Wall clock time and date at job start Mon Mar 30 2020 19:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47285 * 2 1 4 4 H 1.08999 * 109.46843 * 55.61297 * 3 2 1 5 5 C 1.50695 * 109.47207 * 175.61505 * 3 2 1 6 6 C 1.38227 * 119.98951 * 101.62811 * 5 3 2 7 7 C 1.38192 * 120.05342 * 179.76520 * 6 5 3 8 8 C 1.38499 * 120.01940 * 0.50807 * 7 6 5 9 9 F 1.35104 * 120.00668 * 179.76568 * 8 7 6 10 10 C 1.38392 * 119.97613 * 359.74832 * 8 7 6 11 11 C 1.38439 * 119.95497 * 359.97438 * 10 8 7 12 12 F 1.35098 * 120.01797 * 180.02562 * 11 10 8 13 13 N 1.46894 * 109.46797 * 295.61795 * 3 2 1 14 14 C 1.46906 * 111.00098 * 321.99206 * 13 3 2 15 15 C 1.46898 * 111.00592 * 85.94928 * 13 3 2 16 16 C 1.50698 * 109.47257 * 163.60612 * 15 13 3 17 17 H 1.07995 * 120.00113 * 0.02562 * 16 15 13 18 18 C 1.37877 * 119.99967 * 179.72822 * 16 15 13 19 19 N 1.31511 * 120.00260 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 119.99918 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46721 * 90.00388 * 20 18 16 22 22 H 1.48501 * 109.47158 * 210.00344 * 20 18 16 23 23 H 1.48500 * 109.47002 * 330.00449 * 20 18 16 24 24 H 1.09003 * 109.46936 * 72.04314 * 1 2 3 25 25 H 1.08995 * 109.46802 * 192.04073 * 1 2 3 26 26 H 1.08994 * 109.47225 * 312.04035 * 1 2 3 27 27 H 1.09002 * 109.47634 * 239.99681 * 2 1 3 28 28 H 1.09010 * 109.47047 * 119.99820 * 2 1 3 29 29 H 1.07998 * 119.97136 * 0.02562 * 6 5 3 30 30 H 1.07999 * 119.98783 * 180.25658 * 7 6 5 31 31 H 1.08001 * 120.02240 * 180.02562 * 10 8 7 32 32 H 1.09001 * 109.46873 * 191.96707 * 14 13 3 33 33 H 1.08998 * 109.46757 * 311.97302 * 14 13 3 34 34 H 1.08998 * 109.46564 * 71.96601 * 14 13 3 35 35 H 1.09008 * 109.46671 * 43.60781 * 15 13 3 36 36 H 1.08993 * 109.47059 * 283.61262 * 15 13 3 37 37 H 0.97002 * 120.00425 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6140 1.9785 0.8481 5 6 3.5431 1.4439 0.1086 6 6 4.3170 1.6558 -1.0169 7 6 5.6953 1.6622 -0.9180 8 6 6.3030 1.4456 0.3076 9 9 7.6507 1.4472 0.4032 10 6 5.5293 1.2281 1.4342 11 6 4.1485 1.2276 1.3350 12 9 3.3920 1.0158 2.4340 13 7 1.6387 2.1037 -1.2488 14 6 1.7263 1.1782 -2.3863 15 6 0.2883 2.6704 -1.1341 16 6 0.0647 3.6644 -2.2446 17 1 0.8473 3.8556 -2.9638 18 6 -1.1412 4.3251 -2.3459 19 7 -1.3366 5.1921 -3.3152 20 14 -2.4981 3.9876 -1.1071 21 1 -2.3653 4.9223 0.0392 22 1 -3.8199 4.1835 -1.7550 23 1 -2.3876 2.5889 -0.6207 24 1 -0.3633 0.3168 -0.9776 25 1 -0.3633 -1.0050 0.2144 26 1 -0.3633 0.6881 0.7632 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8901 29 1 3.8439 1.8208 -1.9737 30 1 6.2989 1.8320 -1.7973 31 1 6.0024 1.0595 2.3903 32 1 1.6326 1.7370 -3.3174 33 1 2.6885 0.6664 -2.3649 34 1 0.9230 0.4445 -2.3203 35 1 0.1852 3.1717 -0.1716 36 1 -0.4487 1.8709 -1.2082 37 1 -2.1849 5.6572 -3.3863 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083217841.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:42:13 Heat of formation + Delta-G solvation = -49.085569 kcal Electronic energy + Delta-G solvation = -20992.120398 eV Core-core repulsion = 17599.056120 eV Total energy + Delta-G solvation = -3393.064278 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.00062 -48.93548 -39.59561 -37.45297 -33.03596 -31.66568 -31.07885 -30.53569 -28.00283 -26.69531 -24.31877 -23.04956 -22.28102 -20.94808 -19.58833 -18.16773 -17.20708 -16.92046 -15.98081 -15.85585 -15.57879 -15.27827 -15.25346 -14.67460 -14.49689 -14.35213 -13.88261 -13.33819 -12.98890 -12.54682 -12.40945 -12.23527 -12.09698 -11.65846 -11.55614 -11.49752 -11.18387 -11.03674 -10.88385 -10.63047 -10.43198 -10.27367 -9.88599 -9.34717 -8.99217 -8.59306 -8.48948 -7.39841 -6.07232 -4.03978 1.00333 1.08156 3.26081 3.33687 3.34577 3.42760 3.89311 4.39129 4.41738 4.50355 4.70078 4.82249 4.92448 5.19365 5.23043 5.28531 5.34233 5.50920 5.78738 5.81207 5.83717 5.93559 5.95111 5.99974 6.12121 6.16680 6.20942 6.28784 6.43808 6.47832 6.59518 6.83007 6.84796 6.96397 7.56183 7.80800 7.93749 8.62061 9.02049 9.54514 11.05999 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.024772 B = 0.005357 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.023655 B = 5225.237135 C = 5689.715394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.145 4.145 3 C 0.116 3.884 4 H 0.089 0.911 5 C -0.101 4.101 6 C -0.044 4.044 7 C -0.165 4.165 8 C 0.114 3.886 9 F -0.138 7.138 10 C -0.196 4.196 11 C 0.125 3.875 12 F -0.132 7.132 13 N -0.520 5.520 14 C 0.021 3.979 15 C 0.154 3.846 16 C -0.507 4.507 17 H 0.080 0.920 18 C 0.069 3.931 19 N -0.900 5.900 20 Si 0.870 3.130 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.266 1.266 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.162 0.838 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.027 0.973 35 H 0.021 0.979 36 H 0.008 0.992 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.988 -11.008 7.251 17.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.184 4.184 3 C 0.006 3.994 4 H 0.107 0.893 5 C -0.102 4.102 6 C -0.062 4.062 7 C -0.184 4.184 8 C 0.095 3.905 9 F -0.117 7.117 10 C -0.216 4.216 11 C 0.105 3.895 12 F -0.111 7.111 13 N -0.242 5.242 14 C -0.126 4.126 15 C 0.028 3.972 16 C -0.545 4.545 17 H 0.098 0.902 18 C -0.133 4.133 19 N -0.539 5.539 20 Si 0.698 3.302 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.191 1.191 24 H 0.092 0.908 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.179 0.821 30 H 0.157 0.843 31 H 0.160 0.840 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.039 0.961 36 H 0.026 0.974 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.178 -10.490 7.128 16.906 hybrid contribution -1.192 -0.649 1.128 1.765 sum 9.985 -11.139 8.256 17.087 Atomic orbital electron populations 1.22117 0.95212 1.01093 1.03386 1.22172 0.96748 0.97193 1.02294 1.20641 0.89110 0.93791 0.95840 0.89328 1.20130 0.97403 1.01141 0.91572 1.21245 0.91463 0.93495 0.99994 1.21293 0.95931 1.04538 0.96632 1.17303 0.76771 1.02271 0.94144 1.91499 1.29174 1.94042 1.96976 1.20870 0.92427 1.08633 0.99650 1.17144 0.87885 1.01588 0.82867 1.91499 1.75712 1.92091 1.51767 1.62108 1.29778 1.31772 1.00578 1.22559 0.99009 0.95360 0.95721 1.20511 0.83943 0.94827 0.97872 1.21024 1.00451 1.21436 1.11634 0.90178 1.24876 0.98122 0.94911 0.95354 1.69884 1.24972 1.27113 1.31979 0.86936 0.82014 0.79264 0.82020 1.20202 1.21234 1.19120 0.90818 0.93206 0.92613 0.91083 0.92188 0.82090 0.84254 0.83955 0.90482 0.92792 0.95446 0.96122 0.97433 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 8.29 37.16 0.31 -2.12 16 2 C -0.15 -2.08 4.85 -26.73 -0.13 -2.21 16 3 C 0.12 1.88 1.87 -68.87 -0.13 1.76 16 4 H 0.09 1.55 7.34 -51.93 -0.38 1.17 16 5 C -0.10 -1.48 5.08 -104.55 -0.53 -2.01 16 6 C -0.04 -0.60 8.41 -39.60 -0.33 -0.94 16 7 C -0.17 -2.00 10.03 -39.50 -0.40 -2.39 16 8 C 0.11 1.42 7.30 -39.43 -0.29 1.13 16 9 F -0.14 -1.71 17.27 2.25 0.04 -1.67 16 10 C -0.20 -2.42 10.01 -39.45 -0.39 -2.82 16 11 C 0.13 1.73 7.19 -39.43 -0.28 1.45 16 12 F -0.13 -1.88 16.57 2.25 0.04 -1.84 16 13 N -0.52 -9.86 3.92 -237.73 -0.93 -10.79 16 14 C 0.02 0.36 6.85 60.07 0.41 0.77 16 15 C 0.15 3.49 3.04 -4.98 -0.02 3.48 16 16 C -0.51 -13.81 9.27 -34.44 -0.32 -14.13 16 17 H 0.08 2.38 7.78 -52.49 -0.41 1.97 16 18 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 19 N -0.90 -27.06 13.96 55.43 0.77 -26.29 16 20 Si 0.87 20.94 27.47 -169.99 -4.67 16.27 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.08 6.53 56.52 0.37 -5.71 16 24 H 0.07 1.25 4.27 -51.93 -0.22 1.02 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.88 8.03 -51.93 -0.42 0.46 16 27 H 0.07 0.96 6.10 -51.93 -0.32 0.65 16 28 H 0.06 0.80 7.98 -51.92 -0.41 0.39 16 29 H 0.16 2.25 5.02 -52.49 -0.26 1.99 16 30 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 31 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.08 1.42 7.53 -51.93 -0.39 1.03 16 33 H 0.05 0.74 5.29 -51.93 -0.27 0.47 16 34 H 0.03 0.45 5.38 -51.93 -0.28 0.17 16 35 H 0.02 0.48 7.06 -51.92 -0.37 0.12 16 36 H 0.01 0.18 3.91 -51.93 -0.20 -0.02 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 295.87 15.07 4.46 4.46 Total: -1.00 -28.85 295.87 -6.86 -35.71 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -4.37 Total: 0.34 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: -2.20 Total: -16.19 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: -0.16 Total: -37.08 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.08 Total: -3.51 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.85 -6.86 -35.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217841.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.373 kcal (2) G-P(sol) polarization free energy of solvation -28.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds