Wall clock time and date at job start Mon Mar 30 2020 19:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47285 * 2 1 4 4 H 1.08999 * 109.46843 * 55.61297 * 3 2 1 5 5 C 1.50695 * 109.47207 * 175.61505 * 3 2 1 6 6 C 1.38227 * 119.98951 * 101.62811 * 5 3 2 7 7 C 1.38192 * 120.05342 * 179.76520 * 6 5 3 8 8 C 1.38499 * 120.01940 * 0.50807 * 7 6 5 9 9 F 1.35104 * 120.00668 * 179.76568 * 8 7 6 10 10 C 1.38392 * 119.97613 * 359.74832 * 8 7 6 11 11 C 1.38439 * 119.95497 * 359.97438 * 10 8 7 12 12 F 1.35098 * 120.01797 * 180.02562 * 11 10 8 13 13 N 1.46894 * 109.46797 * 295.61795 * 3 2 1 14 14 C 1.46906 * 111.00098 * 321.99206 * 13 3 2 15 15 C 1.46898 * 111.00592 * 85.94928 * 13 3 2 16 16 C 1.50698 * 109.47257 * 163.60612 * 15 13 3 17 17 H 1.07995 * 120.00113 * 0.02562 * 16 15 13 18 18 C 1.37877 * 119.99967 * 179.72822 * 16 15 13 19 19 N 1.31511 * 120.00260 * 180.02562 * 18 16 15 20 20 Si 1.86808 * 119.99918 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46721 * 90.00388 * 20 18 16 22 22 H 1.48501 * 109.47158 * 210.00344 * 20 18 16 23 23 H 1.48500 * 109.47002 * 330.00449 * 20 18 16 24 24 H 1.09003 * 109.46936 * 72.04314 * 1 2 3 25 25 H 1.08995 * 109.46802 * 192.04073 * 1 2 3 26 26 H 1.08994 * 109.47225 * 312.04035 * 1 2 3 27 27 H 1.09002 * 109.47634 * 239.99681 * 2 1 3 28 28 H 1.09010 * 109.47047 * 119.99820 * 2 1 3 29 29 H 1.07998 * 119.97136 * 0.02562 * 6 5 3 30 30 H 1.07999 * 119.98783 * 180.25658 * 7 6 5 31 31 H 1.08001 * 120.02240 * 180.02562 * 10 8 7 32 32 H 1.09001 * 109.46873 * 191.96707 * 14 13 3 33 33 H 1.08998 * 109.46757 * 311.97302 * 14 13 3 34 34 H 1.08998 * 109.46564 * 71.96601 * 14 13 3 35 35 H 1.09008 * 109.46671 * 43.60781 * 15 13 3 36 36 H 1.08993 * 109.47059 * 283.61262 * 15 13 3 37 37 H 0.97002 * 120.00425 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6140 1.9785 0.8481 5 6 3.5431 1.4439 0.1086 6 6 4.3170 1.6558 -1.0169 7 6 5.6953 1.6622 -0.9180 8 6 6.3030 1.4456 0.3076 9 9 7.6507 1.4472 0.4032 10 6 5.5293 1.2281 1.4342 11 6 4.1485 1.2276 1.3350 12 9 3.3920 1.0158 2.4340 13 7 1.6387 2.1037 -1.2488 14 6 1.7263 1.1782 -2.3863 15 6 0.2883 2.6704 -1.1341 16 6 0.0647 3.6644 -2.2446 17 1 0.8473 3.8556 -2.9638 18 6 -1.1412 4.3251 -2.3459 19 7 -1.3366 5.1921 -3.3152 20 14 -2.4981 3.9876 -1.1071 21 1 -2.3653 4.9223 0.0392 22 1 -3.8199 4.1835 -1.7550 23 1 -2.3876 2.5889 -0.6207 24 1 -0.3633 0.3168 -0.9776 25 1 -0.3633 -1.0050 0.2144 26 1 -0.3633 0.6881 0.7632 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8901 29 1 3.8439 1.8208 -1.9737 30 1 6.2989 1.8320 -1.7973 31 1 6.0024 1.0595 2.3903 32 1 1.6326 1.7370 -3.3174 33 1 2.6885 0.6664 -2.3649 34 1 0.9230 0.4445 -2.3203 35 1 0.1852 3.1717 -0.1716 36 1 -0.4487 1.8709 -1.2082 37 1 -2.1849 5.6572 -3.3863 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083217841.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:42:13 Heat of formation + Delta-G solvation = -65.609540 kcal Electronic energy + Delta-G solvation = -20992.836931 eV Core-core repulsion = 17599.056120 eV Total energy + Delta-G solvation = -3393.780811 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.129 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.00693 -49.96865 -40.80003 -38.68705 -34.95986 -33.21856 -32.20195 -31.58748 -29.77128 -27.96701 -25.91642 -24.11100 -23.35163 -22.59374 -20.92203 -19.22554 -18.95605 -18.21351 -17.07006 -16.95585 -16.80998 -16.57333 -16.30702 -16.17946 -15.99815 -15.46541 -15.30869 -14.77978 -14.37624 -13.96195 -13.78445 -13.47631 -13.36728 -13.08074 -12.90335 -12.82586 -12.71016 -12.29017 -12.22228 -12.13964 -12.00423 -11.71060 -11.63436 -11.33980 -10.74077 -10.00263 -9.56091 -8.90214 -8.24761 -6.26027 -0.03181 0.06975 1.35946 1.36435 1.46326 2.36004 2.39319 2.87547 3.08875 3.12858 3.44441 3.61437 3.71878 3.95608 4.01258 4.10657 4.24902 4.35794 4.47762 4.58712 4.71209 4.78361 4.82627 4.85960 4.94658 4.97764 5.01187 5.06455 5.11681 5.18231 5.27769 5.37891 5.42850 5.59856 5.80848 6.02496 6.38203 6.66318 6.80591 7.36781 8.91895 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.024772 B = 0.005357 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.023655 B = 5225.237135 C = 5689.715394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.138 4.138 3 C 0.118 3.882 4 H 0.074 0.926 5 C -0.113 4.113 6 C -0.053 4.053 7 C -0.156 4.156 8 C 0.114 3.886 9 F -0.136 7.136 10 C -0.188 4.188 11 C 0.118 3.882 12 F -0.136 7.136 13 N -0.533 5.533 14 C 0.026 3.974 15 C 0.165 3.835 16 C -0.509 4.509 17 H 0.040 0.960 18 C 0.009 3.991 19 N -0.950 5.950 20 Si 0.937 3.063 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.245 1.245 24 H 0.052 0.948 25 H 0.073 0.927 26 H 0.045 0.955 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.155 0.845 30 H 0.162 0.838 31 H 0.164 0.836 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.032 0.968 35 H 0.016 0.984 36 H 0.017 0.983 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.762 -12.787 8.876 19.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.177 4.177 3 C 0.009 3.991 4 H 0.092 0.908 5 C -0.115 4.115 6 C -0.071 4.071 7 C -0.175 4.175 8 C 0.095 3.905 9 F -0.115 7.115 10 C -0.207 4.207 11 C 0.098 3.902 12 F -0.115 7.115 13 N -0.256 5.256 14 C -0.121 4.121 15 C 0.038 3.962 16 C -0.547 4.547 17 H 0.058 0.942 18 C -0.188 4.188 19 N -0.591 5.591 20 Si 0.761 3.239 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.168 1.168 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.172 0.828 30 H 0.179 0.821 31 H 0.181 0.819 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.051 0.949 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.976 -12.293 8.764 19.271 hybrid contribution -1.283 -0.084 0.584 1.412 sum 10.693 -12.378 9.348 18.840 Atomic orbital electron populations 1.22084 0.95698 1.02225 1.01745 1.22117 0.96211 0.95903 1.03467 1.20599 0.90356 0.94590 0.93595 0.90828 1.20032 0.96416 1.02548 0.92494 1.21187 0.92175 0.94296 0.99445 1.21471 0.95397 1.03092 0.97492 1.17353 0.76876 1.02049 0.94239 1.91513 1.28987 1.93990 1.96962 1.21051 0.91759 1.07272 1.00633 1.17161 0.88414 1.02248 0.82397 1.91490 1.75915 1.92206 1.51843 1.61934 1.27486 1.33560 1.02581 1.22531 1.01018 0.94769 0.93796 1.20253 0.86419 0.94036 0.95459 1.21302 0.99335 1.22142 1.11929 0.94198 1.25759 1.00943 0.94717 0.97384 1.70043 1.25874 1.28813 1.34355 0.85863 0.78435 0.80279 0.79320 1.19669 1.21022 1.16811 0.92890 0.90843 0.93538 0.90075 0.90714 0.82762 0.82084 0.81870 0.93053 0.89553 0.94929 0.96605 0.96585 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.49 8.29 71.98 0.60 -3.89 16 2 C -0.14 -3.65 4.85 30.60 0.15 -3.50 16 3 C 0.12 3.69 1.87 44.17 0.08 3.77 16 4 H 0.07 2.52 7.34 -2.39 -0.02 2.50 16 5 C -0.11 -3.15 5.08 -19.82 -0.10 -3.25 16 6 C -0.05 -1.37 8.41 22.26 0.19 -1.18 16 7 C -0.16 -3.39 10.03 22.32 0.22 -3.17 16 8 C 0.11 2.52 7.30 22.37 0.16 2.68 16 9 F -0.14 -2.97 17.27 44.97 0.78 -2.19 16 10 C -0.19 -4.12 10.01 22.35 0.22 -3.89 16 11 C 0.12 3.01 7.19 22.37 0.16 3.17 16 12 F -0.14 -3.60 16.57 44.97 0.75 -2.86 16 13 N -0.53 -20.11 3.92 -906.06 -3.55 -23.66 16 14 C 0.03 0.87 6.85 127.69 0.88 1.75 16 15 C 0.17 7.48 3.04 85.56 0.26 7.74 16 16 C -0.51 -28.49 9.27 25.60 0.24 -28.25 16 17 H 0.04 2.49 7.78 -2.91 -0.02 2.47 16 18 C 0.01 0.51 5.47 84.66 0.46 0.97 16 19 N -0.95 -58.83 13.96 21.45 0.30 -58.53 16 20 Si 0.94 43.30 27.47 68.60 1.88 45.18 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.24 -10.33 6.53 99.48 0.65 -9.68 16 24 H 0.05 1.70 4.27 -2.39 -0.01 1.69 16 25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.05 1.37 8.03 -2.39 -0.02 1.35 16 27 H 0.08 1.98 6.10 -2.39 -0.01 1.97 16 28 H 0.07 1.78 7.98 -2.38 -0.02 1.76 16 29 H 0.16 4.16 5.02 -2.91 -0.01 4.14 16 30 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 31 H 0.16 2.85 8.06 -2.91 -0.02 2.82 16 32 H 0.05 1.94 7.53 -2.39 -0.02 1.93 16 33 H 0.09 2.26 5.29 -2.39 -0.01 2.25 16 34 H 0.03 1.04 5.38 -2.39 -0.01 1.03 16 35 H 0.02 0.73 7.06 -2.38 -0.02 0.72 16 36 H 0.02 0.73 3.91 -2.39 -0.01 0.72 16 37 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -63.01 295.87 4.72 -58.29 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 1.04 Total: 10.82 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 3.52 Total: -27.05 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -3.25 Total: -82.19 kcal Atomic # 9 Polarization: -6.57 SS G_CDS: 1.52 Total: -5.05 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.88 Total: 45.18 kcal Total: -63.01 4.72 -58.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083217841.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.318 kcal (2) G-P(sol) polarization free energy of solvation -63.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds