Wall clock time and date at job start Mon Mar 30 2020 19:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47121 * 2 1 4 4 C 1.50697 * 109.47228 * 120.00605 * 2 1 3 5 5 H 1.08001 * 119.99727 * 119.99912 * 4 2 1 6 6 C 1.37875 * 119.99965 * 299.99792 * 4 2 1 7 7 N 1.31515 * 120.00075 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99725 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46933 * 90.00032 * 8 6 4 10 10 H 1.48499 * 109.46854 * 209.99662 * 8 6 4 11 11 H 1.48495 * 109.47452 * 330.00204 * 8 6 4 12 12 C 1.50706 * 109.46623 * 240.00672 * 2 1 3 13 13 O 1.21279 * 119.99659 * 239.99615 * 12 2 1 14 14 N 1.34768 * 120.00164 * 59.99892 * 12 2 1 15 15 C 1.46506 * 120.00142 * 179.97438 * 14 12 2 16 16 H 1.09000 * 110.00956 * 325.70432 * 15 14 12 17 17 C 1.53932 * 110.02285 * 87.07452 * 15 14 12 18 18 C 1.54406 * 106.62614 * 119.30028 * 17 15 14 19 19 C 1.54111 * 104.14973 * 22.86120 * 18 17 15 20 20 C 1.54191 * 103.68084 * 322.98403 * 19 18 17 21 21 O 1.42887 * 110.70245 * 204.24361 * 19 18 17 22 22 C 1.45001 * 104.54887 * 213.61313 * 21 19 18 23 23 C 1.54982 * 101.85219 * 35.22039 * 22 21 19 24 24 O 1.42513 * 110.91362 * 82.02258 * 19 18 17 25 25 H 1.08996 * 109.47350 * 59.99339 * 1 2 3 26 26 H 1.09000 * 109.47121 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46745 * 299.99408 * 1 2 3 28 28 H 0.96997 * 119.99917 * 180.02562 * 7 6 4 29 29 H 0.97002 * 120.00385 * 0.02562 * 14 12 2 30 30 H 1.08994 * 110.02536 * 238.58784 * 17 15 14 31 31 H 1.08998 * 110.02799 * 359.96195 * 17 15 14 32 32 H 1.09007 * 110.49318 * 141.52545 * 18 17 15 33 33 H 1.09001 * 110.49813 * 264.06166 * 18 17 15 34 34 H 1.08992 * 110.48299 * 278.35096 * 20 19 18 35 35 H 1.09001 * 110.53504 * 155.65862 * 20 19 18 36 36 H 1.09002 * 110.94598 * 277.08463 * 22 21 19 37 37 H 1.08997 * 110.95353 * 153.36495 * 22 21 19 38 38 H 1.09005 * 110.69108 * 206.52259 * 23 22 21 39 39 H 1.09007 * 110.69009 * 83.33216 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1311 6 6 1.6993 -0.2396 2.4827 7 7 0.9436 0.8300 2.6035 8 14 2.3226 -1.1199 4.0077 9 1 3.6307 -0.5444 4.4116 10 1 1.3446 -0.9494 5.1121 11 1 2.4882 -2.5657 3.7119 12 6 2.0322 -0.7103 -1.2306 13 8 2.7295 -1.6964 -1.1195 14 7 1.7066 -0.2498 -2.4546 15 6 2.1953 -0.9400 -3.6509 16 1 3.1898 -1.3463 -3.4670 17 6 1.2269 -2.0718 -4.0390 18 6 0.7105 -1.7448 -5.4569 19 6 1.7926 -0.8202 -6.0479 20 6 2.2360 0.0373 -4.8456 21 8 1.2454 0.0023 -7.0803 22 6 2.3291 0.1640 -8.0300 23 6 3.0297 -1.2162 -7.9516 24 8 2.8848 -1.5784 -6.5609 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 0.7097 1.1615 3.4845 29 1 1.1492 0.5391 -2.5436 30 1 1.7520 -3.0269 -4.0440 31 1 0.3940 -2.1077 -3.3367 32 1 0.6210 -2.6551 -6.0498 33 1 -0.2481 -1.2287 -5.4044 34 1 1.5408 0.8618 -4.6881 35 1 3.2478 0.4134 -4.9967 36 1 3.0037 0.9618 -7.7193 37 1 1.9441 0.3494 -9.0328 38 1 4.0827 -1.1293 -8.2193 39 1 2.5267 -1.9404 -8.5926 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001435708708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:43:46 Heat of formation + Delta-G solvation = -156.397630 kcal Electronic energy + Delta-G solvation = -21221.976493 eV Core-core repulsion = 17935.346330 eV Total energy + Delta-G solvation = -3286.630163 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.91225 -40.56792 -37.82990 -36.09261 -35.74933 -34.27801 -32.36015 -30.48386 -29.61660 -27.29989 -27.11878 -24.54872 -24.10225 -21.92347 -21.67355 -20.85367 -18.53226 -18.18341 -17.85147 -17.64660 -16.98939 -16.39812 -16.30392 -16.16282 -15.68875 -15.19507 -14.81654 -14.47783 -14.26410 -13.96654 -13.82449 -13.57368 -13.21870 -13.12241 -12.96579 -12.79553 -12.66879 -12.55524 -12.50440 -12.21693 -12.15019 -12.00127 -11.73407 -11.10424 -11.03270 -10.67492 -10.55155 -10.26146 -9.94813 -8.14544 -6.24748 1.40808 1.41274 1.53555 1.94266 2.31998 2.45856 2.52996 2.90147 3.14913 3.39430 3.49424 3.71493 3.98799 4.08291 4.16988 4.27348 4.32793 4.35848 4.47194 4.55098 4.63457 4.70796 4.76518 4.80470 4.88326 4.95206 4.96576 5.00337 5.03951 5.14166 5.16546 5.51097 5.67381 5.76960 5.95808 6.16337 6.22875 6.75635 6.87850 7.40901 7.57064 8.91313 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.047563 B = 0.003810 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.546999 B = 7346.834922 C = 7527.682830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.023 3.977 3 H 0.042 0.958 4 C -0.529 4.529 5 H 0.047 0.953 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.274 1.274 10 H -0.274 1.274 11 H -0.279 1.279 12 C 0.522 3.478 13 O -0.587 6.587 14 N -0.719 5.719 15 C 0.145 3.855 16 H 0.063 0.937 17 C -0.127 4.127 18 C -0.116 4.116 19 C 0.257 3.743 20 C -0.139 4.139 21 O -0.377 6.377 22 C 0.010 3.990 23 C 0.010 3.990 24 O -0.389 6.389 25 H 0.053 0.947 26 H 0.022 0.978 27 H 0.070 0.930 28 H 0.265 0.735 29 H 0.409 0.591 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.135 0.865 38 H 0.120 0.880 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.473 1.077 -23.236 23.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.002 3.998 3 H 0.059 0.941 4 C -0.568 4.568 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.200 1.200 10 H -0.199 1.199 11 H -0.204 1.204 12 C 0.311 3.689 13 O -0.467 6.467 14 N -0.372 5.372 15 C 0.040 3.960 16 H 0.082 0.918 17 C -0.166 4.166 18 C -0.154 4.154 19 C 0.178 3.822 20 C -0.177 4.177 21 O -0.297 6.297 22 C -0.066 4.066 23 C -0.065 4.065 24 O -0.310 6.310 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.246 0.754 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.153 0.847 38 H 0.137 0.863 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.148 0.433 -22.914 22.918 hybrid contribution 0.309 -0.109 0.997 1.050 sum 0.161 0.324 -21.916 21.919 Atomic orbital electron populations 1.21544 0.94939 0.99395 1.01752 1.18824 0.95437 0.95933 0.89622 0.94050 1.21297 1.31555 1.12718 0.91211 0.93458 1.25589 0.95190 0.95772 1.01386 1.69947 1.37218 1.23576 1.24288 0.85603 0.78406 0.78762 0.79160 1.20006 1.19856 1.20444 1.21564 0.78033 0.83673 0.85634 1.90506 1.39953 1.28687 1.87515 1.46169 1.54130 1.32396 1.04505 1.21380 0.97538 0.92830 0.84281 0.91841 1.22472 0.99033 0.98436 0.96624 1.22496 0.98107 0.99881 0.94881 1.23538 0.85026 0.85988 0.87599 1.23058 1.03912 0.98099 0.92636 1.89175 1.36138 1.69717 1.34680 1.24712 0.88968 0.97376 0.95542 1.24569 1.03968 0.96021 0.81962 1.88879 1.51291 1.65159 1.25718 0.92856 0.95905 0.91110 0.92597 0.75371 0.91990 0.91468 0.89632 0.88544 0.87596 0.89669 0.89647 0.84685 0.86253 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.87 71.98 0.64 -4.80 16 2 C 0.02 1.18 2.64 -12.29 -0.03 1.15 16 3 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.53 -31.26 8.37 25.60 0.21 -31.04 16 5 H 0.05 3.00 6.75 -2.91 -0.02 2.98 16 6 C 0.02 1.12 5.30 84.65 0.45 1.57 16 7 N -0.91 -51.63 11.32 21.45 0.24 -51.39 16 8 Si 0.95 45.58 29.54 68.60 2.03 47.60 16 9 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 12 C 0.52 24.53 7.14 87.66 0.63 25.16 16 13 O -0.59 -32.27 15.13 -3.03 -0.05 -32.32 16 14 N -0.72 -25.12 4.88 -438.79 -2.14 -27.26 16 15 C 0.14 4.52 3.24 45.78 0.15 4.66 16 16 H 0.06 2.35 7.59 -2.39 -0.02 2.34 16 17 C -0.13 -3.68 6.60 31.39 0.21 -3.47 16 18 C -0.12 -2.63 6.27 31.45 0.20 -2.43 16 19 C 0.26 5.71 1.21 31.37 0.04 5.75 16 20 C -0.14 -3.28 5.98 31.47 0.19 -3.09 16 21 O -0.38 -7.46 11.11 -126.23 -1.40 -8.86 16 22 C 0.01 0.12 7.96 72.66 0.58 0.69 16 23 C 0.01 0.14 8.08 72.66 0.59 0.73 16 24 O -0.39 -8.87 10.99 -126.23 -1.39 -10.26 16 25 H 0.05 1.96 7.56 -2.39 -0.02 1.94 16 26 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 28 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 29 H 0.41 11.89 7.76 -92.71 -0.72 11.18 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 2.08 7.92 -2.39 -0.02 2.06 16 32 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.11 2.21 7.73 -2.39 -0.02 2.19 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -71.44 317.06 1.46 -69.98 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.33 Total: 17.64 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 3.84 Total: -5.13 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -1.90 Total: -78.65 kcal Atomic # 8 Polarization: -48.60 SS G_CDS: -2.84 Total: -51.44 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -71.44 1.46 -69.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435708708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.422 kcal (2) G-P(sol) polarization free energy of solvation -71.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds