Wall clock time and date at job start Mon Mar 30 2020 19:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47457 * 2 1 4 4 H 1.09005 * 109.46885 * 305.00150 * 3 2 1 5 5 C 1.50699 * 109.47261 * 184.99916 * 3 2 1 6 6 H 1.07996 * 120.00063 * 239.99800 * 5 3 2 7 7 C 1.37874 * 119.99492 * 60.00141 * 5 3 2 8 8 N 1.31512 * 120.00601 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99602 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47430 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47488 * 119.99740 * 9 7 5 12 12 H 1.48505 * 109.47147 * 239.99956 * 9 7 5 13 13 N 1.46504 * 109.46897 * 64.99652 * 3 2 1 14 14 C 1.34770 * 120.00094 * 275.00343 * 13 3 2 15 15 O 1.21281 * 120.00244 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99761 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.47152 * 59.99841 * 16 14 13 18 18 C 1.52999 * 109.47466 * 300.00109 * 16 14 13 19 19 C 1.52997 * 109.47317 * 180.02562 * 18 16 14 20 20 C 1.53000 * 109.47060 * 59.99960 * 19 18 16 21 21 C 1.53002 * 109.47233 * 299.99657 * 20 19 18 22 22 H 1.08993 * 109.47662 * 180.02562 * 21 20 19 23 23 O 1.42905 * 109.47086 * 300.00656 * 21 20 19 24 24 C 1.42900 * 113.99523 * 269.99562 * 23 21 20 25 25 C 1.52997 * 109.46817 * 60.00194 * 21 20 19 26 26 H 1.08999 * 109.47216 * 60.00007 * 1 2 3 27 27 H 1.08999 * 109.47384 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47215 * 300.00489 * 1 2 3 29 29 H 1.08999 * 109.46972 * 239.99617 * 2 1 3 30 30 H 1.08999 * 109.47216 * 119.99992 * 2 1 3 31 31 H 0.97000 * 120.00439 * 180.02562 * 8 7 5 32 32 H 0.97006 * 119.99455 * 95.00523 * 13 3 2 33 33 H 1.08996 * 109.46929 * 59.99194 * 18 16 14 34 34 H 1.09002 * 109.46716 * 299.99999 * 18 16 14 35 35 H 1.09002 * 109.47153 * 299.99641 * 19 18 16 36 36 H 1.09001 * 109.46832 * 179.97438 * 19 18 16 37 37 H 1.08992 * 109.47399 * 59.99823 * 20 19 18 38 38 H 1.09004 * 109.46724 * 180.02562 * 20 19 18 39 39 H 1.08995 * 109.47077 * 60.00251 * 24 23 21 40 40 H 1.09006 * 109.46826 * 179.97438 * 24 23 21 41 41 H 1.09003 * 109.47302 * 300.00129 * 24 23 21 42 42 H 1.09002 * 109.47153 * 60.00231 * 25 21 20 43 43 H 1.09001 * 109.47289 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1432 0.8783 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8811 -1.3818 10 1 6.5987 1.5472 -0.1948 11 1 6.4970 -0.5176 -1.4629 12 1 6.3989 1.6166 -2.6103 13 7 1.6524 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3392 2.6327 0.4341 16 6 0.0367 3.3386 2.6545 17 1 0.7282 4.1541 2.8667 18 6 0.0808 2.3223 3.7973 19 6 -0.3244 3.0068 5.1043 20 6 -1.7436 3.5625 4.9704 21 6 -1.7876 4.5789 3.8276 22 1 -2.7985 4.9751 3.7324 23 8 -0.8815 5.6482 4.1061 24 6 -1.4662 6.7312 4.8323 25 6 -1.3825 3.8944 2.5206 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8292 -0.0619 -2.9495 32 1 2.2720 2.1231 1.9978 33 1 1.0917 1.9260 3.8923 34 1 -0.6107 1.5069 3.5851 35 1 0.3667 3.8225 5.3168 36 1 -0.2934 2.2826 5.9184 37 1 -2.4346 2.7468 4.7580 38 1 -2.0320 4.0504 5.9015 39 1 -1.8384 6.3674 5.7899 40 1 -0.7143 7.5014 5.0040 41 1 -2.2918 7.1506 4.2572 42 1 -2.0736 3.0787 2.3082 43 1 -1.4134 4.6186 1.7065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346717708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:45:10 Heat of formation + Delta-G solvation = -112.969760 kcal Electronic energy + Delta-G solvation = -21867.754597 eV Core-core repulsion = 18718.840702 eV Total energy + Delta-G solvation = -3148.913895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.90503 -38.39920 -35.85546 -34.88199 -32.33527 -31.24431 -30.52916 -29.90172 -26.87791 -26.59114 -23.71055 -22.70244 -22.38103 -20.32612 -19.52650 -19.09923 -17.26724 -16.15835 -15.97258 -15.63052 -15.22735 -14.91547 -14.69380 -14.41479 -14.09960 -13.57117 -13.02449 -12.68950 -12.66784 -12.60898 -12.28629 -11.98157 -11.73190 -11.47090 -11.34952 -11.22215 -11.08517 -10.91678 -10.81610 -10.76725 -10.34238 -10.25726 -10.18034 -10.07075 -9.57435 -9.53062 -8.97839 -8.73510 -8.44396 -7.70904 -6.08074 -4.16992 3.26113 3.34048 3.36900 3.55291 3.73516 4.18257 4.42524 4.69995 4.77549 4.93350 5.12922 5.18791 5.23158 5.27170 5.29893 5.42221 5.47729 5.51490 5.55923 5.68006 5.82086 5.92369 6.02298 6.12820 6.23561 6.27871 6.42197 6.43930 6.49753 6.53761 6.71845 7.09605 7.16006 7.25864 7.43587 7.56356 7.68099 7.80645 7.97142 8.24091 8.78499 8.85038 9.26809 9.51237 10.97254 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028138 B = 0.004492 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.871798 B = 6232.270511 C = 6574.318355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C 0.269 3.731 4 H 0.048 0.952 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.709 5.709 14 C 0.504 3.496 15 O -0.553 6.553 16 C -0.103 4.103 17 H 0.097 0.903 18 C -0.109 4.109 19 C -0.111 4.111 20 C -0.141 4.141 21 C 0.088 3.912 22 H 0.059 0.941 23 O -0.378 6.378 24 C 0.031 3.969 25 C -0.092 4.092 26 H 0.049 0.951 27 H 0.021 0.979 28 H 0.039 0.961 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.263 0.737 32 H 0.387 0.613 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.037 0.963 40 H 0.082 0.918 41 H 0.038 0.962 42 H 0.080 0.920 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.883 6.876 14.953 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.167 3.833 4 H 0.065 0.935 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.356 5.356 14 C 0.290 3.710 15 O -0.433 6.433 16 C -0.125 4.125 17 H 0.115 0.885 18 C -0.147 4.147 19 C -0.148 4.148 20 C -0.179 4.179 21 C 0.030 3.970 22 H 0.077 0.923 23 O -0.297 6.297 24 C -0.066 4.066 25 C -0.130 4.130 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.116 0.884 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.219 0.781 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.101 0.899 41 H 0.057 0.943 42 H 0.099 0.901 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.205 6.736 14.012 18.068 hybrid contribution 1.027 0.004 0.362 1.089 sum -8.178 6.740 14.374 17.858 Atomic orbital electron populations 1.21835 0.98411 0.97857 1.01264 1.21918 0.92574 0.99910 1.02131 1.18755 0.94074 0.89143 0.81304 0.93453 1.21296 0.90875 1.38673 1.06176 0.92101 1.24884 0.98511 0.94891 0.95426 1.69907 1.34956 1.37811 1.09373 0.86425 0.85046 0.77716 0.78095 1.19758 1.20922 1.20926 1.46487 1.14805 1.56023 1.18293 1.20397 0.82604 0.79077 0.88969 1.90643 1.51625 1.60138 1.40857 1.21250 0.98641 0.98816 0.93789 0.88482 1.21502 1.02143 0.97428 0.93598 1.21407 0.96403 0.99963 0.97055 1.22033 0.98342 0.99032 0.98451 1.22212 0.92455 0.87310 0.94978 0.92253 1.87963 1.37304 1.28993 1.75428 1.22749 0.98849 0.89901 0.95111 1.21403 0.96086 1.00170 0.95295 0.93231 0.96029 0.94190 0.88423 0.95148 0.92700 0.78083 0.91306 0.91726 0.91157 0.92166 0.91043 0.92210 0.94434 0.89908 0.94306 0.90114 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.52 37.16 0.32 -2.77 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.86 2.24 -69.08 -0.15 6.71 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.22 8.73 -34.44 -0.30 -14.52 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -25.00 11.29 55.43 0.63 -24.37 16 9 Si 0.90 20.83 29.54 -169.99 -5.02 15.80 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.71 -14.90 4.91 -54.93 -0.27 -15.17 16 14 C 0.50 10.07 5.72 -10.99 -0.06 10.00 16 15 O -0.55 -12.94 13.12 5.56 0.07 -12.87 16 16 C -0.10 -1.57 2.38 -91.77 -0.22 -1.79 16 17 H 0.10 1.48 7.68 -51.93 -0.40 1.08 16 18 C -0.11 -1.40 5.10 -26.73 -0.14 -1.54 16 19 C -0.11 -1.18 5.78 -26.73 -0.15 -1.34 16 20 C -0.14 -1.40 5.63 -26.73 -0.15 -1.55 16 21 C 0.09 0.99 2.92 -26.73 -0.08 0.92 16 22 H 0.06 0.59 7.78 -51.93 -0.40 0.18 16 23 O -0.38 -4.54 9.00 -35.23 -0.32 -4.86 16 24 C 0.03 0.27 10.82 101.05 1.09 1.36 16 25 C -0.09 -1.29 4.23 -26.73 -0.11 -1.40 16 26 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.04 0.87 5.65 -51.92 -0.29 0.58 16 29 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.39 7.21 7.96 -40.82 -0.32 6.89 16 33 H 0.07 0.87 7.56 -51.93 -0.39 0.48 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.79 7.68 -51.93 -0.40 0.39 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.52 7.87 -51.93 -0.41 0.11 16 39 H 0.04 0.28 7.87 -51.93 -0.41 -0.13 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 42 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 43 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 LS Contribution 332.60 15.07 5.01 5.01 Total: -1.00 -30.14 332.60 -7.57 -37.72 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -7.48 Total: 6.24 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -0.20 Total: -7.50 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.36 Total: -39.54 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.24 Total: -17.73 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.14 -7.57 -37.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346717708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.252 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds