Wall clock time and date at job start Mon Mar 30 2020 19:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46911 * 2 1 4 4 H 1.09002 * 109.46888 * 304.99354 * 3 2 1 5 5 C 1.53004 * 109.46786 * 184.99923 * 3 2 1 6 6 O 1.42898 * 109.47220 * 64.99677 * 3 2 1 7 7 C 1.42902 * 113.99889 * 209.99865 * 6 3 2 8 8 C 1.50698 * 109.46888 * 180.02562 * 7 6 3 9 9 O 1.21276 * 120.00564 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99966 * 180.02562 * 8 7 6 11 11 C 1.46919 * 120.63188 * 179.97438 * 10 8 7 12 12 C 1.53195 * 108.89273 * 233.51696 * 11 10 8 13 13 C 1.53070 * 109.29524 * 305.57804 * 12 11 10 14 14 C 1.50699 * 109.44585 * 181.23845 * 13 12 11 15 15 H 1.08005 * 120.00131 * 239.80327 * 14 13 12 16 16 C 1.37878 * 120.00094 * 59.78830 * 14 13 12 17 17 N 1.31516 * 119.99537 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00155 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47240 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47439 * 120.00433 * 18 16 14 21 21 H 1.48500 * 109.47127 * 240.00926 * 18 16 14 22 22 C 1.53039 * 109.65812 * 61.15209 * 13 12 11 23 23 C 1.46928 * 120.62829 * 359.97438 * 10 8 7 24 24 H 1.09007 * 109.47044 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47252 * 300.00136 * 1 2 3 26 26 H 1.08996 * 109.47058 * 60.00911 * 1 2 3 27 27 H 1.08997 * 109.47908 * 239.99205 * 2 1 3 28 28 H 1.09005 * 109.47183 * 119.99662 * 2 1 3 29 29 H 1.08995 * 109.47473 * 60.00049 * 5 3 2 30 30 H 1.09003 * 109.46521 * 180.02562 * 5 3 2 31 31 H 1.09002 * 109.46943 * 299.99398 * 5 3 2 32 32 H 1.09000 * 109.46858 * 59.99836 * 7 6 3 33 33 H 1.09005 * 109.47150 * 300.00086 * 7 6 3 34 34 H 1.09002 * 109.58751 * 353.37646 * 11 10 8 35 35 H 1.08996 * 109.58750 * 113.65831 * 11 10 8 36 36 H 1.08997 * 109.50046 * 65.38734 * 12 11 10 37 37 H 1.09003 * 109.49733 * 185.48713 * 12 11 10 38 38 H 1.09007 * 109.35101 * 301.12962 * 13 12 11 39 39 H 0.97008 * 119.99764 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.49876 * 178.74890 * 22 13 12 41 41 H 1.09005 * 109.52615 * 58.67140 * 22 13 12 42 42 H 1.08998 * 109.58787 * 246.20220 * 23 10 8 43 43 H 1.09007 * 109.58600 * 6.48533 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 8 1.6618 2.0814 1.2210 7 6 1.4557 3.4903 1.1002 8 6 1.0636 4.0573 2.4402 9 8 0.9703 3.3271 3.4039 10 7 0.8166 5.3762 2.5677 11 6 0.4328 5.9437 3.8674 12 6 -0.8699 6.7321 3.6992 13 6 -0.6944 7.7672 2.5853 14 6 -1.9641 8.5653 2.4375 15 1 -2.4956 8.5654 1.4972 16 6 -2.4475 9.2952 3.5027 17 7 -1.8002 9.2952 4.6475 18 14 -4.0217 10.2840 3.3197 19 1 -4.5537 10.1176 1.9433 20 1 -5.0268 9.8004 4.3001 21 1 -3.7365 11.7196 3.5703 22 6 -0.3826 7.0562 1.2664 23 6 0.9261 6.2737 1.4096 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 3.8532 0.9570 -1.0570 30 1 3.9281 2.4720 -0.1252 31 1 3.9994 0.9053 0.7162 32 1 0.6617 3.6807 0.3781 33 1 2.3768 3.9645 0.7608 34 1 0.2827 5.1392 4.5874 35 1 1.2196 6.6094 4.2222 36 1 -1.6770 6.0491 3.4346 37 1 -1.1123 7.2378 4.6339 38 1 0.1275 8.4363 2.8402 39 1 -2.1401 9.8090 5.3968 40 1 -0.2802 7.7941 0.4707 41 1 -1.1927 6.3687 1.0227 42 1 1.7521 6.9683 1.5623 43 1 1.1039 5.6871 0.5082 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541050793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 19:43:09 Heat of formation + Delta-G solvation = -119.647238 kcal Electronic energy + Delta-G solvation = -21316.523988 eV Core-core repulsion = 18167.320536 eV Total energy + Delta-G solvation = -3149.203452 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.19394 -39.37086 -38.24584 -35.38489 -34.71789 -32.97299 -32.05710 -30.75949 -29.07491 -27.63279 -24.76684 -24.47150 -23.77661 -21.92776 -21.60676 -19.88411 -18.63999 -18.11106 -17.74083 -17.06104 -16.69649 -16.50137 -15.61825 -15.37039 -14.95123 -14.82723 -14.62567 -14.56863 -14.29800 -14.12215 -13.74614 -13.57234 -13.35067 -13.04440 -12.92346 -12.83076 -12.53938 -12.42559 -12.24339 -12.16147 -11.95639 -11.88670 -11.44253 -11.42461 -11.12258 -10.84458 -10.65800 -10.55549 -10.40268 -9.57430 -8.07778 -6.21560 1.40261 1.43463 1.53227 1.57265 1.80263 2.43934 2.89855 3.19229 3.56039 3.92441 4.03219 4.08548 4.20182 4.23153 4.28564 4.31033 4.35776 4.45429 4.51242 4.60395 4.68983 4.71123 4.75064 4.84819 4.90345 4.98147 5.07748 5.11864 5.16741 5.23090 5.25869 5.32927 5.45492 5.45599 5.52177 5.66682 5.98190 6.10998 6.22545 6.38218 6.51721 6.90775 7.16841 7.46945 8.95860 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.033474 B = 0.003738 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.269754 B = 7488.315186 C = 7641.119385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C 0.073 3.927 4 H 0.081 0.919 5 C -0.173 4.173 6 O -0.388 6.388 7 C 0.053 3.947 8 C 0.504 3.496 9 O -0.584 6.584 10 N -0.602 5.602 11 C 0.121 3.879 12 C -0.111 4.111 13 C 0.043 3.957 14 C -0.531 4.531 15 H 0.054 0.946 16 C 0.011 3.989 17 N -0.917 5.917 18 Si 0.950 3.050 19 H -0.266 1.266 20 H -0.286 1.286 21 H -0.281 1.281 22 C -0.118 4.118 23 C 0.108 3.892 24 H 0.062 0.938 25 H 0.033 0.967 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.020 0.980 37 H 0.072 0.928 38 H 0.005 0.995 39 H 0.260 0.740 40 H 0.078 0.922 41 H 0.048 0.952 42 H 0.080 0.920 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.217 -12.632 -13.715 20.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C 0.016 3.984 4 H 0.099 0.901 5 C -0.230 4.230 6 O -0.307 6.307 7 C -0.026 4.026 8 C 0.293 3.707 9 O -0.464 6.464 10 N -0.336 5.336 11 C -0.002 4.002 12 C -0.150 4.150 13 C 0.025 3.975 14 C -0.569 4.569 15 H 0.073 0.927 16 C -0.187 4.187 17 N -0.556 5.556 18 Si 0.777 3.223 19 H -0.190 1.190 20 H -0.212 1.212 21 H -0.207 1.207 22 C -0.156 4.156 23 C -0.013 4.013 24 H 0.081 0.919 25 H 0.052 0.948 26 H 0.081 0.919 27 H 0.120 0.880 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.090 0.910 38 H 0.023 0.977 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.098 0.902 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.142 -13.038 -12.883 20.483 hybrid contribution -1.080 0.979 0.560 1.561 sum 8.063 -12.059 -12.323 19.034 Atomic orbital electron populations 1.21734 0.95897 1.01942 1.01422 1.21664 0.96199 0.94588 1.03181 1.22507 0.95334 0.94356 0.86157 0.90072 1.22293 0.94927 1.02794 1.03012 1.88037 1.89807 1.18673 1.34233 1.22317 1.03301 0.83670 0.93293 1.21037 0.76750 0.81575 0.91319 1.90649 1.54046 1.59335 1.42382 1.48249 1.66972 1.06963 1.11384 1.21532 0.97445 0.96541 0.84673 1.21780 0.93703 0.96451 1.03047 1.18639 0.95137 0.92288 0.91469 1.21634 1.09674 1.27908 0.97649 0.92729 1.25725 1.00012 0.97740 0.95226 1.69992 1.40603 1.42197 1.02844 0.85619 0.80028 0.78486 0.78191 1.19020 1.21228 1.20671 1.21879 0.96180 0.98703 0.98833 1.22049 0.98472 0.93113 0.87685 0.91873 0.94754 0.91863 0.88038 0.92494 0.89307 0.92073 0.93046 0.88027 0.87410 0.91888 0.91799 0.96090 0.91001 0.97681 0.93124 0.90389 0.93352 0.90207 0.86719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.81 71.98 0.71 -2.10 16 2 C -0.12 -1.98 5.64 30.59 0.17 -1.80 16 3 C 0.07 1.31 2.72 30.60 0.08 1.39 16 4 H 0.08 1.11 7.79 -2.39 -0.02 1.09 16 5 C -0.17 -2.50 9.53 71.98 0.69 -1.82 16 6 O -0.39 -10.54 9.06 -129.94 -1.18 -11.71 16 7 C 0.05 1.28 4.57 71.24 0.33 1.61 16 8 C 0.50 17.68 7.78 87.66 0.68 18.36 16 9 O -0.58 -26.16 15.91 16.02 0.25 -25.90 16 10 N -0.60 -20.92 2.97 -818.97 -2.44 -23.36 16 11 C 0.12 4.97 6.43 86.36 0.56 5.53 16 12 C -0.11 -5.30 5.16 30.68 0.16 -5.14 16 13 C 0.04 2.04 2.06 -11.50 -0.02 2.01 16 14 C -0.53 -28.14 8.56 25.60 0.22 -27.92 16 15 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 16 C 0.01 0.62 5.30 84.65 0.45 1.07 16 17 N -0.92 -52.10 11.30 21.45 0.24 -51.85 16 18 Si 0.95 43.00 29.54 68.60 2.03 45.02 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 20 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 22 C -0.12 -4.19 5.30 30.66 0.16 -4.03 16 23 C 0.11 3.01 6.34 86.35 0.55 3.55 16 24 H 0.06 1.00 8.14 -2.38 -0.02 0.99 16 25 H 0.03 0.84 7.82 -2.39 -0.02 0.82 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.84 7.87 -2.39 -0.02 0.82 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.10 1.96 7.64 -2.39 -0.02 1.94 16 33 H 0.11 1.88 7.67 -2.38 -0.02 1.86 16 34 H 0.06 2.74 7.01 -2.39 -0.02 2.73 16 35 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 3.89 6.03 -2.39 -0.01 3.88 16 38 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16 39 H 0.26 14.12 8.31 -92.70 -0.77 13.35 16 40 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 42 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.11 2.14 5.93 -2.38 -0.01 2.13 16 Total: -1.00 -69.22 340.81 4.59 -64.63 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.96 Total: 12.46 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 4.72 Total: -9.29 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -2.19 Total: -75.21 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -0.92 Total: -37.62 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -69.22 4.59 -64.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541050793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.014 kcal (2) G-P(sol) polarization free energy of solvation -69.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds