045 * 2 1 4 4 C 1.37102 * 119.99816 * 264.76152 * 3 2 1 5 5 H 1.07999 * 119.99546 * 138.85282 * 4 3 2 6 6 C 1.38943 * 120.00111 * 318.85927 * 4 3 2 7 7 N 1.31409 * 120.00026 * 341.82659 * 6 4 3 8 8 Si 1.86806 * 120.00051 * 161.82105 * 6 4 3 9 9 H 1.48500 * 109.46979 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.47214 * 119.99949 * 8 6 4 11 11 H 1.48503 * 109.47218 * 240.00226 * 8 6 4 12 12 C 1.34777 * 120.00546 * 84.76696 * 3 2 1 13 13 O 1.21288 * 120.00116 * 179.97438 * 12 3 2 14 14 C 1.50704 * 119.99614 * 0.02562 * 12 3 2 15 15 C 1.50703 * 109.47117 * 180.02562 * 14 12 3 16 16 C 1.38412 * 120.02559 * 89.99252 * 15 14 12 17 17 F 1.35100 * 120.01447 * 359.70599 * 16 15 14 18 18 C 1.38480 * 119.97438 * 179.97438 * 16 15 14 19 19 C 1.38203 * 120.02313 * 0.02562 * 18 16 15 20 20 C 1.38215 * 120.05398 * 359.97438 * 19 18 16 21 21 C 1.38420 * 120.01965 * 269.97694 * 15 14 12 22 22 F 1.35101 * 120.01659 * 359.97438 * 21 15 14 23 23 H 1.08991 * 109.47112 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46858 * 300.00661 * 1 2 3 25 25 H 1.09002 * 109.46349 * 60.00009 * 1 2 3 26 26 H 1.08994 * 109.46792 * 239.99546 * 2 1 3 27 27 H 1.09002 * 109.46349 * 119.99991 * 2 1 3 28 28 H 0.97006 * 119.99598 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.47137 * 59.99913 * 14 12 3 30 30 H 1.09001 * 109.46898 * 299.99568 * 14 12 3 31 31 H 1.07995 * 119.98695 * 180.02562 * 18 16 15 32 32 H 1.08003 * 119.97509 * 180.02562 * 19 18 16 33 33 H 1.07999 * 119.98791 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3491 1.9913 -1.1824 5 1 2.0745 3.0217 -1.3536 6 6 3.0373 1.2840 -2.1604 7 7 3.6792 0.1816 -1.8450 8 14 3.0501 1.9001 -3.9239 9 1 2.2586 3.1533 -4.0162 10 1 4.4488 2.1666 -4.3451 11 1 2.4532 0.8706 -4.8123 12 6 2.1427 2.0521 1.1623 13 8 2.5474 3.1955 1.1622 14 6 1.7798 1.3812 2.4621 15 6 2.0071 2.3396 3.6026 16 6 0.9861 3.1771 4.0174 17 9 -0.2129 3.1400 3.3961 18 6 1.1959 4.0570 5.0660 19 6 2.4243 4.0994 5.6978 20 6 3.4446 3.2636 5.2845 21 6 3.2369 2.3827 4.2364 22 9 4.2341 1.5653 3.8331 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 4.1600 -0.3119 -2.5278 29 1 2.4019 0.4970 2.6006 30 1 0.7305 1.0872 2.4386 31 1 0.3993 4.7102 5.3900 32 1 2.5869 4.7857 6.5158 33 1 4.4042 3.2980 5.7787 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087189708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:41:24 Heat of formation + Delta-G solvation = -118.147932 kcal Electronic energy + Delta-G solvation = -20786.532222 eV Core-core repulsion = 17254.640080 eV Total energy + Delta-G solvation = -3531.892142 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.01857 -50.00947 -40.70722 -39.49142 -36.94026 -34.36838 -33.57450 -31.22959 -31.19953 -29.12915 -26.63774 -24.09356 -23.82293 -23.21308 -20.76779 -19.11250 -18.80892 -18.37357 -17.94663 -17.14092 -16.81570 -16.68657 -16.58421 -16.29620 -15.89699 -15.74551 -15.41508 -14.64846 -14.60101 -14.29080 -13.86457 -13.70971 -13.60268 -13.16995 -12.91208 -12.89236 -12.69860 -12.62654 -12.37318 -12.21119 -12.08607 -11.83480 -10.93129 -10.53947 -9.80842 -9.71001 -9.44657 -8.37083 -6.14653 0.02051 0.02265 1.34563 1.38595 1.53033 1.98749 2.25506 2.39742 2.96093 2.97139 3.08490 3.46363 3.48250 3.69584 3.91702 4.05138 4.21423 4.28511 4.36874 4.46771 4.59097 4.77633 4.87330 4.92870 5.00259 5.07984 5.09029 5.20990 5.24863 5.42085 5.50020 5.83282 6.20218 6.50880 7.13997 7.40247 8.01776 8.67168 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.025713 B = 0.005865 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.679300 B = 4773.327224 C = 5027.525096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.100 3.900 3 N -0.453 5.453 4 C -0.343 4.343 5 H 0.060 0.940 6 C 0.003 3.997 7 N -0.892 5.892 8 Si 0.985 3.015 9 H -0.271 1.271 10 H -0.278 1.278 11 H -0.260 1.260 12 C 0.454 3.546 13 O -0.622 6.622 14 C -0.089 4.089 15 C -0.150 4.150 16 C 0.111 3.889 17 F -0.142 7.142 18 C -0.157 4.157 19 C -0.053 4.053 20 C -0.158 4.158 21 C 0.107 3.893 22 F -0.146 7.146 23 H 0.088 0.912 24 H 0.051 0.949 25 H 0.043 0.957 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.274 0.726 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.172 0.828 32 H 0.192 0.808 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.027 1.143 14.228 15.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.023 4.023 3 N -0.172 5.172 4 C -0.471 4.471 5 H 0.078 0.922 6 C -0.199 4.199 7 N -0.530 5.530 8 Si 0.808 3.192 9 H -0.196 1.196 10 H -0.204 1.204 11 H -0.185 1.185 12 C 0.244 3.756 13 O -0.508 6.508 14 C -0.129 4.129 15 C -0.153 4.153 16 C 0.092 3.908 17 F -0.121 7.121 18 C -0.175 4.175 19 C -0.070 4.070 20 C -0.177 4.177 21 C 0.087 3.913 22 F -0.125 7.125 23 H 0.107 0.893 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.190 0.810 32 H 0.209 0.791 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -4.735 1.476 14.061 14.910 hybrid contribution 0.244 -0.202 -1.487 1.521 sum -4.491 1.275 12.574 13.412 Atomic orbital electron populations 1.22119 0.95077 1.02714 1.01320 1.21599 0.94171 0.83451 1.03111 1.43728 1.56070 1.13017 1.04393 1.19376 1.36779 0.98168 0.92756 0.92234 1.26212 0.92957 0.96578 1.04159 1.70007 1.29381 1.18221 1.35343 0.85028 0.78118 0.78713 0.77360 1.19568 1.20371 1.18498 1.20946 0.81197 0.87591 0.85913 1.90465 1.51947 1.20735 1.87673 1.20460 1.04721 0.97915 0.89819 1.19591 0.94331 1.01948 0.99383 1.17546 0.80545 0.98042 0.94675 1.91463 1.42966 1.95515 1.82117 1.21575 1.01118 0.99261 0.95549 1.21347 0.89772 0.96794 0.99106 1.21572 1.03174 0.96289 0.96652 1.17652 0.83917 0.92901 0.96799 1.91473 1.59598 1.71042 1.90347 0.89301 0.93010 0.93741 0.89938 0.91847 0.91638 0.87963 0.87017 0.81040 0.79102 0.81364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.54 10.15 71.99 0.73 -4.81 16 2 C 0.10 4.48 5.41 86.38 0.47 4.94 16 3 N -0.45 -24.54 2.50 -635.54 -1.59 -26.13 16 4 C -0.34 -20.32 8.84 84.04 0.74 -19.57 16 5 H 0.06 3.77 7.82 -2.91 -0.02 3.75 16 6 C 0.00 0.19 4.95 84.93 0.42 0.61 16 7 N -0.89 -49.87 11.61 21.66 0.25 -49.61 16 8 Si 0.98 43.64 29.59 68.60 2.03 45.67 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 12 C 0.45 24.18 7.59 87.66 0.66 24.84 16 13 O -0.62 -38.00 15.95 -3.05 -0.05 -38.05 16 14 C -0.09 -3.66 4.08 29.10 0.12 -3.54 16 15 C -0.15 -5.62 4.38 -19.78 -0.09 -5.71 16 16 C 0.11 3.66 7.24 22.37 0.16 3.82 16 17 F -0.14 -4.97 16.48 44.97 0.74 -4.23 16 18 C -0.16 -3.61 10.03 22.32 0.22 -3.39 16 19 C -0.05 -0.98 10.04 22.26 0.22 -0.76 16 20 C -0.16 -3.83 10.03 22.32 0.22 -3.60 16 21 C 0.11 3.67 7.24 22.37 0.16 3.84 16 22 F -0.15 -5.61 16.48 44.97 0.74 -4.87 16 23 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 24 H 0.05 1.76 6.60 -2.39 -0.02 1.74 16 25 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.08 4.07 5.76 -2.39 -0.01 4.05 16 27 H 0.06 2.58 6.66 -2.39 -0.02 2.57 16 28 H 0.27 14.18 8.31 -92.70 -0.77 13.41 16 29 H 0.10 3.98 6.91 -2.39 -0.02 3.96 16 30 H 0.11 4.06 6.04 -2.39 -0.01 4.04 16 31 H 0.17 2.76 8.06 -2.91 -0.02 2.73 16 32 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -75.62 292.45 7.32 -68.31 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 1.14 Total: 12.25 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 4.05 Total: -3.34 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -1.34 Total: -75.74 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -0.05 Total: -38.05 kcal Atomic # 9 Polarization: -10.59 SS G_CDS: 1.48 Total: -9.10 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -75.62 7.32 -68.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087189708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.842 kcal (2) G-P(sol) polarization free energy of solvation -75.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds