Wall clock time and date at job start Mon Mar 30 2020 19:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47473 * 2 1 4 4 H 1.09006 * 109.47216 * 304.99940 * 3 2 1 5 5 N 1.46498 * 109.47218 * 64.99575 * 3 2 1 6 6 C 1.34774 * 120.00114 * 275.00621 * 5 3 2 7 7 C 1.50697 * 120.00066 * 180.27514 * 6 5 3 8 8 O 1.21284 * 120.00271 * 359.97438 * 6 5 3 9 9 C 1.50700 * 109.47251 * 184.99801 * 3 2 1 10 10 O 1.20832 * 119.99897 * 239.99486 * 9 3 2 11 11 O 1.34225 * 120.00052 * 60.00294 * 9 3 2 12 12 C 1.45203 * 116.99973 * 180.02562 * 11 9 3 13 13 C 1.53002 * 109.46858 * 179.97438 * 12 11 9 14 14 C 1.50698 * 115.55143 * 65.10864 * 13 12 11 15 15 H 1.08001 * 119.99816 * 266.11047 * 14 13 12 16 16 C 1.37879 * 120.00357 * 86.10701 * 14 13 12 17 17 N 1.31514 * 119.99576 * 353.70840 * 16 14 13 18 18 Si 1.86794 * 120.00016 * 173.70690 * 16 14 13 19 19 H 1.48494 * 109.47457 * 60.00104 * 18 16 14 20 20 H 1.48504 * 109.47331 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47081 * 299.99965 * 18 16 14 22 22 C 1.53004 * 117.49810 * 279.43205 * 13 12 11 23 23 C 1.53005 * 117.49770 * 210.77451 * 13 12 11 24 24 H 1.09002 * 109.47235 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47589 * 300.00119 * 1 2 3 26 26 H 1.09001 * 109.47080 * 60.00504 * 1 2 3 27 27 H 1.09001 * 109.47180 * 239.99546 * 2 1 3 28 28 H 1.09004 * 109.47429 * 119.99889 * 2 1 3 29 29 H 0.96998 * 120.00008 * 95.00045 * 5 3 2 30 30 H 1.09005 * 109.47659 * 179.72199 * 7 6 5 31 31 H 1.09000 * 109.47409 * 299.71993 * 7 6 5 32 32 H 1.09004 * 109.47460 * 59.72260 * 7 6 5 33 33 H 1.09001 * 109.47076 * 299.99131 * 12 11 9 34 34 H 1.08997 * 109.46994 * 59.99796 * 12 11 9 35 35 H 0.97002 * 119.99231 * 179.97438 * 17 16 14 36 36 H 1.08992 * 117.49928 * 0.02562 * 22 13 12 37 37 H 1.08999 * 117.49455 * 145.02503 * 22 13 12 38 38 H 1.08998 * 117.49864 * 214.98450 * 23 13 12 39 39 H 1.09000 * 117.49610 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 7 1.6524 2.0975 1.2517 6 6 0.4351 2.6644 1.3669 7 6 0.0387 3.3436 2.6523 8 8 -0.3394 2.6326 0.4340 9 6 3.5419 1.4442 -0.1238 10 8 4.2191 1.9416 0.7445 11 8 4.1274 0.8933 -1.1987 12 6 5.5780 0.9305 -1.2508 13 6 6.0593 0.2597 -2.5389 14 6 5.6723 0.9559 -3.8182 15 1 4.7762 0.6606 -4.3439 16 6 6.4619 1.9699 -4.3175 17 7 7.4828 2.4137 -3.6172 18 14 6.0817 2.7131 -5.9885 19 1 4.7165 3.2969 -5.9716 20 1 7.0718 3.7770 -6.2940 21 1 6.1551 1.6558 -7.0288 22 6 6.1237 -1.2689 -2.5580 23 6 7.4150 -0.4487 -2.5025 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.2718 2.1231 1.9977 30 1 -0.9708 3.7434 2.5559 31 1 0.0670 2.6217 3.4685 32 1 0.7331 4.1571 2.8626 33 1 5.9157 1.9667 -1.2323 34 1 5.9862 0.3998 -0.3907 35 1 8.0386 3.1268 -3.9687 36 1 5.8227 -1.7965 -1.6530 37 1 5.8864 -1.7709 -3.4959 38 1 8.0267 -0.4115 -3.4039 39 1 7.9641 -0.4365 -1.5610 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869676708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:40:32 Heat of formation + Delta-G solvation = -107.996468 kcal Electronic energy + Delta-G solvation = -21047.489173 eV Core-core repulsion = 17762.957842 eV Total energy + Delta-G solvation = -3284.531331 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.53622 -39.34136 -36.95658 -35.57405 -35.24221 -32.65782 -31.99115 -29.86086 -27.97944 -26.29035 -25.17553 -22.18619 -21.28547 -20.84324 -20.27709 -19.32549 -17.64278 -17.01333 -16.48114 -16.13002 -15.81767 -15.40293 -15.00642 -14.62297 -14.08699 -13.91055 -13.58197 -13.24712 -12.75155 -12.69911 -12.55024 -12.29173 -11.98281 -11.80652 -11.58783 -11.51297 -10.99146 -10.90157 -10.86649 -10.58175 -10.34332 -10.12515 -9.97826 -9.96115 -9.62841 -9.18030 -8.87916 -8.49796 -8.26072 -6.10326 -4.15815 2.47172 2.55752 2.75712 3.29555 3.34172 3.37186 3.47021 4.37132 4.65557 4.81676 4.94368 5.07350 5.09738 5.19360 5.19928 5.32572 5.45342 5.54871 5.67871 5.80632 5.90239 5.98886 6.06073 6.16477 6.26256 6.31181 6.40520 6.44877 6.58487 6.68280 6.98418 7.10429 7.30652 7.39038 7.41259 7.83468 8.08600 8.21391 8.35630 8.86155 9.50585 10.98986 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021342 B = 0.004809 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.663311 B = 5820.544320 C = 6187.538188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.128 4.128 3 C 0.152 3.848 4 H 0.125 0.875 5 N -0.715 5.715 6 C 0.513 3.487 7 C -0.172 4.172 8 O -0.540 6.540 9 C 0.453 3.547 10 O -0.521 6.521 11 O -0.328 6.328 12 C 0.116 3.884 13 C 0.036 3.964 14 C -0.491 4.491 15 H 0.064 0.936 16 C 0.069 3.931 17 N -0.882 5.882 18 Si 0.893 3.107 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.204 4.204 23 C -0.143 4.143 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.409 0.591 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.040 0.960 35 H 0.262 0.738 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.486 -2.310 11.187 15.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.167 4.167 3 C 0.046 3.954 4 H 0.143 0.857 5 N -0.371 5.371 6 C 0.301 3.699 7 C -0.232 4.232 8 O -0.417 6.417 9 C 0.296 3.704 10 O -0.412 6.412 11 O -0.242 6.242 12 C 0.043 3.957 13 C 0.036 3.964 14 C -0.529 4.529 15 H 0.082 0.918 16 C -0.134 4.134 17 N -0.518 5.518 18 Si 0.720 3.280 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.242 4.242 23 C -0.181 4.181 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.085 0.915 29 H 0.246 0.754 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.627 -2.053 10.725 15.237 hybrid contribution 0.535 0.618 -0.383 0.903 sum -10.092 -1.435 10.342 14.521 Atomic orbital electron populations 1.21790 0.94045 1.00945 1.03080 1.21891 0.97511 0.93448 1.03819 1.20455 0.88561 0.96555 0.89840 0.85728 1.45875 1.17256 1.57934 1.16001 1.20742 0.80992 0.77816 0.90369 1.21905 1.04323 1.01799 0.95175 1.90747 1.51136 1.58820 1.40957 1.23432 0.91265 0.75178 0.80575 1.90604 1.65707 1.43421 1.41436 1.86518 1.26631 1.70235 1.40847 1.22990 0.72834 1.02358 0.97543 1.18772 0.96361 0.88533 0.92740 1.20352 1.09344 1.17794 1.05401 0.91835 1.25012 0.94932 0.96115 0.97339 1.69989 1.17449 1.27291 1.37107 0.86643 0.78208 0.78815 0.84310 1.20080 1.21269 1.20071 1.23015 1.04145 0.96562 1.00446 1.22538 0.90682 1.04105 1.00775 0.93053 0.92691 0.91715 0.89042 0.91480 0.75412 0.88857 0.89392 0.89228 0.90499 0.94150 0.92822 0.91540 0.89994 0.89358 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.51 37.15 0.32 -1.40 16 2 C -0.13 -1.63 5.57 -26.74 -0.15 -1.78 16 3 C 0.15 2.23 2.77 -69.08 -0.19 2.04 16 4 H 0.13 1.95 7.58 -51.93 -0.39 1.56 16 5 N -0.72 -8.79 4.90 -54.93 -0.27 -9.06 16 6 C 0.51 6.12 6.51 -10.99 -0.07 6.05 16 7 C -0.17 -1.28 10.32 36.00 0.37 -0.91 16 8 O -0.54 -8.30 14.23 5.55 0.08 -8.22 16 9 C 0.45 8.26 7.32 36.01 0.26 8.53 16 10 O -0.52 -10.28 15.59 -18.75 -0.29 -10.57 16 11 O -0.33 -6.90 9.96 -39.24 -0.39 -7.29 16 12 C 0.12 2.67 5.29 37.16 0.20 2.86 16 13 C 0.04 0.89 1.62 -155.66 -0.25 0.63 16 14 C -0.49 -13.21 8.77 -34.44 -0.30 -13.51 16 15 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 16 C 0.07 1.88 5.38 -17.82 -0.10 1.78 16 17 N -0.88 -24.62 12.88 55.43 0.71 -23.90 16 18 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 22 C -0.20 -4.33 9.96 -26.69 -0.27 -4.59 16 23 C -0.14 -3.26 9.37 -26.69 -0.25 -3.51 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.68 5.65 -51.93 -0.29 0.38 16 26 H 0.06 0.86 7.85 -51.93 -0.41 0.45 16 27 H 0.09 1.21 8.00 -51.93 -0.42 0.80 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.41 4.51 7.79 -40.82 -0.32 4.19 16 30 H 0.09 0.67 8.12 -51.93 -0.42 0.25 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.97 8.13 -51.93 -0.42 1.55 16 34 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 38 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 39 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 332.29 15.07 5.01 5.01 Total: -1.00 -30.54 332.29 -6.62 -37.16 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.02 Total: 4.72 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -0.43 Total: -3.81 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.44 Total: -32.96 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.60 Total: -26.08 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.54 -6.62 -37.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869676708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.836 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds