Wall clock time and date at job start Mon Mar 30 2020 19:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47121 * 2 1 4 4 C 1.50697 * 109.47228 * 120.00605 * 2 1 3 5 5 H 1.08001 * 119.99727 * 119.99912 * 4 2 1 6 6 C 1.37875 * 119.99965 * 299.99792 * 4 2 1 7 7 N 1.31515 * 120.00075 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99725 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46933 * 90.00032 * 8 6 4 10 10 H 1.48499 * 109.46854 * 209.99662 * 8 6 4 11 11 H 1.48495 * 109.47452 * 330.00204 * 8 6 4 12 12 C 1.50706 * 109.46623 * 240.00672 * 2 1 3 13 13 O 1.21279 * 119.99659 * 239.99615 * 12 2 1 14 14 N 1.34768 * 120.00164 * 59.99892 * 12 2 1 15 15 C 1.46506 * 120.00142 * 179.97438 * 14 12 2 16 16 H 1.09000 * 110.00956 * 325.70432 * 15 14 12 17 17 C 1.53932 * 110.02285 * 87.07452 * 15 14 12 18 18 C 1.54406 * 106.62614 * 119.30028 * 17 15 14 19 19 C 1.54111 * 104.14973 * 22.86120 * 18 17 15 20 20 C 1.54191 * 103.68084 * 322.98403 * 19 18 17 21 21 O 1.42887 * 110.70245 * 204.24361 * 19 18 17 22 22 C 1.45001 * 104.54887 * 213.61313 * 21 19 18 23 23 C 1.54982 * 101.85219 * 35.22039 * 22 21 19 24 24 O 1.42513 * 110.91362 * 82.02258 * 19 18 17 25 25 H 1.08996 * 109.47350 * 59.99339 * 1 2 3 26 26 H 1.09000 * 109.47121 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46745 * 299.99408 * 1 2 3 28 28 H 0.96997 * 119.99917 * 180.02562 * 7 6 4 29 29 H 0.97002 * 120.00385 * 0.02562 * 14 12 2 30 30 H 1.08994 * 110.02536 * 238.58784 * 17 15 14 31 31 H 1.08998 * 110.02799 * 359.96195 * 17 15 14 32 32 H 1.09007 * 110.49318 * 141.52545 * 18 17 15 33 33 H 1.09001 * 110.49813 * 264.06166 * 18 17 15 34 34 H 1.08992 * 110.48299 * 278.35096 * 20 19 18 35 35 H 1.09001 * 110.53504 * 155.65862 * 20 19 18 36 36 H 1.09002 * 110.94598 * 277.08463 * 22 21 19 37 37 H 1.08997 * 110.95353 * 153.36495 * 22 21 19 38 38 H 1.09005 * 110.69108 * 206.52259 * 23 22 21 39 39 H 1.09007 * 110.69009 * 83.33216 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1311 6 6 1.6993 -0.2396 2.4827 7 7 0.9436 0.8300 2.6035 8 14 2.3226 -1.1199 4.0077 9 1 3.6307 -0.5444 4.4116 10 1 1.3446 -0.9494 5.1121 11 1 2.4882 -2.5657 3.7119 12 6 2.0322 -0.7103 -1.2306 13 8 2.7295 -1.6964 -1.1195 14 7 1.7066 -0.2498 -2.4546 15 6 2.1953 -0.9400 -3.6509 16 1 3.1898 -1.3463 -3.4670 17 6 1.2269 -2.0718 -4.0390 18 6 0.7105 -1.7448 -5.4569 19 6 1.7926 -0.8202 -6.0479 20 6 2.2360 0.0373 -4.8456 21 8 1.2454 0.0023 -7.0803 22 6 2.3291 0.1640 -8.0300 23 6 3.0297 -1.2162 -7.9516 24 8 2.8848 -1.5784 -6.5609 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.7097 1.1615 3.4845 29 1 1.1492 0.5391 -2.5436 30 1 1.7520 -3.0269 -4.0440 31 1 0.3940 -2.1077 -3.3367 32 1 0.6210 -2.6551 -6.0498 33 1 -0.2481 -1.2287 -5.4044 34 1 1.5408 0.8618 -4.6881 35 1 3.2478 0.4134 -4.9967 36 1 3.0037 0.9618 -7.7193 37 1 1.9441 0.3494 -9.0328 38 1 4.0827 -1.1293 -8.2193 39 1 2.5267 -1.9404 -8.5926 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435708708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:43:46 Heat of formation + Delta-G solvation = -133.514480 kcal Electronic energy + Delta-G solvation = -21220.984205 eV Core-core repulsion = 17935.346330 eV Total energy + Delta-G solvation = -3285.637875 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.02909 -38.90808 -36.52642 -35.27675 -33.67495 -32.76532 -30.45583 -29.63873 -28.49834 -26.10539 -25.08728 -23.59375 -22.58632 -20.90028 -20.32093 -19.21805 -17.52491 -16.94442 -16.25149 -16.05971 -15.70795 -15.31444 -15.15674 -14.38734 -14.29622 -13.85762 -13.54214 -13.13903 -13.03937 -12.74488 -12.47819 -12.35543 -12.07720 -11.72462 -11.65681 -11.29731 -11.21886 -10.96732 -10.70887 -10.67456 -10.60654 -10.33810 -10.19695 -9.92417 -9.72066 -8.93070 -8.54204 -8.38941 -8.26405 -5.99305 -4.02071 3.18328 3.36535 3.41994 3.49333 3.65220 3.77996 3.97050 4.25100 4.45426 4.48433 4.54100 4.65873 4.82254 5.01897 5.21896 5.22782 5.33933 5.37514 5.42110 5.47941 5.58339 5.66063 5.77761 5.92539 6.01681 6.16417 6.33284 6.48126 6.66716 6.87548 6.95910 6.97722 7.20120 7.52544 7.80231 8.03858 8.20534 8.51610 9.07266 9.31721 9.63499 11.08385 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.047563 B = 0.003810 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.546999 B = 7346.834922 C = 7527.682830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.028 3.972 3 H 0.052 0.948 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.519 3.481 13 O -0.545 6.545 14 N -0.741 5.741 15 C 0.148 3.852 16 H 0.091 0.909 17 C -0.129 4.129 18 C -0.123 4.123 19 C 0.252 3.748 20 C -0.147 4.147 21 O -0.365 6.365 22 C 0.013 3.987 23 C 0.018 3.982 24 O -0.364 6.364 25 H 0.012 0.988 26 H 0.030 0.970 27 H 0.092 0.908 28 H 0.260 0.740 29 H 0.395 0.605 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.039 0.307 -21.531 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.007 3.993 3 H 0.069 0.931 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.309 3.691 13 O -0.421 6.421 14 N -0.395 5.395 15 C 0.042 3.958 16 H 0.109 0.891 17 C -0.168 4.168 18 C -0.161 4.161 19 C 0.175 3.825 20 C -0.186 4.186 21 O -0.285 6.285 22 C -0.063 4.063 23 C -0.059 4.059 24 O -0.285 6.285 25 H 0.031 0.969 26 H 0.050 0.950 27 H 0.111 0.889 28 H 0.070 0.930 29 H 0.229 0.771 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.387 -0.380 -21.159 21.166 hybrid contribution 0.117 0.103 0.563 0.584 sum 0.504 -0.276 -20.596 20.604 Atomic orbital electron populations 1.21731 0.96563 0.99772 1.00886 1.18878 0.94144 0.96823 0.89460 0.93073 1.21160 1.30802 1.12769 0.89034 0.90794 1.24951 0.95148 0.95101 0.99097 1.69874 1.37236 1.23163 1.23456 0.86459 0.78419 0.80283 0.82097 1.20704 1.21335 1.19751 1.21971 0.78319 0.84281 0.84523 1.90527 1.37933 1.26863 1.86764 1.46464 1.55217 1.32473 1.05393 1.21272 0.98703 0.91569 0.84233 0.89118 1.22572 0.99899 0.99408 0.94966 1.22549 0.97633 0.99140 0.96765 1.23742 0.85189 0.86145 0.87437 1.23112 1.03073 0.98474 0.93908 1.89195 1.34932 1.69990 1.34403 1.24430 0.89535 0.97441 0.94897 1.24273 1.02355 0.95479 0.83769 1.88894 1.51306 1.64841 1.23418 0.96913 0.95036 0.88914 0.93024 0.77116 0.90878 0.90386 0.90500 0.89589 0.88973 0.90169 0.90482 0.87465 0.88220 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.87 37.16 0.33 -2.72 16 2 C 0.03 0.71 2.64 -92.92 -0.25 0.46 16 3 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 4 C -0.50 -14.37 8.37 -34.44 -0.29 -14.66 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.47 11.32 55.43 0.63 -24.84 16 8 Si 0.90 22.10 29.54 -169.99 -5.02 17.07 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.52 12.01 7.14 -10.99 -0.08 11.93 16 13 O -0.55 -14.46 15.13 5.56 0.08 -14.38 16 14 N -0.74 -13.14 4.88 -52.62 -0.26 -13.40 16 15 C 0.15 2.33 3.24 -66.71 -0.22 2.11 16 16 H 0.09 1.64 7.59 -51.93 -0.39 1.24 16 17 C -0.13 -1.90 6.60 -25.51 -0.17 -2.06 16 18 C -0.12 -1.50 6.27 -25.41 -0.16 -1.66 16 19 C 0.25 3.06 1.21 -25.53 -0.03 3.03 16 20 C -0.15 -1.86 5.98 -25.38 -0.15 -2.02 16 21 O -0.37 -4.14 11.11 -59.02 -0.66 -4.80 16 22 C 0.01 0.10 7.96 38.20 0.30 0.41 16 23 C 0.02 0.14 8.08 38.20 0.31 0.45 16 24 O -0.36 -4.45 10.99 -59.02 -0.65 -5.10 16 25 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.39 6.08 7.76 -40.82 -0.32 5.76 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.08 1.22 7.92 -51.93 -0.41 0.81 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 1.09 7.73 -51.93 -0.40 0.68 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 317.06 15.07 4.78 4.78 Total: -1.00 -32.64 317.06 -7.53 -40.17 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.95 Total: 3.69 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -0.49 Total: -3.21 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.37 Total: -38.24 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -1.22 Total: -24.28 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.64 -7.53 -40.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435708708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.340 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds