Wall clock time and date at job start Mon Mar 30 2020 19:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 119.99965 * 2 1 4 4 H 1.48500 * 109.46858 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47026 * 300.00294 * 3 2 1 6 6 H 1.48497 * 109.46900 * 60.00468 * 3 2 1 7 7 C 1.37878 * 120.00333 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00236 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99563 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.47058 * 300.00249 * 9 7 2 11 11 O 1.42894 * 109.47390 * 59.99807 * 9 7 2 12 12 C 1.52997 * 109.47183 * 180.02562 * 9 7 2 13 13 N 1.46894 * 109.47143 * 179.97438 * 12 9 7 14 14 C 1.47846 * 110.99964 * 69.16077 * 13 12 9 15 15 C 1.54901 * 104.79876 * 146.36346 * 14 13 12 16 16 H 1.09000 * 110.99564 * 81.01711 * 15 14 13 17 17 C 1.50702 * 110.99125 * 204.83984 * 15 14 13 18 18 O 1.20824 * 120.00215 * 112.26299 * 17 15 14 19 19 O 1.34234 * 119.99733 * 292.26336 * 17 15 14 20 20 C 1.55143 * 101.65459 * 322.92523 * 15 14 13 21 21 H 1.09004 * 110.85913 * 277.20754 * 20 15 14 22 22 C 1.52996 * 110.70822 * 154.03503 * 20 15 14 23 23 C 1.53002 * 117.49888 * 116.20518 * 22 20 15 24 24 C 1.53000 * 117.50107 * 184.86280 * 22 20 15 25 25 C 1.47448 * 110.99987 * 189.99808 * 13 12 9 26 26 H 0.97006 * 119.99727 * 359.97438 * 1 2 3 27 27 H 0.96703 * 114.00308 * 59.99972 * 11 9 7 28 28 H 1.08998 * 109.46853 * 59.99782 * 12 9 7 29 29 H 1.09005 * 109.47172 * 299.99989 * 12 9 7 30 30 H 1.09003 * 110.37131 * 265.19353 * 14 13 12 31 31 H 1.09002 * 110.37200 * 27.41888 * 14 13 12 32 32 H 0.96698 * 116.99569 * 179.97438 * 19 17 15 33 33 H 1.09002 * 115.54951 * 330.53492 * 22 20 15 34 34 H 1.09000 * 117.49996 * 215.00804 * 23 22 20 35 35 H 1.08999 * 117.49664 * 0.02562 * 23 22 20 36 36 H 1.09008 * 117.49673 * 359.97438 * 24 22 20 37 37 H 1.08999 * 117.49942 * 144.97366 * 24 22 20 38 38 H 1.08996 * 109.88720 * 117.33917 * 25 13 12 39 39 H 1.08997 * 109.88648 * 356.14955 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5570 0.8897 11 8 0.4290 -2.5746 -1.1669 12 6 2.2452 -3.6621 -0.0005 13 7 1.5107 -4.9342 0.0001 14 6 0.8201 -5.1479 -1.2896 15 6 0.8624 -6.6803 -1.5119 16 1 0.0753 -7.1788 -0.9461 17 6 0.7659 -7.0160 -2.9779 18 8 1.7135 -7.4997 -3.5505 19 8 -0.3729 -6.7776 -3.6474 20 6 2.2633 -7.0399 -0.9506 21 1 3.0376 -6.8630 -1.6971 22 6 2.2977 -8.4926 -0.4720 23 6 3.2399 -9.4539 -1.1994 24 6 3.5742 -8.9794 0.2170 25 6 2.4206 -6.0696 0.2391 26 1 -0.4850 0.8401 0.0004 27 1 0.9207 -2.5291 -1.9983 28 1 2.8718 -3.6043 0.8894 29 1 2.8719 -3.6043 -0.8906 30 1 -0.2117 -4.8014 -1.2295 31 1 1.3468 -4.6316 -2.0922 32 1 -0.3868 -7.0092 -4.5861 33 1 1.3489 -8.8923 -0.1141 34 1 2.9109 -10.4861 -1.3202 35 1 3.8355 -9.0512 -2.0187 36 1 4.3896 -8.2647 0.3288 37 1 3.4651 -9.6990 1.0284 38 1 2.1492 -6.5733 1.1668 39 1 3.4497 -5.7147 0.2946 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574479610.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:40:54 Heat of formation + Delta-G solvation = -114.386713 kcal Electronic energy + Delta-G solvation = -21360.205613 eV Core-core repulsion = 18075.397180 eV Total energy + Delta-G solvation = -3284.808433 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.62152 -38.83578 -36.98633 -36.04734 -35.19811 -32.13337 -31.72254 -28.97260 -27.98342 -24.80246 -23.79692 -22.49165 -21.77878 -20.74569 -20.34099 -19.65511 -17.96914 -17.07996 -16.68674 -16.05333 -15.43675 -14.96933 -14.61920 -14.48746 -14.28185 -13.81871 -13.67201 -12.99999 -12.87563 -12.57566 -12.34906 -11.88390 -11.75571 -11.57412 -11.45415 -11.31049 -11.06234 -10.95241 -10.84221 -10.70417 -10.52639 -10.43715 -10.19833 -10.01508 -9.93825 -9.00009 -8.57359 -8.13955 -7.73726 -6.00561 -4.18922 2.22480 3.03968 3.26602 3.35038 3.38033 3.70631 4.32677 4.41181 4.48581 4.63917 4.79899 4.92815 5.11073 5.23713 5.26733 5.38248 5.46636 5.51957 5.54316 5.58886 5.84272 5.86168 6.02672 6.07940 6.08697 6.14858 6.24059 6.29704 6.42743 6.50619 6.56564 6.84351 7.39777 7.52037 7.76453 7.91714 7.93252 8.19969 8.84498 9.37433 9.58121 11.03533 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025911 B = 0.004713 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.375925 B = 5939.485533 C = 6621.230946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.081 3.919 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.574 4.574 8 H 0.054 0.946 9 C 0.235 3.765 10 H 0.064 0.936 11 O -0.560 6.560 12 C 0.026 3.974 13 N -0.520 5.520 14 C 0.077 3.923 15 C -0.095 4.095 16 H 0.118 0.882 17 C 0.492 3.508 18 O -0.517 6.517 19 O -0.511 6.511 20 C -0.062 4.062 21 H 0.087 0.913 22 C -0.140 4.140 23 C -0.174 4.174 24 C -0.178 4.178 25 C 0.047 3.953 26 H 0.260 0.740 27 H 0.338 0.662 28 H 0.070 0.930 29 H 0.024 0.976 30 H 0.105 0.895 31 H 0.047 0.953 32 H 0.406 0.594 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.823 -16.364 -3.235 16.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.125 4.125 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.612 4.612 8 H 0.073 0.927 9 C 0.177 3.823 10 H 0.082 0.918 11 O -0.362 6.362 12 C -0.102 4.102 13 N -0.244 5.244 14 C -0.051 4.051 15 C -0.115 4.115 16 H 0.136 0.864 17 C 0.335 3.665 18 O -0.405 6.405 19 O -0.322 6.322 20 C -0.081 4.081 21 H 0.105 0.895 22 C -0.159 4.159 23 C -0.211 4.211 24 C -0.215 4.215 25 C -0.081 4.081 26 H 0.069 0.931 27 H 0.182 0.818 28 H 0.088 0.912 29 H 0.042 0.958 30 H 0.124 0.876 31 H 0.065 0.935 32 H 0.264 0.736 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.087 -16.278 -2.085 16.543 hybrid contribution 1.619 0.790 -1.661 2.450 sum 3.706 -15.488 -3.746 16.359 Atomic orbital electron populations 1.70091 1.05882 1.26278 1.46981 1.25013 0.94669 0.99041 0.93824 0.86637 0.80205 0.83952 0.77694 1.19781 1.20930 1.20841 1.21663 0.93145 0.91581 1.54841 0.92734 1.19385 0.88049 0.88505 0.86331 0.91783 1.86619 1.38424 1.96032 1.15140 1.23302 0.97173 0.90032 0.99697 1.63708 1.27687 1.02102 1.30914 1.23007 1.02476 0.88750 0.90873 1.22394 1.00195 1.00889 0.88009 0.86387 1.23274 0.79428 0.73537 0.90294 1.90683 1.38554 1.41201 1.70050 1.84601 1.39531 1.79003 1.29095 1.21935 0.95289 0.93239 0.97677 0.89466 1.22185 0.95099 0.94129 1.04468 1.22975 1.03543 0.99111 0.95461 1.22936 0.99135 1.03658 0.95740 1.22945 0.96212 0.91393 0.97592 0.93051 0.81826 0.91162 0.95809 0.87643 0.93498 0.73563 0.87767 0.89248 0.88651 0.88782 0.88884 0.90281 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.10 12.84 55.43 0.71 -24.39 16 2 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.57 -15.54 8.76 -34.44 -0.30 -15.84 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.24 5.83 3.08 -27.88 -0.09 5.74 16 10 H 0.06 1.79 8.14 -51.93 -0.42 1.37 16 11 O -0.56 -13.76 10.02 -35.23 -0.35 -14.11 16 12 C 0.03 0.52 4.36 -3.83 -0.02 0.50 16 13 N -0.52 -9.11 5.16 -231.25 -1.19 -10.31 16 14 C 0.08 1.26 4.47 -2.30 -0.01 1.25 16 15 C -0.10 -1.28 2.99 -89.63 -0.27 -1.54 16 16 H 0.12 1.44 7.91 -51.93 -0.41 1.03 16 17 C 0.49 6.62 7.64 36.01 0.28 6.89 16 18 O -0.52 -7.96 16.48 -18.75 -0.31 -8.27 16 19 O -0.51 -5.78 13.42 -39.27 -0.53 -6.31 16 20 C -0.06 -0.81 2.24 -88.79 -0.20 -1.01 16 21 H 0.09 1.26 7.22 -51.93 -0.37 0.89 16 22 C -0.14 -1.56 5.08 -90.62 -0.46 -2.02 16 23 C -0.17 -1.84 10.19 -26.69 -0.27 -2.11 16 24 C -0.18 -1.75 9.98 -26.70 -0.27 -2.02 16 25 C 0.05 0.67 6.21 -2.83 -0.02 0.65 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.34 7.55 8.41 45.56 0.38 7.94 16 28 H 0.07 1.39 8.03 -51.93 -0.42 0.98 16 29 H 0.02 0.48 7.85 -51.93 -0.41 0.07 16 30 H 0.11 1.91 7.38 -51.93 -0.38 1.52 16 31 H 0.05 0.81 6.73 -51.93 -0.35 0.46 16 32 H 0.41 2.75 9.10 45.56 0.41 3.16 16 33 H 0.10 1.08 7.95 -51.93 -0.41 0.67 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 36 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 1.07 7.82 -51.93 -0.41 0.66 16 39 H 0.05 0.77 7.55 -51.93 -0.39 0.38 16 LS Contribution 321.82 15.07 4.85 4.85 Total: -1.00 -31.40 321.82 -7.97 -39.37 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -4.41 Total: 10.55 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -1.72 Total: -7.37 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: -0.48 Total: -34.70 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -1.19 Total: -28.69 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.40 -7.97 -39.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479610.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.020 kcal (2) G-P(sol) polarization free energy of solvation -31.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds