Wall clock time and date at job start Mon Mar 30 2020 19:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47473 * 2 1 4 4 H 1.09006 * 109.47216 * 304.99940 * 3 2 1 5 5 N 1.46498 * 109.47218 * 64.99575 * 3 2 1 6 6 C 1.34774 * 120.00114 * 275.00621 * 5 3 2 7 7 C 1.50697 * 120.00066 * 180.27514 * 6 5 3 8 8 O 1.21284 * 120.00271 * 359.97438 * 6 5 3 9 9 C 1.50700 * 109.47251 * 184.99801 * 3 2 1 10 10 O 1.20832 * 119.99897 * 239.99486 * 9 3 2 11 11 O 1.34225 * 120.00052 * 60.00294 * 9 3 2 12 12 C 1.45203 * 116.99973 * 180.02562 * 11 9 3 13 13 C 1.53002 * 109.46858 * 179.97438 * 12 11 9 14 14 C 1.50698 * 115.55143 * 65.10864 * 13 12 11 15 15 H 1.08001 * 119.99816 * 266.11047 * 14 13 12 16 16 C 1.37879 * 120.00357 * 86.10701 * 14 13 12 17 17 N 1.31514 * 119.99576 * 353.70840 * 16 14 13 18 18 Si 1.86794 * 120.00016 * 173.70690 * 16 14 13 19 19 H 1.48494 * 109.47457 * 60.00104 * 18 16 14 20 20 H 1.48504 * 109.47331 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47081 * 299.99965 * 18 16 14 22 22 C 1.53004 * 117.49810 * 279.43205 * 13 12 11 23 23 C 1.53005 * 117.49770 * 210.77451 * 13 12 11 24 24 H 1.09002 * 109.47235 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47589 * 300.00119 * 1 2 3 26 26 H 1.09001 * 109.47080 * 60.00504 * 1 2 3 27 27 H 1.09001 * 109.47180 * 239.99546 * 2 1 3 28 28 H 1.09004 * 109.47429 * 119.99889 * 2 1 3 29 29 H 0.96998 * 120.00008 * 95.00045 * 5 3 2 30 30 H 1.09005 * 109.47659 * 179.72199 * 7 6 5 31 31 H 1.09000 * 109.47409 * 299.71993 * 7 6 5 32 32 H 1.09004 * 109.47460 * 59.72260 * 7 6 5 33 33 H 1.09001 * 109.47076 * 299.99131 * 12 11 9 34 34 H 1.08997 * 109.46994 * 59.99796 * 12 11 9 35 35 H 0.97002 * 119.99231 * 179.97438 * 17 16 14 36 36 H 1.08992 * 117.49928 * 0.02562 * 22 13 12 37 37 H 1.08999 * 117.49455 * 145.02503 * 22 13 12 38 38 H 1.08998 * 117.49864 * 214.98450 * 23 13 12 39 39 H 1.09000 * 117.49610 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 7 1.6524 2.0975 1.2517 6 6 0.4351 2.6644 1.3669 7 6 0.0387 3.3436 2.6523 8 8 -0.3394 2.6326 0.4340 9 6 3.5419 1.4442 -0.1238 10 8 4.2191 1.9416 0.7445 11 8 4.1274 0.8933 -1.1987 12 6 5.5780 0.9305 -1.2508 13 6 6.0593 0.2597 -2.5389 14 6 5.6723 0.9559 -3.8182 15 1 4.7762 0.6606 -4.3439 16 6 6.4619 1.9699 -4.3175 17 7 7.4828 2.4137 -3.6172 18 14 6.0817 2.7131 -5.9885 19 1 4.7165 3.2969 -5.9716 20 1 7.0718 3.7770 -6.2940 21 1 6.1551 1.6558 -7.0288 22 6 6.1237 -1.2689 -2.5580 23 6 7.4150 -0.4487 -2.5025 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.2718 2.1231 1.9977 30 1 -0.9708 3.7434 2.5559 31 1 0.0670 2.6217 3.4685 32 1 0.7331 4.1571 2.8626 33 1 5.9157 1.9667 -1.2323 34 1 5.9862 0.3998 -0.3907 35 1 8.0386 3.1268 -3.9687 36 1 5.8227 -1.7965 -1.6530 37 1 5.8864 -1.7709 -3.4959 38 1 8.0267 -0.4115 -3.4039 39 1 7.9641 -0.4365 -1.5610 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869676708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:40:31 Heat of formation + Delta-G solvation = -126.484868 kcal Electronic energy + Delta-G solvation = -21048.290891 eV Core-core repulsion = 17762.957842 eV Total energy + Delta-G solvation = -3285.333048 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.88481 -40.57442 -38.66246 -37.12535 -36.52705 -34.03437 -33.65175 -30.68087 -29.37066 -27.89581 -27.04423 -23.35868 -22.96186 -22.09104 -21.45227 -21.21238 -18.89607 -18.61478 -17.86742 -17.57754 -17.25793 -16.66636 -16.50674 -16.34272 -15.62714 -15.01521 -14.95208 -14.49366 -14.18434 -14.00516 -13.64550 -13.51560 -13.32431 -13.08613 -12.92841 -12.88515 -12.81200 -12.51103 -12.42594 -12.08850 -11.89958 -11.71740 -11.69213 -11.39570 -10.96821 -10.79654 -10.50123 -10.25979 -10.08077 -8.15763 -6.26401 1.03844 1.36946 1.41944 1.42325 1.49629 1.65944 2.31222 2.41141 3.13261 3.31324 3.60695 3.77111 3.88910 3.99155 4.12216 4.35600 4.36844 4.44724 4.48551 4.57323 4.64160 4.67889 4.79319 4.81753 4.97817 5.00564 5.03142 5.13617 5.18890 5.28675 5.41432 5.42021 5.56974 5.62905 5.73638 6.34195 6.45627 6.65165 6.78892 7.17623 7.42532 8.92788 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021342 B = 0.004809 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.663311 B = 5820.544320 C = 6187.538188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.122 4.122 3 C 0.160 3.840 4 H 0.112 0.888 5 N -0.711 5.711 6 C 0.509 3.491 7 C -0.164 4.164 8 O -0.578 6.578 9 C 0.453 3.547 10 O -0.536 6.536 11 O -0.339 6.339 12 C 0.129 3.871 13 C 0.001 3.999 14 C -0.506 4.506 15 H 0.054 0.946 16 C 0.025 3.975 17 N -0.908 5.908 18 Si 0.948 3.052 19 H -0.276 1.276 20 H -0.284 1.284 21 H -0.268 1.268 22 C -0.176 4.176 23 C -0.145 4.145 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.417 0.583 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.041 0.959 34 H 0.056 0.944 35 H 0.261 0.739 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.503 -3.005 12.291 17.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.161 4.161 3 C 0.053 3.947 4 H 0.129 0.871 5 N -0.367 5.367 6 C 0.299 3.701 7 C -0.222 4.222 8 O -0.457 6.457 9 C 0.297 3.703 10 O -0.427 6.427 11 O -0.253 6.253 12 C 0.055 3.945 13 C 0.001 3.999 14 C -0.543 4.543 15 H 0.072 0.928 16 C -0.175 4.175 17 N -0.546 5.546 18 Si 0.774 3.226 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.193 1.193 22 C -0.213 4.213 23 C -0.182 4.182 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.255 0.745 30 H 0.115 0.885 31 H 0.133 0.867 32 H 0.123 0.877 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.649 -2.754 11.851 16.844 hybrid contribution 0.817 0.841 -0.682 1.357 sum -10.831 -1.913 11.169 15.676 Atomic orbital electron populations 1.21706 0.93308 1.01868 1.02164 1.21872 0.97929 0.91948 1.04303 1.20398 0.85498 0.98048 0.90755 0.87067 1.45918 1.17754 1.57882 1.15182 1.21613 0.80083 0.76972 0.91421 1.21937 1.04737 1.02425 0.93147 1.90737 1.52097 1.60215 1.42696 1.24120 0.92575 0.74145 0.79489 1.90589 1.66457 1.43891 1.41756 1.86518 1.25538 1.70976 1.42307 1.22591 0.74148 1.00155 0.97596 1.18875 0.98009 0.90669 0.92349 1.20615 1.09009 1.18144 1.06557 0.92761 1.25677 0.94942 0.96609 1.00312 1.70087 1.18304 1.27814 1.38380 0.85763 0.77817 0.78201 0.80810 1.20099 1.20983 1.19256 1.23024 1.01871 0.94513 1.01856 1.22474 0.90628 1.04544 1.00601 0.91132 0.92831 0.93405 0.89587 0.89947 0.74482 0.88452 0.86694 0.87673 0.94099 0.92618 0.92985 0.88757 0.89721 0.91303 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.51 71.98 0.61 -2.43 16 2 C -0.12 -2.94 5.57 30.59 0.17 -2.77 16 3 C 0.16 4.59 2.77 44.24 0.12 4.71 16 4 H 0.11 3.54 7.58 -2.38 -0.02 3.52 16 5 N -0.71 -16.54 4.90 -446.10 -2.19 -18.72 16 6 C 0.51 11.39 6.51 87.66 0.57 11.96 16 7 C -0.16 -1.98 10.32 71.23 0.74 -1.24 16 8 O -0.58 -17.43 14.23 -3.04 -0.04 -17.47 16 9 C 0.45 16.38 7.32 71.24 0.52 16.90 16 10 O -0.54 -20.92 15.59 21.95 0.34 -20.58 16 11 O -0.34 -14.25 9.96 -51.36 -0.51 -14.76 16 12 C 0.13 5.95 5.29 71.98 0.38 6.33 16 13 C 0.00 0.07 1.62 -52.92 -0.09 -0.02 16 14 C -0.51 -27.43 8.77 25.60 0.22 -27.21 16 15 H 0.05 2.96 7.82 -2.91 -0.02 2.93 16 16 C 0.03 1.37 5.38 84.66 0.46 1.82 16 17 N -0.91 -51.52 12.88 21.45 0.28 -51.24 16 18 Si 0.95 43.39 29.54 68.60 2.03 45.42 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 C -0.18 -7.14 9.96 30.62 0.30 -6.83 16 23 C -0.14 -6.50 9.37 30.62 0.29 -6.22 16 24 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.05 1.24 5.65 -2.39 -0.01 1.22 16 26 H 0.05 1.25 7.85 -2.39 -0.02 1.23 16 27 H 0.09 2.18 8.00 -2.39 -0.02 2.16 16 28 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.42 8.46 7.79 -92.71 -0.72 7.73 16 30 H 0.10 1.15 8.12 -2.38 -0.02 1.13 16 31 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.04 2.15 8.13 -2.39 -0.02 2.13 16 34 H 0.06 2.35 8.08 -2.39 -0.02 2.33 16 35 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 36 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 37 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 38 H 0.07 3.32 8.14 -2.39 -0.02 3.30 16 39 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -65.99 332.29 4.52 -61.47 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.32 Total: 20.88 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 4.30 Total: -4.99 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: -1.91 Total: -69.96 kcal Atomic # 8 Polarization: -52.60 SS G_CDS: -0.21 Total: -52.81 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -65.99 4.52 -61.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869676708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.020 kcal (2) G-P(sol) polarization free energy of solvation -65.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds