Wall clock time and date at job start Mon Mar 30 2020 19:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99939 * 2 1 4 4 H 1.48498 * 109.47103 * 269.99873 * 3 2 1 5 5 H 1.48500 * 109.47292 * 30.00127 * 3 2 1 6 6 H 1.48503 * 109.47430 * 149.99773 * 3 2 1 7 7 C 1.38820 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99653 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99477 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99696 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.85141 * 23.79607 * 10 9 7 12 12 C 1.53783 * 113.61569 * 154.99663 * 10 9 7 13 13 C 1.53778 * 87.08056 * 89.19952 * 12 10 9 14 14 H 1.09006 * 113.61314 * 270.79920 * 13 12 10 15 15 N 1.46501 * 113.61198 * 139.98391 * 13 12 10 16 16 C 1.34780 * 119.99874 * 155.00011 * 15 13 12 17 17 O 1.21278 * 119.99868 * 359.97438 * 16 15 13 18 18 C 1.50694 * 119.99860 * 179.97438 * 16 15 13 19 19 H 1.08998 * 110.51083 * 321.28879 * 18 16 15 20 20 C 1.54097 * 110.68845 * 84.11651 * 18 16 15 21 21 O 1.45707 * 104.00726 * 118.63517 * 20 18 16 22 22 C 1.33774 * 109.47549 * 359.97438 * 21 20 18 23 23 O 1.21506 * 123.06746 * 180.02562 * 22 21 20 24 24 N 1.34000 * 113.85818 * 0.02562 * 22 21 20 25 25 C 1.53775 * 87.08266 * 25.43343 * 13 12 10 26 26 H 0.96991 * 120.00470 * 359.97438 * 1 2 3 27 27 H 0.96995 * 120.00771 * 359.97438 * 9 7 2 28 28 H 1.09000 * 113.60905 * 334.64949 * 12 10 9 29 29 H 1.09001 * 113.68893 * 203.75801 * 12 10 9 30 30 H 0.96995 * 120.00339 * 334.99341 * 15 13 12 31 31 H 1.09002 * 110.52144 * 0.02562 * 20 18 16 32 32 H 1.09003 * 110.51661 * 237.25971 * 20 18 16 33 33 H 0.97004 * 125.55743 * 179.97438 * 24 22 21 34 34 H 1.08996 * 113.62020 * 89.11829 * 25 13 12 35 35 H 1.09011 * 113.61243 * 220.02044 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0657 -3.5638 0.4058 12 6 1.2603 -4.8288 0.5961 13 6 0.7222 -5.0805 -0.8223 14 1 -0.1894 -4.5272 -1.0481 15 7 0.6268 -6.5004 -1.1703 16 6 -0.2513 -6.9067 -2.1087 17 8 -0.9627 -6.0970 -2.6645 18 6 -0.3490 -8.3672 -2.4670 19 1 0.6402 -8.8248 -2.4779 20 6 -1.2771 -9.1078 -1.4849 21 8 -2.3533 -9.6114 -2.3283 22 6 -2.1324 -9.2490 -3.5970 23 8 -2.8804 -9.5399 -4.5093 24 7 -1.0111 -8.5361 -3.7697 25 6 2.0010 -4.4033 -1.3427 26 1 -0.4850 0.8399 0.0004 27 1 0.3557 -2.3881 0.0005 28 1 0.4930 -4.5188 1.3055 29 1 1.8860 -5.6367 0.9755 30 1 1.1956 -7.1481 -0.7256 31 1 -1.6691 -8.4191 -0.7364 32 1 -0.7481 -9.9326 -1.0075 33 1 -0.6884 -8.1882 -4.6157 34 1 2.8304 -5.0941 -1.4940 35 1 1.8316 -3.7497 -2.1986 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020120121.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:43:24 Heat of formation + Delta-G solvation = -66.231798 kcal Electronic energy + Delta-G solvation = -20202.589328 eV Core-core repulsion = 16816.328706 eV Total energy + Delta-G solvation = -3386.260622 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.08390 -39.89206 -38.19883 -37.34494 -34.95996 -34.27052 -32.84809 -30.38412 -29.56617 -25.58341 -25.25168 -24.10616 -22.75282 -22.70082 -20.92188 -19.12697 -18.48340 -18.06514 -17.48105 -17.20948 -16.42323 -15.96323 -15.15876 -15.06414 -14.79186 -14.60327 -14.24702 -14.08213 -13.81085 -13.26188 -12.92461 -12.74959 -12.23036 -12.11887 -11.77866 -11.22395 -10.99449 -10.93255 -10.88164 -10.52359 -10.40492 -10.24253 -9.96694 -9.78288 -9.47757 -9.02662 -8.92659 -7.08735 -5.85613 -3.16431 2.14405 2.24919 2.45059 2.83825 3.27204 3.39031 3.43929 3.46036 3.65640 4.16742 4.21113 4.50223 4.61075 4.78388 4.91470 4.99088 5.09554 5.25810 5.37665 5.76690 5.86080 5.94349 6.01654 6.21515 6.40723 6.45009 6.57689 6.63191 6.86093 6.89446 7.32290 7.63013 7.76443 7.98316 8.32189 9.43201 9.98273 10.31854 11.36395 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.040128 B = 0.003370 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.604067 B = 8306.002922 C = 8607.897404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.249 4.249 8 H 0.073 0.927 9 N -0.705 5.705 10 C 0.172 3.828 11 H 0.070 0.930 12 C -0.164 4.164 13 C 0.123 3.877 14 H 0.115 0.885 15 N -0.709 5.709 16 C 0.496 3.504 17 O -0.514 6.514 18 C 0.075 3.925 19 H 0.126 0.874 20 C 0.055 3.945 21 O -0.323 6.323 22 C 0.652 3.348 23 O -0.519 6.519 24 N -0.710 5.710 25 C -0.184 4.184 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.398 0.602 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.441 0.559 34 H 0.070 0.930 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.266 -20.199 -0.106 20.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.380 4.380 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.058 3.942 11 H 0.088 0.912 12 C -0.204 4.204 13 C 0.019 3.981 14 H 0.133 0.867 15 N -0.360 5.360 16 C 0.278 3.722 17 O -0.388 6.388 18 C -0.036 4.036 19 H 0.143 0.857 20 C -0.020 4.020 21 O -0.233 6.233 22 C 0.404 3.596 23 O -0.403 6.403 24 N -0.383 5.383 25 C -0.227 4.227 26 H 0.067 0.933 27 H 0.220 0.780 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.233 0.767 31 H 0.130 0.870 32 H 0.138 0.862 33 H 0.285 0.715 34 H 0.089 0.911 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.172 -19.761 -0.718 20.027 hybrid contribution 0.779 0.882 -0.175 1.189 sum 3.951 -18.879 -0.893 19.309 Atomic orbital electron populations 1.69657 1.05186 1.25998 1.56804 1.24794 0.95532 0.97900 1.02384 0.86162 0.78634 0.83586 0.77594 1.21594 1.21692 1.20649 1.19258 0.91110 0.83857 1.43769 0.90886 1.42198 1.05763 0.99412 1.86981 1.20898 0.95362 0.85437 0.92465 0.91244 1.23913 1.00820 1.00067 0.95560 1.22765 1.00088 0.78851 0.96348 0.86711 1.46135 1.39414 1.10439 1.40009 1.20526 0.81070 0.89712 0.80899 1.90824 1.42341 1.54315 1.51331 1.22362 1.00119 0.95502 0.85580 0.85664 1.24262 0.85832 0.99463 0.92490 1.87301 1.46117 1.71616 1.18279 1.18405 0.81109 0.77504 0.82566 1.91094 1.49440 1.60344 1.39383 1.45664 1.25080 1.57548 1.09967 1.24337 0.95951 0.99773 1.02597 0.93276 0.77974 0.90711 0.90160 0.76749 0.87027 0.86172 0.71525 0.91146 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.84 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.25 -6.67 9.97 -15.06 -0.15 -6.82 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -16.81 5.31 -52.63 -0.28 -17.09 16 10 C 0.17 3.06 4.56 -67.11 -0.31 2.75 16 11 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 12 C -0.16 -2.21 7.58 -25.92 -0.20 -2.41 16 13 C 0.12 1.73 4.12 -67.12 -0.28 1.45 16 14 H 0.12 2.06 7.46 -51.93 -0.39 1.67 16 15 N -0.71 -6.75 5.35 -53.02 -0.28 -7.03 16 16 C 0.50 5.45 6.94 -10.99 -0.08 5.38 16 17 O -0.51 -8.63 16.20 5.56 0.09 -8.54 16 18 C 0.07 0.51 4.17 -68.19 -0.28 0.23 16 19 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16 20 C 0.06 0.33 7.87 37.73 0.30 0.63 16 21 O -0.32 -3.56 11.09 -37.84 -0.42 -3.98 16 22 C 0.65 8.41 9.16 53.71 0.49 8.90 16 23 O -0.52 -8.77 18.04 -19.11 -0.34 -9.11 16 24 N -0.71 -6.89 5.65 -59.36 -0.34 -7.22 16 25 C -0.18 -2.86 7.68 -25.92 -0.20 -3.06 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.39 9.91 7.90 -40.82 -0.32 9.58 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.08 0.81 8.12 -51.93 -0.42 0.38 16 30 H 0.40 2.14 8.73 -40.82 -0.36 1.79 16 31 H 0.11 0.65 7.73 -51.93 -0.40 0.25 16 32 H 0.12 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.44 3.85 8.96 -40.82 -0.37 3.49 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 LS Contribution 306.98 15.07 4.63 4.63 Total: -1.00 -36.37 306.98 -6.38 -42.75 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -4.34 Total: 8.98 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -0.80 Total: 6.69 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.17 Total: -58.25 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.67 Total: -21.64 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -36.37 -6.38 -42.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020120121.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.484 kcal (2) G-P(sol) polarization free energy of solvation -36.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds