Wall clock time and date at job start Mon Mar 30 2020 19:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99939 * 2 1 4 4 H 1.48498 * 109.47103 * 269.99873 * 3 2 1 5 5 H 1.48500 * 109.47292 * 30.00127 * 3 2 1 6 6 H 1.48503 * 109.47430 * 149.99773 * 3 2 1 7 7 C 1.38820 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99653 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99477 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99696 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.85141 * 23.79607 * 10 9 7 12 12 C 1.53783 * 113.61569 * 154.99663 * 10 9 7 13 13 C 1.53778 * 87.08056 * 89.19952 * 12 10 9 14 14 H 1.09006 * 113.61314 * 270.79920 * 13 12 10 15 15 N 1.46501 * 113.61198 * 139.98391 * 13 12 10 16 16 C 1.34780 * 119.99874 * 155.00011 * 15 13 12 17 17 O 1.21278 * 119.99868 * 359.97438 * 16 15 13 18 18 C 1.50694 * 119.99860 * 179.97438 * 16 15 13 19 19 H 1.08998 * 110.51083 * 321.28879 * 18 16 15 20 20 C 1.54097 * 110.68845 * 84.11651 * 18 16 15 21 21 O 1.45707 * 104.00726 * 118.63517 * 20 18 16 22 22 C 1.33774 * 109.47549 * 359.97438 * 21 20 18 23 23 O 1.21506 * 123.06746 * 180.02562 * 22 21 20 24 24 N 1.34000 * 113.85818 * 0.02562 * 22 21 20 25 25 C 1.53775 * 87.08266 * 25.43343 * 13 12 10 26 26 H 0.96991 * 120.00470 * 359.97438 * 1 2 3 27 27 H 0.96995 * 120.00771 * 359.97438 * 9 7 2 28 28 H 1.09000 * 113.60905 * 334.64949 * 12 10 9 29 29 H 1.09001 * 113.68893 * 203.75801 * 12 10 9 30 30 H 0.96995 * 120.00339 * 334.99341 * 15 13 12 31 31 H 1.09002 * 110.52144 * 0.02562 * 20 18 16 32 32 H 1.09003 * 110.51661 * 237.25971 * 20 18 16 33 33 H 0.97004 * 125.55743 * 179.97438 * 24 22 21 34 34 H 1.08996 * 113.62020 * 89.11829 * 25 13 12 35 35 H 1.09011 * 113.61243 * 220.02044 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0657 -3.5638 0.4058 12 6 1.2603 -4.8288 0.5961 13 6 0.7222 -5.0805 -0.8223 14 1 -0.1894 -4.5272 -1.0481 15 7 0.6268 -6.5004 -1.1703 16 6 -0.2513 -6.9067 -2.1087 17 8 -0.9627 -6.0970 -2.6645 18 6 -0.3490 -8.3672 -2.4670 19 1 0.6402 -8.8248 -2.4779 20 6 -1.2771 -9.1078 -1.4849 21 8 -2.3533 -9.6114 -2.3283 22 6 -2.1324 -9.2490 -3.5970 23 8 -2.8804 -9.5399 -4.5093 24 7 -1.0111 -8.5361 -3.7697 25 6 2.0010 -4.4033 -1.3427 26 1 -0.4850 0.8399 0.0004 27 1 0.3557 -2.3881 0.0005 28 1 0.4930 -4.5188 1.3055 29 1 1.8860 -5.6367 0.9755 30 1 1.1956 -7.1481 -0.7256 31 1 -1.6691 -8.4191 -0.7364 32 1 -0.7481 -9.9326 -1.0075 33 1 -0.6884 -8.1882 -4.6157 34 1 2.8304 -5.0941 -1.4940 35 1 1.8316 -3.7497 -2.1986 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020120121.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:43:24 Heat of formation + Delta-G solvation = -98.732737 kcal Electronic energy + Delta-G solvation = -20203.998675 eV Core-core repulsion = 16816.328706 eV Total energy + Delta-G solvation = -3387.669969 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.88349 -40.96111 -39.41799 -38.34706 -35.82815 -35.71088 -34.35215 -31.84331 -30.68723 -26.65678 -26.47648 -25.63458 -24.08275 -23.55748 -21.85902 -20.36282 -19.38121 -19.27282 -18.88961 -18.12374 -17.48246 -16.98826 -16.66380 -16.17063 -15.89000 -15.65433 -15.34009 -15.18498 -14.99418 -14.57600 -14.33517 -13.70671 -13.48195 -13.27788 -13.19724 -12.81077 -12.60735 -12.17554 -12.06293 -11.95510 -11.81333 -11.72195 -11.47152 -11.28545 -10.88540 -10.33968 -10.03197 -9.02653 -7.96494 -5.25807 1.28801 1.39887 1.47308 1.49092 1.57410 1.62868 2.02849 2.55111 2.59440 3.09766 3.36296 3.44305 3.66794 3.79018 3.85142 3.91860 4.07590 4.33054 4.36259 4.45651 4.49530 4.82201 4.87851 5.04027 5.16669 5.25701 5.33219 5.50755 5.62318 5.69337 6.06633 6.26421 6.51162 6.87884 7.20940 7.31085 8.08839 8.28220 9.27029 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.040128 B = 0.003370 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.604067 B = 8306.002922 C = 8607.897404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.079 4.079 3 Si 0.974 3.026 4 H -0.291 1.291 5 H -0.298 1.298 6 H -0.263 1.263 7 C -0.242 4.242 8 H 0.083 0.917 9 N -0.725 5.725 10 C 0.145 3.855 11 H 0.078 0.922 12 C -0.135 4.135 13 C 0.131 3.869 14 H 0.066 0.934 15 N -0.685 5.685 16 C 0.494 3.506 17 O -0.581 6.581 18 C 0.086 3.914 19 H 0.188 0.812 20 C 0.051 3.949 21 O -0.339 6.339 22 C 0.648 3.352 23 O -0.573 6.573 24 N -0.704 5.704 25 C -0.170 4.170 26 H 0.250 0.750 27 H 0.371 0.629 28 H 0.059 0.941 29 H 0.134 0.866 30 H 0.426 0.574 31 H 0.112 0.888 32 H 0.177 0.823 33 H 0.443 0.557 34 H 0.113 0.887 35 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.222 -22.814 1.265 23.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.218 1.218 5 H -0.225 1.225 6 H -0.188 1.188 7 C -0.374 4.374 8 H 0.101 0.899 9 N -0.363 5.363 10 C 0.034 3.966 11 H 0.096 0.904 12 C -0.174 4.174 13 C 0.025 3.975 14 H 0.084 0.916 15 N -0.337 5.337 16 C 0.278 3.722 17 O -0.460 6.460 18 C -0.023 4.023 19 H 0.205 0.795 20 C -0.023 4.023 21 O -0.249 6.249 22 C 0.401 3.599 23 O -0.461 6.461 24 N -0.376 5.376 25 C -0.212 4.212 26 H 0.059 0.941 27 H 0.202 0.798 28 H 0.078 0.922 29 H 0.152 0.848 30 H 0.266 0.734 31 H 0.130 0.870 32 H 0.195 0.805 33 H 0.288 0.712 34 H 0.131 0.869 35 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 6.244 -22.458 0.711 23.321 hybrid contribution -0.056 1.625 -0.550 1.717 sum 6.188 -20.833 0.161 21.733 Atomic orbital electron populations 1.69827 1.06830 1.26086 1.59562 1.25618 0.96317 1.01367 1.03773 0.85130 0.77906 0.79408 0.77267 1.21812 1.22485 1.18762 1.19722 0.91714 0.85065 1.40895 0.89898 1.42417 1.05312 1.01032 1.87496 1.21308 0.95906 0.84608 0.94775 0.90357 1.23744 1.00050 0.99164 0.94482 1.22198 0.97464 0.81000 0.96829 0.91570 1.45759 1.39441 1.08941 1.39578 1.21327 0.79772 0.91226 0.79844 1.90822 1.44890 1.56633 1.53667 1.22699 1.03069 0.92375 0.84133 0.79519 1.24819 0.84716 1.01392 0.91390 1.87267 1.48194 1.71648 1.17803 1.18574 0.81155 0.77475 0.82696 1.91038 1.51262 1.62525 1.41315 1.45718 1.24274 1.56242 1.11342 1.24187 0.98077 0.99584 0.99352 0.94115 0.79770 0.92210 0.84784 0.73405 0.87030 0.80521 0.71246 0.86894 0.95128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.06 13.06 21.65 0.28 -59.78 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 3 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 7 C -0.24 -13.08 9.97 84.04 0.84 -12.25 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 9 N -0.72 -35.19 5.31 -320.44 -1.70 -36.90 16 10 C 0.14 4.93 4.56 45.52 0.21 5.14 16 11 H 0.08 2.52 8.10 -2.39 -0.02 2.50 16 12 C -0.14 -3.24 7.58 31.12 0.24 -3.01 16 13 C 0.13 3.48 4.12 45.51 0.19 3.66 16 14 H 0.07 2.49 7.46 -2.38 -0.02 2.47 16 15 N -0.68 -10.46 5.35 -440.05 -2.36 -12.81 16 16 C 0.49 9.69 6.94 87.65 0.61 10.30 16 17 O -0.58 -19.78 16.20 -3.02 -0.05 -19.83 16 18 C 0.09 0.83 4.17 44.50 0.19 1.01 16 19 H 0.19 -0.36 8.14 -2.39 -0.02 -0.38 16 20 C 0.05 0.39 7.87 72.35 0.57 0.96 16 21 O -0.34 -6.88 11.09 -47.34 -0.53 -7.40 16 22 C 0.65 16.37 9.16 129.91 1.19 17.56 16 23 O -0.57 -19.98 18.04 19.67 0.35 -19.63 16 24 N -0.70 -12.46 5.65 -573.42 -3.24 -15.71 16 25 C -0.17 -4.98 7.68 31.12 0.24 -4.74 16 26 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 27 H 0.37 19.91 7.90 -92.71 -0.73 19.18 16 28 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 29 H 0.13 1.83 8.12 -2.39 -0.02 1.81 16 30 H 0.43 1.85 8.73 -92.71 -0.81 1.04 16 31 H 0.11 0.90 7.73 -2.39 -0.02 0.88 16 32 H 0.18 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H 0.44 7.32 8.96 -92.71 -0.83 6.49 16 34 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -88.10 306.98 -1.70 -89.80 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -1.22 Total: 19.94 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 4.73 Total: 14.61 kcal Atomic # 7 Polarization: -118.17 SS G_CDS: -7.02 Total: -125.19 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -0.22 Total: -46.86 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -88.10 -1.70 -89.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020120121.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.929 kcal (2) G-P(sol) polarization free energy of solvation -88.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds